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- Department of Plant Developmental Biology (Director: George Coupland)
- Department of Plant Microbe Interactions (Director: Paul Schulze-Lefert)
- Department of Comparative Development and Genetics (Director: Miltos Tsiantis)
- Bioinformatics and comparative genomics (Xiangchao Gan)
- Comparative Molecular Genetics of SBP-box Genes (Peter Huijser)
- Population Genetics (Stefan Laurent)
- Plant development and diversity (Miltos Tsiantis)
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- Independent Research Group hosted in the Department - Genetic basis for phenotypic evolution (Angela Hay)
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- Department of Chromosome Biology (Director: Raphael Mercier)
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- Regulation of stamen maturation in barley and Arabidopsis (Ivan Acosta)
- The evolution of annual and perennial life strategies (Maria Albani)
- Structural Biology (AvH Professor Jijie Chai)
- Transport Processes in Crop Plants (AvH Professor Wolf B. Frommer)
- Molecular basis of adaptive evolution (Angela Hancock)
- Genetic basis for phenotypic evolution (Angela Hay)
- Basic Immune System of Plants (Hirofumi Nakagami)
- Recombination Research (Bernd Reiss)
- Quantitative Genetics and Genomics of Plants (Benjamin Stich)
- Drought adaptation and flowering time control in barley (Maria von Korff)
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