Recent Scientific Publications

2024

Basak AK, Piasecka A, Hucklenbroich J, Türksoy GM, Guan R, Zhang P, Getzke F, Garrido-Oter R, Hacquard S, Strzalka K, Bednarek P, Yamada K, Nakano RT. (2024) ER body-resident myrosinases and tryptophan specialized metabolism modulate root microbiota assembly. New Phytol. 241, 329-342. doi: 10.1111/nph.19289. open access.

Bohle, F., Klaus, A., Ingelfinger, J., Tegethof, H., Safari, N., Schwarzlaender, M., Hochholdinger, F., Hahn, M., Meyer, A. J., Acosta, I. F., & Mueller-Schuessele, S. J. (2024). Contrasting cytosolic glutathione redox dynamics under abiotic and biotic stress in barley as revealed by the biosensor Grx1-roGFP2. Journal of Experimental Botany, 75(8), 2299-2312. doi:10.1093/jxb/erae035.

Bonthala, V. S., & Stich, B. (2024). StCoExpNet: a global co-expression network analysis facilitates identifying genes underlying agronomic traits in potatoes. Plant Cell Reports, 43(5): 117. doi:10.1007/s00299-024-03201-2. open access

Capilla-Perez, L., Solier, V., Gilbault, E., Lian, Q., Goel, M., Goel, M., Huettel, B., Keurentjes, J. J. B., Loudet, O., & Mercier, R. (2024). Enhanced recombination empowers the detection and mapping of Quantitative Trait Loci. Communications Biology, 7(1): 829. doi:10.1038/s42003-024-06530-w. open access

Castellani, M., Zhang, M., Thangavel, G., Mata Sucre, Y., Lux, T., Campoy, J. A., Marek, M., Huettel, B., Sun, H., Mayer, K. F. X, Schneeberger, K., Marques, A. (2024). Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning. Nature Plants. doi:10.1038/s41477-024-01625-y. open access

Cosenza, F., Shrestha, A., Van Inghelandt, D., Casale, F. A., Wu, P.-Y., Weisweiler, M., Li, J. Q., Wespel, F., & Stich, B. (2024). Genetic mapping reveals new loci and alleles for flowering time and plant height using the double round-robin population of barley. Journal of Experimental Botany, 75(8), 2385-2402. doi:10.1093/jxb/erae010. open access

Cui, S., Song, P., Wang, C., Chen, S., Hao, B., Xu, Z., Cai, L., Chen, X., Zhu, S., Gan, X., Dong, H., Hu, Y., Zhou, L., Hou, H., Tian, Y., Liu, X., Chen, L., Liu, S., Jiang, L., Wang, H., Jia, G., Zhou, S., & Wan, J. (2024). The RNA binding protein EHD6 recruits the m 6 A reader YTH07 and sequesters OsCOL4 mRNA into phase-separated ribonucleoprotein condensates to promote rice flowering. Molecular Plant, 17(6), 935-954. doi:10.1016/j.molp.2024.05.002. open access

Cullen, E., Hay, A. (2024) Creating an explosion: Form and function in explosive fruit. Current Opinion in Plant Biology 79, 102543. doi: 10.1016/j.pbi.2024.102543. open access

de Melo, S. M. F., Marques, A., & Almeida, C. (2024). The mitochondrial genome sequence of Syagrus coronata (Mart.) Becc. (Arecaceae) is characterized by gene insertion within intergenic spaces. Tree Genetics & Genomes, 20(2): 10. doi:10.1007/s11295-024-01643-z.

de Souza, F. D., Marques, A., & Almeida, C. (2024). Mitochondrial genome of Hancornia speciosa gomes: intergenic regions containing retrotransposons and predicted genes. Molecular Biology Reports, 51(1): 132. doi:10.1007/s11033-023-09184-9.

Dias, Y., Mata Sucre, Y., Thangavel, G., Costa, L., Báez, M., Houben, A., Marques, A. and Pedrosa-Harand, A. (2024), How diverse a monocentric chromosome can be? Repeatome and centromeric organization of Juncus effusus (Juncaceae). Plant Journal, doi: 10.1111/tpj.16712. open access

Emonet A, Perez-Anton M, Neumann U, Dunemann S, Huettel B, Koller R, Hay A: Amphicarpic development in the emerging model organism Cardamine chenopodiifolia. bioRxiv (2024) doi: 10.1101/2024.01.26.577352 . open access

Emonet A, Awad M, Tikhomirov N, Vasilarou M, Perez-Anton M, Gan X, Novikova P, Hay A: Polyploid genome assembly of Cardamine chenopodiifolia. bioRxiv(2024) doi: 10.1101/2024.01.24.576990. open access

Entila, F., Han, X., Mine, A., Schulze-Lefert, P., & Tsuda, K. (2024). Commensal lifestyle regulated by a negative feedback loop between Arabidopsis ROS and the bacterial T2SS. Nature Communications, 15(1): 456. doi:10.1038/s41467-024-44724-2. open access

Fernandes, J. B., Naish, M., Lian, Q., Burns, R., Tock, A. J., Rabanal, F. A., Wlodzimierz, P., Habring, A., Nicholas, D. Weigel, R. Mercier, and I. R. Henderson. 2024. Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis. Genome Biology 25: 30, doi: 10.1186/s13059-024-03163-4 open access

Freh, M., Reinstaedler, A., Neumann, K. D., Neumann, U., & Panstruga, R. (2024). The development of pleiotropic phenotypes in powdery mildew-resistant barley and Arabidopsis thaliana mlo mutants is linked to nitrogen availability. Plant, Cell and Environment, 47(7), 2362-2376. doi:10.1111/pce.14884. open access

Fuster-Pons, A., Murillo-Sanchez, A., Mendez-Vigo, B., Marcer, A., Pieper, B., Torres-Perez, R., Oliveros, J. C., Tsiantis, M., Pico, F. X., & Alonso-Blanco, C. (2024). The trichome pattern diversity of Cardamine shares genetic mechanisms with Arabidopsis but differs in environmental drivers. Plant Physiology, kiae213. doi:10.1093/plphys/kiae213. open access

Getzke, F., Wang, L., Chesneau, G., Böhringer, N., Mesny, F., Denissen, N., Wesseler, H., Adisa, P. T., Marner, M., Schulze-Lefert, P., Schäberle, T. F., & Hacquard, S. (2024). Physiochemical interaction between osmotic stress and a bacterial exometabolite promotes plant disease. Nature Communications, 15: 4438. doi:10.1038/s41467-024-48517-5. open access

Grones, C., Eekhout, T., Shi, D., Neumann, M., Berg, L. S., Ke, Y., Shahan, R., Cox, K. L., Gomez-Cano, F., Nelissen, H., Lohmann, J. U., Giacomello, S., Martin, O. C., Cole, B., Wang, J.-W., Kaufmann, K., Raissig, M. T., Palfalvi, G., Greb, T., Libault, M., & De Rybel, B. (2024). Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics. The Plant Cell, koae003, pp. 1-17. doi:10.1093/plcell/koae003. open access

Hu, Z.-L., Wilson-Sánchez, D., Bhatia, N., Rast-Somssich, M. I., Wu, A., Vlad, D., McGuire, L., Nikolov, L. A., Laufs, P., Gan, X., Laurent, S., Runions, A., Tsiantis, M. (2024) A CUC1/auxin genetic module links cell polarity to patterned tissue growth and leaf shape diversity in crucifer plants. Proc Natl Acad Sci (26):e2321877121. doi: 10.1073/pnas.2321877121. open access

Huang, L., Oekmen, B., Stolze, S. C., Kastl, M., Khan, M., Hilbig, D., Nakagami, H., Djamei, A., & Doehlemann, G. (2024). The fungal pathogen Ustilago maydis targets the maize corepressor RELK2 to modulate host transcription for tumorigenesis. New Phytologist, 241(4), 1747-1762. doi:10.1111/nph.19448. open access

Kim, H., J. Kim, N. Son, P. Kuo, C. Morgan, A. Chambon, D. Byun, J. Park, Y. Lee, Y. M. Park, J. A. Fozard, J. Guerin, A. Hurel, C. Lambing, M. Howard, I. Hwang, R. Mercier, M. Grelon, I. R. Henderson, and K. Choi. 2024. Control of meiotic crossover interference by a proteolytic chaperone network. Nature Plants 10: 453-68, doi: 10.1038/s41477-024-01633-y open access

Klug, K., Zhu, P., Pattar, P., Mueller, T., Safari, N., Sommer, F., Valero-Jimenez, C. A., van Kan, J. A. L., Huettel, B., Stueber, K., Scheuring, D., Schroda, M., & Hahn, M. (2024). Genome Comparisons between Botrytis fabae and the Closely Related Gray Mold Fungus Botrytis cinerea Reveal Possible Explanations for Their Contrasting Host Ranges. Journal of Fungi, 10(3): 216. doi:10.3390/jof10030216. open access

Kuo, Y.-T., Kurian, J. G., Schubert, V., Fuchs, J., Melzer, M., Muraleedharan, A., Maruthachalam, R., & Houben, A. (2024). The holocentricity in the dioecious nutmeg Myristica fragrans is not based on major satellite repeats. Chromosome Research, 32(2): 8. doi:10.1007/s10577-024-09751-1. open access

Kuo, Y.-T., Schubert, V., Marques, A., Schubert, I., & Houben, A. (2024). Centromere diversity: How different repeat-based holocentromeres may have evolved. Bioessays, 46(6): e2400013. doi:10.1002/bies.202400013. open access

Li, X.-M., Jenke, H., Strauss, S., Bazakos, C., Mosca, G., Lymbouridou, R., Kierzkowski, D., Neumann, U., Naik, P., Huijser, P., Laurent, S., Smith, R. S., Runions, A., Tsiantis, M., (2024). Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis. Current Biology, 34(3), 541-556.e515. doi:10.1016/j.cub.2023.12.050. open access

Lian, Q., Huettel,B., Walkemeier, B., Mayjonade, B., Lopez-Roques, C,; Gil, L., Roux, F., Schneeberger, K., Mercier, R. (2024). A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range, Nature Genetics 56, 982–991, doi: 10.1038/s41588-024-01715-9. open access

Locci F, Parker JE. (2024) Plant NLR immunity activation and execution: a biochemical perspective. Open Biology 14:230387, doi: 10.1098/rsob.230387. open access

Loo, E. P. I., Durán, P., Pang, T. Y., Westhoff, P., Deng, C., Durán, C., Lercher, M., Garrido Oter, R., & Frommer, W. B. (2024). Sugar transporters spatially organize microbiota colonization along the longitudinal root axis of Arabidopsis. Cell Host & Microbe, 32(4), 543-556.e6. doi:10.1016/j.chom.2024.02.014. open access

Lopez, H., and R. Mercier (2024) Meiosis: The silk moth and the elephant. Current Biology 34: R211-R13, doi: 10.1016/j.cub.2024.01.046 .

Ma, S., An, C., Lawson, A. W., Cao, Y., Sun, Y., Tan, E. Y. J., Pan, J., Jirschitzka, J., Kümmel, F., Mukhi, N., Han, Z., Feng, S., Wu, B., Schulze-Lefert, P., Chai, J. (2024) Oligomerization-mediated autoinhibition and cofactor binding of a plant NLR, Nature, doi: 10.1038/s41586-024-07668-7

Ma, X., Vanneste, S., Chang, J., Ambrosino, L., Barry, K., Bayer, T., Bobrov, A. A., Boston, L. B., Campbell, J. E., Chen, H., Chiusano, M. L., Dattolo, E., Grimwood, J., He, G., Jenkins, J., Khachaturyan, M., Marin-Guirao, L., Mesterhazy, A., Muhd, D.-D., Pazzaglia, J., Plott, C., Rajasekar, S., Rombauts, S., Ruocco, M., Scott, A. D., Tan, M. P., Van den Velde, J. D., Vanholme, B., Webber, J., Wong, L. L., Yan, M., Sung, Y. Y., Novikova, P. Y., Schmutz, J., Reusch, T. B. H., Procaccini, G., Olsen, J. L., & Van de Peer, Y. (2024). Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature Plants, 10, 240-255. doi:10.1038/s41477-023-01608-5.

Manosalva Perez, N., Ferrari, C., Engelhorn, J., Depuydt, T., Nelissen, H., Hartwig, T., & Vandepoele, K. (2024). MINI-AC: inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles. The Plant Journal, 117(1), 280-301. doi:10.1111/tpj.16483.

Mata-Sucre Y, Parteka LM, Ritz CM, Gatica-Arias A, Félix LP, Thomas WW, Souza G, Vanzela ALL, Pedrosa-Harand A, Marques A. (2024) Oligo-barcode illuminates holocentric karyotype evolution in Rhynchospora (Cyperaceae). Front Plant Sci. 15:1330927. doi: 10.3389/fpls.2024.1330927. open access

Mishra, P., Roggen, A., Ljung, K., Albani, M., & Vayssières, A. (2024). Adventitious rooting in response to long-term cold: a possible mechanism of clonal growth in alpine perennials. Frontiers in Plant Science, 15: 1352830. doi:10.3389/fpls.2024.1352830. open access

Mosca G, Eng RC, Adibi M, Yoshida S, Lane B, Bergheim L, Weber G, Smith RS, Hay A: Growth and tension in explosive fruit. Current Biology 2024, doi 10.1016/j.cub.2024.01.059. open access

Oliveira, L., Neumann, P., Mata Sucre, Y., Kuo, Y.-T., Marques, A., Schubert, V., & Macas, J. (2024). KNL1 and NDC80 represent new universal markers for the detection of functional centromeres in plants. Chromosome Research, 32(1): 3. doi:10.1007/s10577-024-09747-x.

Ordon, J., Thouin, J., Nakano, R. T., Ma, K.W., Zhang, P., Huettel, B, Garrido-Oter, R. and Schulze-Lefert, P. (2024) Chromosomal barcodes for simultaneous tracking of near-isogenic bacterial strains in plant microbiota. Nature Microbiology 9, 1117–1129, doi: 10.1038/s41564-024-01619-8. open access

Peckham, M., Neumann, U., & Culley, S. (2024). Introduction to women in microscopy: Volume 2. Journal of Mircroscopy, Special Issue, 295(1), 3-5. doi:10.1111/jmi.13337.

Regmi, K. C., Ghosh, S., Koch, B., Neumann, U., Stein, B., O'Connell, R. J., & Innes, R. W. (2024). Three-Dimensional Ultrastructure of Arabidopsis Cotyledons Infected with Colletotrichum higginsianum. Molecular Plant-Microbe Interactions, 37(4), 396-406. doi:10.1094/MPMI-05-23-0068-R. open access

Sajeev, N., Koornneef, M., & Bentsink, L. (2024). A commitment for life: Decades of unraveling the molecular mechanisms behind seed dormancy and germination. The Plant Cell, koad328, pp. 1-19. doi:10.1093/plcell/koad328. open access

Schmitz, G., Linstädter, A., Frank, A. S. K., Dittberner, H., Thome, J., Schrader, A., Linne von Berg, K.-H., Fulgione, A., Coupland, G., & de Meaux, J. (2024). Environmental filtering of life-history trait diversity in urban populations of Arabidopsis thaliana. Journal of Ecology 112, 14–27. doi: 10.1111/tpj.16345. open access

Shen, D., Wippel, K., Remmel, S., Zhang, Y., Kuertoes, N., Neumann, U., Kopriva, S., & Andersen, T. G. (2024). The Arabidopsis SGN3/GSO1 receptor kinase integrates soil nitrogen status into shoot development. The EMBO Journal 43: 2486 - 2505. https://doi.org/https://doi.org/10.1038/s44318-024-00107-3. open access

Shen, Q., Hasegawa, K., Oelerich, N., Prakken, A., Tersch, L. W., Wang, J., Reichhardt, F., Tersch, A., Choo, J. C., Timmers, T., Hofmann, K., Parker, J. E., Chai, J., & Maekawa, T. (2024). Cytoplasmic calcium influx mediated by plant MLKLs confers TNL-triggered immunity. Cell Host & Microbe 32: P453-465.e6, doi:10.1016/j.chom.2024.02.016. open access

Somssich, M. (2024). From the archives: male-female communication, glue that keeps cells together, and a SUPERMAN for all flowering plants. The Plant Cell, 795-796. doi:10.1093/plcell/koae019. open access

Song, W., Liu, L., Yu, D., Bernardy, H., Jirschitzka, J., Huang, S., Jia, A., Jemielniak, W., Acker, J., Lässle, H., Wang, J., Shen, Q., Chen, W., Li, P., Parker, J. E., Han, Z., Schulze-Lefert, P. and Chai. J. (2024) Substrate-induced condensation activates. plant TIR domain proteins. Nature 627: 847–853, doi: 10.1038/s41586-024-07183-9. open access

Valasiadis, D., Kollaros, M. G., Michailidis, M., Polychroniadou, C., Tanou, G., Bazakos, C., & Molassiotis, A. (2024). Wide-characterization of high and low dry matter kiwifruit through spatiotemporal multi-omic approach. Postharvest Biology and Technology, 209: 112727. doi:10.1016/j.postharvbio.2023.112727.

Vijaya Batthula, L.V., Russell, N.J., Bagde, S.R., Saint-Antoine, M., Brownfield, B., Mughal, S., Apprill, L. E., Khosla, A., Clark, F. K., Schwarz, E. M., Alseekh, S., Fernie, A.R., Singh, A., Schrick, K., Fromme, J. C., Skirycz, A., Formosa-Jordan, P., Roeder, A.H.R. (2024) The transcription factor ATML1 maintains giant cell identity by inducing synthesis of its own long-chain fatty acid-containing ligands. bioRxive, doi: /10.1101/2024.03.14.584694. open access

Wang, D., Wei, L., Ma, J., Wan, Y., Huang, K., Sun, Y., Wen, H., Chen, Z., Li, Z., Yu, D., Cui, H., Wu, J., Wu, Y., Kim, S. T., Zhao, J., Parker, J., Tsuda, K., Jiang, C., & Wang, Y. (2024). Bacillus cereus NJ01 induces SA- and ABA-mediated immunity against bacterial pathogens through the EDS1-WRKY18 module. Cell Reports, 43(4): 113985. doi:10.1016/j.celrep.2024.113985. open access

Wang, X., Yu, D., Yu, J., Hu, H., Hang, R., Amador, Z., Chen, Q., Chai, J., & Chen, X. (2024). Toll/interleukin-1 receptor (TIR) domain-containing proteins have NAD-RNA decapping activity. Nature Communications, 15(1): 2261. doi:10.1038/s41467-024-46499-y. open access

Wang, Y., Fuentes, R. R., van Rengs, W. M.J., Effgen, S., Zaidan, W., Franzen, R., Susanto, T., Fernandes, J. B., Mercier, R., Underwood, C. J. (2024) Harnessing clonal gametes in hybrid crops to engineer polyploid genomes. Nature Genetics 56, pages 1075–1079, doi: 10.1038/s41588-024-01750-6. open access

Watson, A. E., Guitton, B., Soriano, A., Rivallan, R., Vignes, H., Farrera, I., Huettel, B., Arnaiz, C., Falavigna, V., Coupel-Ledru, A., Segura, V., Sarah, G., Dufayard, J.-F., Sidibe-Bocs, S., Costes, E., & Andres, F. (2024). Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple. Frontiers in Plant Science, 15: 1352757. doi:10.3389/fpls.2024.1352757. open access

Xuan, Y. H., Wang, Y., Gao, L., & Gan, X. (2024). Editorial: Novel insights into the regulatory role of sugar and amino acids signaling in plant-microbe interactions. Frontiers in Plant Science, 14: 1261186. doi:10.3389/fpls.2023.1261186. open access

Zhang, M., & Marques, A. (2024). How plants with hundreds of centromeres crossover. Nature Plants, 10(3), 354-355. doi:10.1038/s41477-024-01646-7. https://doi.org/10.1038/s41477-024-01646-7

2023

Ai, H., Bellstaedt, J., Bartusch, K. S., Eschen-Lippold, L., Babben, S., Balcke, G. U., Tissier, A., Hause, B., Andersen, T. G., Delker, C., & Quint, M. (2023). Auxin-dependent regulation of cell division rates governs root thermomorphogenesis. The EMBO Journal, 42(11): e111926. doi:10.15252/embj.2022111926. open access

Andersen, T. G., & Vermeer, J. E. M. (2023). Bacterial gas-lighting of lateral root formation. PNAS, 120(17): e2303919120. doi:10.1073/pnas.2303919120. open access

Arlt, C., Wachtmeister, T., Koehrer, K., & Stich, B. (2023). Affordable, accurate and unbiased RNA sequencing by manual library miniaturization: A case study in barley. Plant Biotechnology Journal, 21(11), 2241-2253. doi:10.1111/pbi.14126. open access

Awad, M., Gan, X. GALA: a computational framework for de novo chromosome-by-chromosome assembly with long reads. Nat Commun 14, 204 (2023). https://doi.org/10.1038/s41467-022-35670-y. open access

Baumgarten, L., Pieper, B., Song, B., Mane, S., Lempe, J., Lamb, J., Cooke, E. L., Srivastava, R., Struett, S., Zanko, D., Casimiro, P. G. P., Hallab, A., Cartolano, M., Tattersall, A. D., Huettel, B., Filatov, D. A., Pavlidis, P., Neuffer, B., Bazakos, C., Schaefer, H., Mott, R., Gan, X., Alonso-Blanco, C., Laurent, S., & Tsiantis, M. (2023). Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns. PLoS Biology, 21(7): e3002191. doi:10.1371/journal.pbio.3002191. open access

Bhatia, N., Wilson-Sanchez, D., Strauss, S., Vuolo, F., Pieper, B., Hu, Z., Rambaud-Lavigne, L., & Tsiantis, M. (2023). Interspersed expression of CUP-SHAPED COTYLEDON2 and REDUCED COMPLEXITY shapes Cardamine hirsuta complex leaf form. Current Biology. doi:10.1016/j.cub.2023.06.037. open access

Bock, D. G., Liu, J., Novikova, P. Y., & Rieseberg, L. H. (2023). Long-read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity. Molecular Ecology, 32, 1229-1235. doi:10.1111/mec.16884. open access

Brazel, A. J., Fattorini, R., McCarthy, J., Franzen, R., Ruempler, F., Coupland, G., & O'Maoiléidigh, D. S. (2023). AGAMOUS mediates timing of guard cell formation during gynoecium development. PLoS Genetics, 19(10): e1011000. doi:10.1371/journal.pgen.1011000. open access

Campos Martin, R., Schmickler, S., Goel, M., Schneeberger, K., & Tresch, A. (2023). Reliable genotyping of recombinant genomes using a robust hidden Markov model. Plant Physiology, 192(2), 821-836. doi:10.1093/plphys/kiad191.

Cao, Y., Kümmel, F., Logemann, E., Gebauer, J. M., Lawson, A. W., Yu, D., Uthoff, M., Keller, B., Jirschitzka, J., Baumann, U., Tsuda, K., Chai, J., Schulze-Lefert, P. (2023) Structural polymorphisms within a common powdery mildew effector scaffold as a driver of co-evolution with cereal immune receptors, PNAS 120 (32) e2307604120. open access

Castellani, M., Zhang, M., Thangavel, G., Sucre, Y. M., Lux, T., Campoy, J. A., Marek, M., Huettel, B., Sun, H., Mayer, K. F. X., Schneeberger, K., Marques, A. (2023) Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning. bioRxiv 2023.04.28.538594; doi: 10.1101/2023.04.28.538594. open access

Castro N., Y. Mata-Sucre, J. Carvalho-Sobrinho, Marques, A., R. T. De Queiroz, Souza, G. (2023) Genomic stability in Cenostigma Tul., (Caesalpinioideae, Fabaceae): causes and consequences. Botanical Journal of the Linnean Society boad043. https://doi.org/10.1093/botlinnean/boad043. open access

Cerise, M., Falavigna, V. S., Rodríguez-Maroto, G., Signol, A., Severing, E., Gao, H., van Driel, A.,Vincent, C., Wilkens, S., Iacobini, F., Formosa-Jordan, P., Pajoro, A., Coupland, G., (2023). Two modes of gene regulation by TFL1 mediate its dual function in flowering time and shoot determinacy of Arabidopsis. Development 150(23):dev202089, doi:10.1242/dev.202089. open access

Chai J, Song W, Parker JE. 2023. New biochemical principles for NLR immunity in plants. Mol. Plant-Microbe Interact. 36: 468-475, doi: 10.1094/MPMI-05-23-0073-HH. open access

Costa, L., Marques, A., Buddenhagen, C. E., Pedrosa-Harand, A., & Souza, G. (2023). Investigating the diversification of holocentromeric satellite DNA Tyba in Rhynchospora (Cyperaceae). Annals of Botany, 131(5), 813-825. doi:10.1093/aob/mcad036. open access

Crean, E. E., Bilstein-Schloemer, M., Maekawa, T., Schulze-Lefert, P., Saur, I. M. L. 2023. A dominant-negative avirulence effector of the barley powdery mildew fungus provides mechanistic insight to barley MLA immune receptor activation. Journal of Experimental Botany 74 (18): 5854–5869, doi: 10.1093/jxb/erad285. open access

Cullen, E., Wang, Q., & Glover, B. J. (2023). How do you build a nectar spur? A transcriptomic comparison of nectar spur development in Linaria vulgaris and gibba development in Antirrhinum majus. Frontiers in Plant Science, 14: 1190373. doi:10.3389/fpls.2023.1190373. open access

Elfarargi, A.F., Gilbault, E., Döring, N., Neto, C., Fulgione, A., Weber, A.P.M., Loudet, O., Hancock, A.M. Genomic basis of adaptation to a novel precipitation regime. Molecular Biology and Evolution, 40(3) 2023, doi: doi.org/10.1093/molbev/msad031. open access

Escobar-Nino, A., Harzen, A., Stolze, S. C., Nakagami, H., & Fernandez-Acero, F. J. (2023). The Adaptation of Botrytis cinerea Extracellular Vesicles Proteome to Surrounding Conditions: Revealing New Tools for Its Infection Process. Journal of Fungi, 9(9): 872. doi:10.3390/jof9090872. open access

Escudero, M., Marques, A., Lucek, K., & Hipp, A. L. (2023). Genomic hotspots of chromosome rearrangements explain conserved synteny despite high rates of chromosome evolution in a holocentric lineage. Molecular Ecology, doi: 10.1111/mec.17086. open access

Feehan JM, Wang J, Sun X, Choi J, Ahn HK, Ngou BP, Parker JE, Jones JD. 2023. Oligomerization of a plant helper NLR requires cell-surface and intracellular immune receptor activation. Proc. Natl. Acad. Sci. USA 120 (11): e2210406120, doi: 10.1073/pnas.2210406120. open access

Foerderer, A., & Chai, J. (2023). Die another day: phytosulfokine at the molecular trade-off between growth and defense in plants. The EMBO Journal, 42(6): e113540. doi:10.15252/embj.2023113540

Formosa-Jordan, P., Holloway, D. M., & Diambra, L. (2023). Editorial: Pattern formation in biology. Frontiers in Physics, 11: 1161890. doi:10.3389/fphy.2023.1161890. open access

Formosa-Jordan, P. and Landrein, B. (2023) Quantifying gene expression domains in plant shoot apical meristems. In: Riechmann JL, Ferrandiz C (eds) Flower Development: Methods and Protocols. Methods in Molecular Biology, Second Edi, doi: 10.1007/978-1-0716-3299-4_25.

Frommer, B., Muellner, S., Holtgraewe, D., Viehoever, P., Huettel, B., Toepfer, R., Weisshaar, B., & Zyprian, E. (2023). Phased grapevine genome sequence of an Rpv12 carrier for biotechnological exploration of resistance to Plasmopara viticola. Frontiers in Plant Science, 14: 1180982. doi:10.3389/fpls.2023.1180982. open access

Gebhardt, C. (2023). A physical map of traits of agronomic importance based on potato and tomato genome sequences. Frontiers in Genetics, 14: 1197206. doi:10.3389/fgene.2023.1197206. open access

Getzke F, Hassani MA, Crüsemann M, Malisic M, Zhang P, Ishigaki Y, Böhringer N, Jiménez Fernández A, Wang L, Ordon J, Ma K-W, Thiergart T, Harbort CJ, Wesseler H, Miyauchi S, Garrido-Oter R, Shirasu K, Schäberle TF, Hacquard S*, Schulze-Lefert P*. (2023) Co-functioning of bacterial exometabolites drives root microbiota establishment. PNAS, 120 (15):e2221508120, doi: 10.1073/pnas.2221508120. *co-corresponding authors. open access

Giaume, F., Bono, G. A., Martignago, D., Miao, Y., Vicentini, G., Toriba, T., Wang, R., Kong, D., Cerise, M., Chirivi, D., Biancucci, M., Khahani, B., Morandini, P., Tameling, W., Martinotti, M., Goretti, D., Coupland, G., Kater, M., Brambilla, V., Miki, D., Kyozuka, J., & Fornara, F. (2023). Two florigens and a florigen-like protein form a triple regulatory module at the shoot apical meristem to promote reproductive transitions in rice. Nature Plants, 9(4), 525-534. doi:10.1038/s41477-023-01383-3. open access

Girard, C., D. Zwicker, and R. Mercier. 2023. The regulation of meiotic crossover distribution: a coarse solution to a century-old mystery? Biochemical Society Transactions 51: 1179-90. doi: 10.1042/BST20221329 open access

Griebel T, Lapin D, Locci F, Kracher B, Bautor J, Concia L, Benhamed M, Parker JE*. 2023. Arabidopsis Topless-related 1 mitigates physiological damage and growth penalties of induced immunity. New Phytologist. doi: 10.1111/nph.19054. open access

Hartwig, T., Banf, M., Passaia Prietsch, G., Zhu, J.-Y., Mora-Ramírez, I., Schippers, J. H. M., Snodgrass, S. J., Seetharam, A. S., Huettel, B., Kolkman, J. M., Yang, J., Engelhorn, J., Wang, Z.-W.: Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize. Genome Biology 2023. doi: 10.1186/s13059-023-02909-w. open access

Huang, S., Jia, A., Ma, S., Sun, Y., Chang, X., Han, Z., & Chai, J. (2023). NLR signaling in plants: from resistosomes to second messengers. Trends in biochemical sciences, 48(9), 776-787. doi:10.1016/j.tibs.2023.06.002. open access

Johanndrees, O., Baggs, E. L., Uhlmann, C., Locci, F., Laessle, H., Melkonian, K., Käufer, K., Dongus, J. A., Nakagami, H., Krasileva, K. V., Parker, J. E.*, & Lapin, D*. (2023). Variation in plant Toll/Interleukin-1 receptor domain protein dependence on ENHANCED DISEASE SUSCEPTIBILITY 1. Plant Physiology, 191: 626-642, kiac480, doi:10.1093/plphys/kiac480. open access

Kolesnikova, U. K., Scott, A. D., Van den Velde, J. D., Burns, R., Tikhomirov, N. P., Pfordt, U., Clarke, A. C., Yant, L., Seregin, A. P., Vekemans, X., Laurent, S., & Novikova, P. Y. (2023). Transition to Self-compatibility Associated With Dominant S-allele in a Diploid Siberian Progenitor of Allotetraploid Arabidopsis kamchatica Revealed by Arabidopsis lyrata Genomes. Molecular Biology & Evolution, 40(7): msad122. doi:10.1093/molbev/msad122. open access

Kuo, Y.-T, Souza Câmara, A., Schubert, V., Neumann, P., Macas, J., Melzer, M., Chen, J., Fuchs, J., Abel, S., Klocke, E., Huettel, B., Himmelbach, A., Demidov, D., Dunemann, F., Mascher, M., Ishii, T., Marques, A., Houben, A. (2023) Holocentromeres can consist of merely a few megabase-sized satellite arrays. Nature Communications 14, 3502, doi: 10.1038/s41467-023-38922-7. open access

Kusch, S., Qian, J., Loos, A., Kümmel, F., Spanu, P. D., & Panstruga, R. (2023). Long-term and rapid evolution in powdery mildew fungi. Molecular Ecology. doi:10.1111/mec.16909.

Lian, Q., Maestroni, L., Gaudin, M., Llorente, B., & Mercier, R. (2023). Meiotic recombination is confirmed to be unusually high in the fission yeast Schizosaccharomyces pombe. iScience, 26(9): 107614. doi:10.1016/j.isci.2023.107614. open access

Locci F, Wang J, Parker JE*. 2023. TIR-domain enzymatic activities at the heart of plant immunity. Curr. Opin. Plant Biol. 74:102373, doi: 10.1016/j.pbi.2023.102373. open access

Mahlandt, A., Singh, D. K., & Mercier, R. (2023). Engineering apomixis in crops. Theoretical and Applied Genetics, 136(6): 131. doi:10.1007/s00122-023-04357-3. open access

Marques, D. N., Mason, C., Stolze, S. C., Harzen, A., Nakagami, H., Skirycz, A., Piotto, F. A., & Antunes Azevedo, R. (2023). Grafting systems for plant cadmium research: Insights for basic plant physiology and applied mitigation. Science of the Total Environment, 892: 164610. doi:10.1016/j.scitotenv.2023.164610.

Martignago, D., da Silveira Falavigna, V., Lombardi, A., Gao, H., Kurkowski, P. K., Galbiati, M., Tonelli, C., Coupland, G., & Conti, L. (2023). The bZIP transcription factor AREB3 mediates FT signalling and floral transition at the Arabidopsis shoot apical meristem. PLoS Genetics, 19(5): e1010766. doi:10.1371/journal.pgen.1010766. open access

Mata-Sucre Y., W. Matzenauer, N. M. Souza Castro, B. Huettel, A. Pedrosa-Harand, Marques, A., Souza, G. (2023). Repeat-based phylogenomics shed light on unclear relationships in the monocentric genus Juncus L. (Juncaceae). Molecular Phylogenetics and Evolution 107930. doi: 10.1016/j.ympev.2023.107930.

Mesny F, Hacquard S, Thomma BPHJ. (2023) Co-evolution within the plant holobiont drives host performance. EMBO reports 24 (9), e57455. open access

Mueller, Y., Patwari, P., Stoecker, T., Zeisler-Diehl, V., Steiner, U., Campoli, C., Grewe, L., Kuczkowska, M., Dierig, M. M., Jose, S., Hetherington, A. M., Acosta, I. F., Schoof, H., Schreiber, L., & Doermann, P. (2023). Isolation and characterization of the gene HvFAR1 encoding acyl-CoA reductase from the cer-za.227 mutant of barley (Hordeum vulgare) and analysis of the cuticular barrier functions. New Phytologist, 239(5), 1903-1918. doi:10.1111/nph.19063. open access

Myers, Z. A., Wootan, C. M., Liang, Z., Zhou, P., Engelhorn, J., Hartwig, T., & Nathan, S. M. (2023). Conserved and variable heat stress responses of the Heat Shock Factor transcription factor family in maize and Setaria viridis. Plant Direct, 7(4): e489. doi:10.1002/pld3.489. open access

Neto, C., & Hancock, A. (2023). Genetic Architecture of Flowering Time Differs Between Populations With Contrasting Demographic and Selective Histories. Molecular Biology and Evolution, 40(8): msad185. doi:10.1093/molbev/msad185. open access

Nishikawa, M., Katsu, K., Koinuma, H., Hashimoto, M., Neriya, Y., Matsuyama, J., Yamamoto, T., Suzuki, M., Matsumoto, O., Matsui, H., Nakagami, H., Maejima, K., Namba, S., & Yamaji, Y. (2023). Interaction of EXA1 and eIF4E Family Members Facilitates Potexvirus Infection in Arabidopsis thaliana. Journal of Virology. doi:10.1128/jvi.00221-23.

Ordon, J., Kiel, N., Becker, D., Kretschmer, C., Schulze-Lefert, P., & Stuttmann, J. (2023). Targeted gene deletion with SpCas9 and multiple guide RNAs in Arabidopsis thaliana: four are better than two. Plant Methods, 19(1): 30, doi:10.1186/s13007-023-01010-4. open access

Peckham, M., Neumann, U., & Culley, S. (2023). Introduction to women in microscopy: Volume 1. Journal of Microscopy, Special Issue, 291(1), 3-4. doi:10.1111/jmi.13207.

Peng, H., Feng, H., Zhang, T., & Wang, Q. (2023). Plant defense mechanisms in plant-pathogen interactions. Frontiers in Plant Science, 14: 1292294. doi:10.3389/fpls.2023.1292294. open access

Prautsch, J., Erickson, J. L., Oezyuerek, S., Gormanns, R., Franke, L., Lu, Y., Marx, J., Niemeyer, F., Parker, J. E., Stuttmann, J., & Schattat, M. H. (2023). Effector XopQ-induced stromule formation in Nicotiana benthamiana depends on ETI signaling components ADR1 and NRG1. Plant Physiology, 191: 161-176, doi:10.1093/plphys/kiac481.

Russell, N. J., Schaare, H. L., Bellón Lara, B., Dang, Y., Feldmeier-Krause, A., Meemken, M.-T., & Oliveira-Lopes, F. N. (2023). Max Planck PostdocNet Survey Report 2022. doi:10.17617/2.3507886.

Saul, F., Scharmann, M., Wakatake, T. et al. (2023) Subgenome dominance shapes novel gene evolution in the decaploid pitcher plant Nepenthes gracilis. Nat. Plants, doi: 10.1038/s41477-023-01562-2. open access

Scott, A. D., Van den Velde, J. D., & Novikova, P. Y. (2023). Inference of Polyploid Origin and Inheritance Mode from Population Genomic Data. In Y. Van de Peer (Ed.), POLYPLOIDY: Methods and Protocols (pp. 279-295). New York: Humana Press.

Shi, W., Stolze, S. C., Nakagami, H., Misas Villamil, J. C., Saur, I. M. L., & Doehlemann, G. (2023). Combination of in vivo proximity labeling and co-immunoprecipitation identifies the host target network of a tumor-inducing effector in the fungal maize pathogen Ustilago maydis. Journal of Experimental Botany, 74(15), 4736-4750. doi:10.1093/jxb/erad188. open access

Singh, D. K., R. S. Gamboa, A. K. Singh, B. Walkemeier, J. Van Leene, G. De Jaeger, I. Siddiqi, R. Guerois, W. Crismani, and R. Mercier. 2023. The FANCC-FANCE-FANCF complex is evolutionarily conserved and regulates meiotic recombination. Nucleic Acids Research 51: 2516-28, doi: 10.1093/nar/gkac1244 open access

Singh, D. K., Lian, Q., Durand, S., Fernandes, J. B., Chambon, A., Hurel, A., Walkemeier, B., Solier, V., Kumar, R., & Mercier, R. (2023). HEIP1 is required for efficient meiotic crossover implementation and is conserved from plants to humans. Proceedings of the National Academy of Sciences of the United States of America, 120(23): e2221746120. doi:10.1073/pnas.2221746120. open access

Srivastava, R., Bazakos, C., Tsachaki, M., Zanko, D., Kalantidis, K., Tsiantis, M., et al. (2023). Genealogical Analyses of 3 Cultivated and 1 Wild Specimen of Vitis vinifera from Greece. Genome Biology and Evolution, 15(12): evad226. doi:10.1093/gbe/evad226. open access

Strütt, S., Sellinger, T., Glémin, S., Tellier, A., & Laurent, S. (2023). Joint inference of evolutionary transitions to self-fertilization and demographic history using whole-genome sequences. eLife, 12: e82384. doi:10.7554/eLife.82384. open access

Thangavel, G., Hofstatter, P.G., Mercier, R., Marques A. Tracing the evolution of the plant meiotic molecular machinery. Plant Reproduction (2023), doi: 10.1007/s00497-022-00456-1. open access

Vannier, N., Mesny, F., Getzke, F., Chesneau, G., Dethier, L., Ordon, J., Thiergart, T., Hacquard, S. (2023) Genome-resolved metatranscriptomics 1 reveals conserved root colonization determinants in a synthetic microbiota. Nature Communications 14:8271, doi: 10.1038/s41467-023-43688-z. open access

Vrielynck, N., Peuch, M., Durand, S., Lian, Q., Chambon, A., Hurel, A., Guerin, J., Guerois, R., Mercier, R., Grelon, M., & Mezard, C. (2023). SCEP1 and SCEP2 are two new components of the synaptonemal complex central element. Nature Plants, 9, 2016-2030. doi:10.1038/s41477-023-01558-y.

Wang, J., Song, W., & Chai, J. (2023). Structure, biochemical function, and signaling mechanism of plant NLRs. Molecular Plant, 16(1), 75-95. doi:10.1016/j.molp.2022.11.011. open access

Wang, Y., & Underwood, C. J. (2023). The Apomixis. Current Biology, 33(8). doi:10.3109/00207454.201.

Wanke, A., van Boerdonk, S., Mahdi, L. K., Wawra, S., Neidert, M., Chandrasekar, B., et al. (2023). A GH81-type β-glucan-binding protein enhances colonization by mutualistic fungi in barley. Current Biology, 33(23), 5071-5084.e7. doi:10.1016/j.cub.2023.10.048. open access

Weisweiler, M., & Stich, B. (2023). Benchmarking of structural variant detection in the tetraploid potato genome using linked-read sequencing. Genomics, 115(2): 110568. doi:10.1016/j.ygeno.2023.110568. open access

Wu, P., Stich, B., Renner, J., Muders, K., Prigge, V., & van Inghelandt, D. (2023). Optimal implementation of genomic selection in clone breeding programs-Exemplified in potato: I. Effect of selection strategy, implementation stage, and selection intensity on short-term genetic gain. The Plant Genome, 16(2): e20327. doi:10.1002/tpg2.20327. open access

Wu, Y., Sun, Y., Richet, E., Han, Z., & Chai, J. (2023). Structural basis for negative regulation of the Escherichia coli maltose system. Nature Communications, 14(1): 4925. doi:10.1038/s41467-023-40447-y. open access

Wunder, J., Fulgione, A., Toraeng, P., Woetzel, S., Herzog, M., Obeso, J. R., Kourmpetis, Y., van Ham, R., Odong, T., Bink, M., Kemi, U., Agren, J., & Coupland, G. (2023). Adaptation of perennial flowering phenology across the European range of Arabis alpina. Proceedings of the Royal Society of London Series B, 290(2011): 20231401, doi:10.1098/rspb.2023.1401. open access

Yotsui et al., LysM-mediated signaling in Marchantia polymorpha highlights the conservation of pattern-triggered immunity in land plants, Current Biology (2023), doi: 10.1016/j.cub.2023.07.068. open access

Yu, Y., Song, W., Zhai, N., Zhang, S., Wang, J., Wang, S., Liu, W., Huang, C.-H., Ma, H., Chai, J., & Chang, F. (2023). PXL1 and SERKs act as receptor-coreceptor complexes for the CLE19 peptide to regulate pollen development. Nature Communications, 14(1): 3307. doi:10.1038/s41467-023-39074-4. open access

Zeng Y, Zheng Z, Hessler G, Zou K, Bautor J, Stuttmann J, Xue L, Parker JE, Cui H. 2023. Arabidopsis PAD4 promotes the maturation and nuclear accumulation of immune-related cysteine protease RD19. J. Exp. Bot. doi.org/10.1093/jxb/erad454. op en access

Zuo, W., Depotter, J. R. L., Stolze, S. C., Nakagami, H., & Doehlemann, G. (2023). A transcriptional activator effector of Ustilago maydis regulates hyperplasia in maize during pathogen-induced tumor formation. Nature Communications, 14(1): 6722. doi:10.1038/s41467-023-42522-w. open access