Aktuelle wissenschaftliche Publikationen

2022

Acevedo-Garcia, J., Walden, K., Leissing, F., Baumgarten, K., Drwiega, K., Kwaaitaal, M., Reinstädler, A., Freh, M., Dong, X., James, G.V., Baus, L.C., Mascher, M., Stein, N., Schneeberger, K., Brocke-Ahmadinejad, N., Kollmar, M., Schulze-Lefert, P., Panstruga, R. (2022) Barley Ror1 encodes a class XI myosin required for mlo-based broad-spectrum resistance to the fungal powdery mildew pathogen. Plant Journal, doi: 10.1111/tpj.15930. open access

Almario, J., Mahmoudi, M., Kroll, S., Agler, M., Placzek, A., Mari, A., & Kemen, E. (2022). The Leaf Microbiome of Arabidopsis Displays Reproducible Dynamics and Patterns throughout the Growing Season. mBio, 13(3). doi:10.1128/mbio.02825-21.

Amanda, D., Frey, F. P., Neumann, U., Przybyl, M., Šimura, J., Zhang, Y., Chen, Z., Gallavotti, A., Fernie, A. R., Ljung, K., & Acosta, I. F. (2022). Auxin boosts energy generation pathways to fuel pollen maturation in barley. Current Biology. doi:10.1016/j.cub.2022.02.073. open access

Bonthala, V. S., & Stich, B. (2022). Genetic Divergence of Lineage-Specific Tandemly Duplicated Gene Clusters in Four Diploid Potato Genotypes. Frontiers in Plant Science, 13: 875202. doi:10.3389/fpls.2022.875202. open acces

Bourceret, A., Guan, R., Dorau, K., Mansfeldt, T., Omidbakhshfard, A., Medeiros, D. B., Fernie, A. R., Hofmann, J., Sonnewald, U., Mayer, J., Gerlach, N., The RECONSTRUCT consortium, Bucher, M., Garrido Oter, R., Spaepen, S., & Schulze-Lefert, P. (2022). Maize Field Study Reveals Covaried Microbiota and Metabolic Changes in Roots over Plant Growth. mBio, e02584-21. doi:10.1128/mbio.02584-21. open access

Bowman, J. L., M. Arteaga-Vazquez, F. Berger, L. N. Briginshaw, P. Carella, A. Aguilar-Cruz, K. M. Davies, T. Dierschke, L. Dolan, A. E. Dorantes-Acosta, T. J. Fisher, E. Flores-Sandoval, K. Futagami, K. Ishizaki, R. Jibran, T. Kanazawa, H. Kato, T. Kohchi, J. Levins, S. S. Lin, H. Nakagami, R. Nishihama, F. Romani, S. Schornack, Y. Tanizawa, M. Tsuzuki, T. Ueda, Y. Watanabe, K. T. Yamato, and S. Zachgo. (2022)The renaissance and enlightenment of Marchantia as a model system.  Plant Cell. doi: 10.1093/plcell/koac219.

Casale, F., Van Inghelandt, D., Weisweiler, M., Li, J. Q., & Stich, B. (2022). Genomic prediction of the recombination rate variation in barley - A route to highly recombinogenic genotypes. Plant Biotechnology Journal, 20, 676-690. doi:10.1111/pbi.13746. open acces

Chandrasekar, B., Wanke, A., Wawra, S., Saake, P., Mahdi, L., Charura, N., Neidert, M., Poschmann, G., Malisic, M., Thiele, M., Stuehler, K., Dama, M., Pauly, M., & Zuccaro, A. (2022). Fungi hijack a ubiquitous plant apoplastic endoglucanase to release a ROS scavenging beta-glucan decasaccharide to subvert immune responses. Plant Cell, 34(7), 2765-2784. doi:10.1093/plcell/koac114. open acces

Copeland, C. (2022). The feeling is mutual: Increased host putrescine biosynthesis promotes both plant and endophyte growth. Plant Physiology, 188(4), 1939-1941. doi:10.1093/plphys/kiac001. open acces

Dongus JA, Bhandari DD, Penner E, Lapin D, Stolze SC, Harzen A, Patel M, Archer L, Dijkgraaf L, Shah J, Nakagami H, Parker JE. Cavity surface residues of PAD4 and SAG101 contribute to EDS1 dimer signaling specificity in plant immunity. 2022. Plant Journal 110:1415-1432, doi: 10.1111/tpj.15747. open acces

Durán, P., T. J. Ellis, T. Thiergart, J. Agren, and S. Hacquard (2022) Climate drives rhizosphere microbiome variation and divergent selection between geographically distant Arabidopsis populations.  New Phytologist. doi: 10.1111/nph.18357.

Durán, P., Flores-Uribe, J., Wippel, K., Zhang, P., Guan, R., Melkonian, B., Melkonian, M., Garrido-Oter, R. (2022) Shared features and reciprocal complementation of the Chlamydomonas and Arabidopsis microbiota. Nature Communications 13, 406, doi: 10.1038/s41467-022-28055-8. open access

Durand, S., Lian, Q., Jing, J., Ernst, M., Grelon, M., Zwicker, D. and Mercier, R. (2022) Joint control of meiotic crossover patterning by the synaptonemal complex and HEI10 dosage. Nature Communications 13, 5999, doi: 10.1038/s41467-022-33472-w. open acces

Emonet, A.,  Hay, A. (2022) Development and Diversity of Lignin Patterns. Plant Physiology 190: 31-43, doi: 10.1093/plphys/kiac261. open acces

Förderer, A.§, Li, E.§, Lawson, A. W.§, Deng, Y.-N.§, Sun, Y., Logemann, E., Zhang, X., Wen, J., Han, Z., Chang, J., Chen, Y.#, Schulze-Lefert, P.#, Chai, J.# (2022) A wheat resistosome defines common principles of immune receptor channels. Nature, doi: 10.1038/s41586-022-05231-w. open access
§Equal contribution authors #corresponding authors

Förderer, A., Yu, D., Li, E., Chai, J. (2022) Resistosomes at the interface of pathogens and plants. Current Opinion in Plant Biology 67, 102212, doi: 10.1016/j.pbi.2022.102212.

Flood, P. J., Nowrousian, M., Huettel, B., Woehle, C., Becker, K., Wollenweber, T. E., Begerow, D., & Grefen, C. (2022). Draft genome of the aardaker (Lathyrus tuberosus L.), a tuberous legume. BMC genomic data, 23(1): 70. doi:10.1186/s12863-022-01083-5. open acces

Fulgione, A., Neto, C., Elfarargi, A. F., Tergemina, E., Ansari, S., Göktay, M., Dinis, H., Döring, N., Flood, P. J., Rodriguez-Pacheco, S., Walden, N., Koch, M., Roux, F., Hermisson, J., & Hancock, A. M. (2022). Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages. Nature Communications, 13(1): 1461. doi:10.1038/s41467-022-28800-z. open access

Fuessl, M., König, A.-C., Eirich, J., Hartl, M., Kleinknecht, L., Bohne, A.-V., Harzen, A., Kramer, K., Leister, D., Nickelsen, J., & Finkemeier, I. (2022). Dynamic light- and acetate-dependent regulation of the proteome and lysine acetylome of Chlamydomonas. The Plant Journal, 109(1), 261-277. doi:10.1111/tpj.15555. open acces

Gao, H., and G. Coupland (2022) PIF4 and CDF2 co-operate to regulate cell elongation in Arabidopsis thaliana. Nature Plants. doi: 10.1038/s41477-022-01220-z. open acces

Gao, H., Song, W., Severing, E., Vaysières, A., Huettel, B., Franzen, R., Richter, R., Chai, J., Coupland, G. (2022) PIF4 enhances DNA binding by CDF2 to co-regulate target gene expression and promote Arabidopsis hypocotyl cell elongation. Nature Plants, doi: 10.1038/s41477-022-01213-y. open acces

Hacquard, S., Wang, E., Slater, H., & Martin, F. (2022). Impact of global change on the plant microbiome.New Phytologist, SI, 234(6), 1907-1909. doi:10.1111/nph.18187. open acces

Hofstatter, P. G., Thangavel, G., Lux, T., Neumann, P., Vondrak, T., Novak, P., Zhang, M., Costa, L., Castellani, M., Scott, A., Toegelová, H., Fuchs, J., Mata-Sucre, Y., Dias, Y., Vanzela, A. L. L., Huettel, B., Almeida, C. C. S., Šimková, H., Souza, G., Pedrosa-Harand, A., Macas, J., Mayer, K. F. X., Houben, A., & Marques, A. (2022). Repeat-based holocentromeres influence genome architecture and karyotype evolution. Cell. doi:10.1016/j.cell.2022.06.045. open acces

Huang, S., Jia, A., Song, W., Hessler, G., Meng, Y., Sun, Y., Xu, L., Laessle, H., Jirschitzka, J., Ma, S., Xiao, Y., Yu, D., Hou, J., Liu, R., Sun, H., Liu, X., Han, Z., Chang, J., Parker, J. E., & Chai, J. (2022). Identification and receptor mechanism of TIR-catalyzed small molecules in plant immunity. Science, doi 10.1126/science.abq3297.

Jia, A., Huang, S., Song, W., Wang, J., Meng, Y., Sun, Y., Xu, L., Laessle, H., Jirschitzka, J., Hou, J., Zhang, T., Yu, W., Hessler, G., Li, E., Ma, S., Yu, D., Gebauer, J., Baumann, U., Liu, X., Han, Z., Chang, J., Parker, J. E., & Chai, J. (2022). TIR-catalyzed ADP-ribosylation reactions produce signaling molecules for plant immunity. Science. Doi: 10.1126/science.abq8180.

Johanndrees, O., Baggs, E. L., Uhlmann, C., Locci, F., Laessle, H., Melkonian, K., Käufer, K., Dongus, J. A., Nakagami, H., Krasileva, K. V., Parker, J. E.*, & Lapin, D*. (2022). Variation in plant Toll/Interleukin-1 receptor domain protein dependence on ENHANCED DISEASE SUSCEPTIBILITY 1. Plant Physiology, kiac480, doi:10.1093/plphys/kiac480.  open access

Lapin, D., Johanndrees, O., Wu, Z., Li, X., & Parker, J. E. (2022). Molecular innovations in plant TIR-based immunity signaling. Plant Cell, 34, 1479-1496. doi:10.1093/plcell/koac035. open acces

Lebreton, A., Tang, N., Kuo, A., LaButti, K., Andreopoulos, W., Drula, E., Miyauchi, S., Barry, K., Clum, A., Lipzen, A., Mousain, D., Ng, V., Wang, R., Dai, Y., Henrissat, B., Grigoriev, I. V., Guerin-Laguette, A., Yu, F., & Martin, F. M. (2022). Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk-cap (Lactarius) mushrooms. New Phytologist, 235(1), 306-319. doi:10.1111/nph.18143.

Lian, Q. C., V. Solier, B. Walkemeier, S. Durand, B. Huettel, K. Schneeberger, and R. Mercier (2022) The megabase-scale crossover landscape is largely independent of sequence divergence. Nature Communications 13 (1). doi: 10.1038/s41467-022-31509-8. open acces

Liu S, Strauss S, Adibi M, Mosca G, Yoshida S, Dello Ioio R, Runions A, Andersen TG, Grossmann G, Huijser P, Smith RS, Tsiantis M. (2022) Cytokinin promotes growth cessation in the Arabidopsis root. Current Biology, 32:1974-1985, doi: 10.1016/j.cub.2022.03.019, (2022). open access

Loo, E.-.-I., Tajima, Y., Yamada, K., Kido, S., Hirase, T., Ariga, H., Fujiwara, T., Tanaka, K., Taji, T., Somssich, I. E., Parker, J. E., & Saijo, Y. (2022). Recognition of Microbe- and Damage-Associated Molecular Patterns by Leucine-Rich Repeat Pattern Recognition Receptor Kinases Confers Salt Tolerance in Plants. Molecular Plant-Microbe Interactions, 35(7), 554-566. doi:10.1094/MPMI-07-21-0185-Fl. open acces

Ma, K.-W., Ordon, J., & Schulze-Lefert, P. (2022). Gnotobiotic Plant Systems for Reconstitution and Functional Studies of the Root Microbiota. Current Protocols 2: e362. doi:10.1002/cpz1.362. open access

Majda, M., Trozzi, N., Mosca, G., Smith, R.S. (2022) How Cell Geometry and Cellular Patterning Influence Tissue Stiffness. International Journal of Molecular Sciences 23:5651, doi: 10.3390/ijms23105651. open access

Matsumoto, A., Schlueter, T., Melkonian, K., Takeda, A., Nakagami, H., & Mine, A. (2022). p A versatile Tn7 transposon-based bioluminescence tagging tool for quantitative and spatial detection of bacteria in plants. Plant Communications, 3(1): 100227. doi:10.1016/j.xplc.2021.100227. open acces

Melkonian, K., Stolze, S. C., Harzen, A., & Nakagami, H. (2022). miniTurbo-based interactomics of two plasma membrane-localized SNARE proteins in Marchantia polymorpha. New Phytologist, 235(2), 786-800. doi:10.1111/nph.18151. open acces

Meyer, F., et al (2022). Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods 19(4):429-440,  doi: 10.1038/s41592-022-01431-4. open access

Modesto, I., V. Inacio, P. Novikova, I. Carrasquinho, Y. Van de Peer, and C. M. Miguel (2022) SNP Detection in Pinus pinaster Transcriptome and Association with Resistance to Pinewood Nematode. Forests 13 (6). doi: 10.3390/f13060946.

Ortiz, D., Chen, J., Outram, M. A., Saur, I. M. L., Upadhyaya, N. M., Mago, R., Ericsson, D. J., Cesari, S., Chen, C., Williams, S. J., & Dodds, P. N. (2022). The stem rust effector protein AvrSr50 escapes Sr50 recognition by a substitution in a single surface-exposed residue. New Phytologist, 234(2), 592-606. doi:10.1111/nph.18011. open acces

Parker, J. E., Hessler, G., & Cui, H. (2022). A new biochemistry connecting pathogen detection to induced defense in plants. New Phytologist, 234(3), 819-826. doi:10.1111/nph.17924. open acces

Pérez-Antón M, Schneider I, Kroll P, Hofhuis H, Metzger S, Pauly M, Hay A. Explosive seed dispersal depends on SPL7 to ensure sufficient copper for localized lignin deposition via laccases. Proc Natl Acad Sci U S A. 2022 Jun 14;119(24):e2202287119. doi: 10.1073/pnas.2202287119. open access

Peters, S. A. and Charles J. Underwood, C. J. 2022. Technology-driven approaches for meiosis research in tomato and wild relatives. Plant Reproduction, https://doi.org/10.1007/s00497-022-00450-7. open access

Platre, M. P., S. B. Satbhai, L. Brent, M. F. Gleason, M. Cao, M. Grison, M. Glavier, L. Zhang, C. Gaillochet, C. Goeschl, M. Giovannetti, B. Enugutti, J. Neveu, M. von Reth, R. Alcazar, J. E. Parker, G. Vert, E. Bayer, and W. Busch (2022) The receptor kinase SRF3 coordinates iron-level and flagellin dependent defense and growth responses in plants. Nature Communications 13 (1). doi: 10.1038/s41467-022-32167-6. open acces

 

Qian, P., Song, W., Zaizen-Iida, M., Kume, S., Wang, G., Zhang, Y., Kinoshita-Tsujimura, K., Chai, J., & Kakimoto, T. (2022). A Dof-CLE circuit controls phloem organization. Nature Plants, 8(7), 817-827. doi:10.1038/s41477-022-01176-0.

Runge, P., Ventura, F., Kemen, E., & Stam, R. (2022). Distinct Phyllosphere Microbiome of Wild Tomato Species in Central Peru upon Dysbiosis. Microbial Ecology. doi:10.1007/s00248-021-01947-w. open acces

Sang, Q., Vayssières, A., O'Maoiléidigh, D. S., Yang, X., Vincent, C., Garica de Ollala, E. B., Cerise, M., Franzen, R., & Coupland, G. (2022). MicroRNA172 controls inflorescence meristem size through regulation of APETALA2 in Arabidopsis. New Phytologist, 235(1), 356-371. doi:10.1111/nph.18111. open acces

Saur, I.M.L., Lawson, A.W. & Schulze-Lefert, P. (2022) Buy one, get two. Nature Plants, doi: 10.1038/s41477-022-01097-y. open access

Schmitz, R.J., Marand, A.P., Zhang, X., Mosher, R.A., Turck, F., Chen, X., Axtell, M.J., Zhong, X., Brady, S.M., Megraw, M., Meyers, B.C. (2022) Quality control and evaluation of plant epigenomics data. Plant Cell 34: 503-513, doi: 10.1093/plcell/koab255.  open access

Schneider, M., Casale, F., & Stich, B. (2022). Accurate recombination estimation from pooled genotyping and sequencing: a case study on barley. BMC Genomics, 23(1): 468. doi:10.1186/s12864-022-08701-7. open acces

Schulten, A., B. Pietzenuk, J. Quintana, M. Scholle, R. Feil, M. Krause, M. Romera-Branchat, V. Wahl, E. Severing, G. Coupland, and U. Kramer (2022) Energy status-promoted growth and development of Arabidopsis require copper deficiency response transcriptional regulator SPL7.  Plant Cell. doi: 10.1093/plcell/koac215. open acces

Singh, A. (2022 )GIGANTEA regulates lateral root formation by modulating auxin signaling in Arabidopsis thaliana. Plant Signaling & Behavior 17 (1). doi: 10.1080/15592324.2022.2096780.

Strauß, S., Runions, A., Lane, B., Eschweiler, D., Bajpai, N., Trozzi, N., Routier-Kierzkowska, A.-L., Yoshida, S., Rodrigues da Silveira, S., Vijayan, A., Tofanelli, R., Majda, M., Echevin, E., Le Gloanec, C., Bertrand-Rakusova, H., Adibi, M., Schneitz, K., Bassel, G. W., Kierzkowski, D., Stegmaier, J., Tsiantis, M., & Smith, R. S. (2022). Using positional information to provide context for biological image analysis with MorphoGraphX 2.0. ELIFE, 11: e72601. doi:10.7554/eLife.72601. open acces

Sun, H.-Q., Jiao, W.-B., Campoy, J. A., Krause, K., Goel, M., Folz-Donahue, K., Kukat, C., Huettel, B., & Schneeberger, K. (2022). Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar. Nature Genetics, 54(3), 342-348. doi:10.1038/s41588-022-01015-0. open acces

Sun, Y.-F., Lebreton, A., Xing, J.-H., Fang, Y.-X., Si, J., Morin, E., Miyauchi, S., Drula, E., Ahrendt, S., Cobaugh, K., Lipzen, A., Koriabine, M., Riley, R., Kohler, A., Barry, K., Henrissat, B., Grigoriev, I. V., Martin, F. M., & Cui, B.-K. (2022). Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species. JOURNAL OF FUNGI, 8(3): 311. doi:10.3390/jof8030311. open acces

Tergemina E, Elfarargi AF, Flis P, Fulgione A, Göktay M, Neto C, Scholle M, Flood PJ, Xerri SA, Zicola J, Döring N, Dinis H, Krämer U, Salt DE, Hancock AM. (2022) A two-step adaptive walk rewires nutrient transport in a challenging edaphic environment. Science Advances 20;8(20):eabm9385. doi: 10.1126/sciadv.abm9385.open access

Tzortzakis, N.; Pitsikoulaki, G.; Stamatakis, A.; Chrysargyris, A. (2022) Ammonium to Total Nitrogen Ratio Interactive Effects with Salinity Application on Solanum lycopersicum Growth, Physiology, and Fruit Storage in a Closed Hydroponic System. Agronomy 12, 386. https://doi.org/10.3390/agronomy12020386. open access

Underwood, C. J., & Mercier, R. (2022). Engineering Apomixis: Clonal Seeds Approaching the Fields. Annual Review of Plant Biology, 73, 201-225. doi:10.1146/annurev-arplant-102720-013958.

van Rengs, W. M. J., Schmidt, M.-H.-W., Effgen, S., Le, D. B., Wang, Y., Zaidan, M. W. A., Huettel, B., Schouten, H. J., Usadel, B., & Underwood, C. J. (2022). A chromosome scale tomato genome built from complementary PacBio and Nanopore sequences alone reveals extensive linkage drag during breeding. The Plant Journal. doi:10.1111/tpj.15690. open access

Vijayan, A., Strauß, S., Tofanelli, R., Mody, T. A., Lee, K., Tsiantis, M., Smith, R. S., & Schneitz, K. (2022). The annotation and analysis of complex 3D plant organs using 3DCoordX. Plant Physiology, 189(3), 1278-1295. doi:10.1093/plphys/kiac145. open acces

Vinegra de la Torre, N., Vayssières, A., Obeng-Hinneh, E., Neumann, U., Zhou, Y., Lazaro, A., Roggen, A., Sun, H., Stolze, S. C., Nakagami, H., Schneeberger, K., Timmers, T., & Albani, M. (2022). FLOWERING REPRESSOR AAA(+) ATPase 1 is a novel regulator of perennial flowering in Arabis alpina. New Phytologist, 236, 729-744. doi:10.1111/nph.18374. open acces

von Heilborn, D. H., Nover, L.-L., Weber, M., Hoelzl, G., Gisch, N., Waldhans, C., Mittler, M., Kreyenschmidt, J., Woehle, C., Huettel, B., & Lipski, A. (2022). Polar lipid characterization and description of Chryseobacterium capnotolerans sp. nov., isolated from high CO2-containing atmosphere and emended descriptions of the genus Chryseobacterium, and the species C. balustinum, C. daecheongense, C. formosense, C. gleum, C. indologenes, C. joostei, C. scophthalmum and C. ureilyticum. International Journal of Systematic and Evolutionary Microbiology, 72(5): 005372. doi:10.1099/ijsem.0.005372.

Wang, Y., Strauss, S., Liu, S., Pieper, B., Lymbouridou, R., Runions, A., Tsiantis, M. (2022) The cellular basis for synergy between RCO and KNOX1 homeobox genes in leaf shape diversity.
Current Biology, doi: 10.1016/j.cub.2022.08.020. open access

Woetzel, S., Andrello, M., Albani, M., Koch, M. A., Coupland, G., & Gugerli, F. (2022). Arabis alpina: A perennial model plant for ecological genomics and life-history evolution. Molecular Ecology Resources, 22(2), 468-486. doi:10.1111/1755-0998.13490.

Yoshida, S., & Weijers, D. (2022). Quantitative analysis of 3D cellular geometry and modelling of the Arabidopsis embryo. Journal of Microscopy (Oxford), 287(3), 107-113. doi:10.1111/jmi.13130. open acces

Yu D, Song W, Tan EYJ, Liu L, Cao Y, Jirschitzka J, Li E, Logemann E, Xu C, Huang S, Jia A, Chang X, Han Z, Wu B, Schulze-Lefert P, Chai J. TIR domains of plant immune receptors are 2',3'-cAMP/cGMP synthetases mediating cell death. Cell. 2022 May 13:S0092-8674(22)00530-X. doi: 10.1016/j.cell.2022.04.032.

Zong, J., Wang, L., Zhu, L., Bian, L., Zhang, B., Chen, X., Huang, G., Zhang, X., Fan, J., Cao, L., Coupland, G., Liang, W., Zhang, D., & Yuan, Z. (2022). A rice single cell transcriptomic atlas defines the developmental trajectories of rice floret and inflorescence meristems. New Phytologist, 234(2), 494-512. doi:10.1111/nph.18008. open acces

Zönnchen, J. , Gantner, J., Lapin, D., Barthel, K., Eschen-Lippold, L., Erickson, J. L., Landeo Villanueva, S., Zantop, S., Kretschmer, C., Joosten, M. H. A. J., Parker, J. E., Guerois, R.,  Stuttmann, J. (2022) EDS1 complexes are not required for PRR responses and execute TNL-ETI from the nucleus in Nicotiana benthamiana. New Phytologist, doi: 10.1111/nph.18511. open access

 

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