Recent Scientific Publications

2022

Acevedo-Garcia, J., Walden, K., Leissing, F., Baumgarten, K., Drwiega, K., Kwaaitaal, M., Reinstädler, A., Freh, M., Dong, X., James, G.V., Baus, L.C., Mascher, M., Stein, N., Schneeberger, K., Brocke-Ahmadinejad, N., Kollmar, M., Schulze-Lefert, P., Panstruga, R. (2022) Barley Ror1 encodes a class XI myosin required for mlo-based broad-spectrum resistance to the fungal powdery mildew pathogen. Plant Journal, doi: 10.1111/tpj.15930. open access

Amanda, D., Frey, F. P., Neumann, U., Przybyl, M., Šimura, J., Zhang, Y., Chen, Z., Gallavotti, A., Fernie, A. R., Ljung, K., & Acosta, I. F. (2022). Auxin boosts energy generation pathways to fuel pollen maturation in barley. Current Biology. doi:10.1016/j.cub.2022.02.073. open access

Bourceret, A., Guan, R., Dorau, K., Mansfeldt, T., Omidbakhshfard, A., Medeiros, D. B., Fernie, A. R., Hofmann, J., Sonnewald, U., Mayer, J., Gerlach, N., The RECONSTRUCT consortium, Bucher, M., Garrido Oter, R., Spaepen, S., & Schulze-Lefert, P. (2022). Maize Field Study Reveals Covaried Microbiota and Metabolic Changes in Roots over Plant Growth. mBio, e02584-21. doi:10.1128/mbio.02584-21. open access

Bowman, J. L., M. Arteaga-Vazquez, F. Berger, L. N. Briginshaw, P. Carella, A. Aguilar-Cruz, K. M. Davies, T. Dierschke, L. Dolan, A. E. Dorantes-Acosta, T. J. Fisher, E. Flores-Sandoval, K. Futagami, K. Ishizaki, R. Jibran, T. Kanazawa, H. Kato, T. Kohchi, J. Levins, S. S. Lin, H. Nakagami, R. Nishihama, F. Romani, S. Schornack, Y. Tanizawa, M. Tsuzuki, T. Ueda, Y. Watanabe, K. T. Yamato, and S. Zachgo. (2022)The renaissance and enlightenment of Marchantia as a model system.  Plant Cell. doi: 10.1093/plcell/koac219.

de la Torre, N. V., A. Vayssieres, E. Obeng-Hinneh, U. Neumann, Y. H. Zhou, A. Lazaro, A. Roggen, H. Q. Sun, S. C. Stolze, H. Nakagami, K. Schneeberger, T. Timmers, and M. C. Albani (2022) FLOWERING REPRESSOR AAA(+) ATPase 1 is a novel regulator of perennial flowering in Arabis alpina.  New Phytologist. doi: 10.1111/nph.18374.

Dongus JA, Bhandari DD, Penner E, Lapin D, Stolze SC, Harzen A, Patel M, Archer L, Dijkgraaf L, Shah J, Nakagami H, Parker JE. Cavity surface residues of PAD4 and SAG101 contribute to EDS1 dimer signaling specificity in plant immunity. 2022. Plant Journal 110:1415-1432, doi: 10.1111/tpj.15747. open acces

Durán, P., T. J. Ellis, T. Thiergart, J. Agren, and S. Hacquard (2022) Climate drives rhizosphere microbiome variation and divergent selection between geographically distant Arabidopsis populations.  New Phytologist. doi: 10.1111/nph.18357.

Durán, P., Flores-Uribe, J., Wippel, K., Zhang, P., Guan, R., Melkonian, B., Melkonian, M., Garrido-Oter, R. (2022) Shared features and reciprocal complementation of the Chlamydomonas and Arabidopsis microbiota. Nature Communications 13, 406, doi: 10.1038/s41467-022-28055-8. open access

Förderer, A., Yu, D., Li, E., Chai, J. (2022) Resistosomes at the interface of pathogens and plants. Current Opinion in Plant Biology 67, 102212, doi: 10.1016/j.pbi.2022.102212.

Fulgione, A., Neto, C., Elfarargi, A. F., Tergemina, E., Ansari, S., Göktay, M., Dinis, H., Döring, N., Flood, P. J., Rodriguez-Pacheco, S., Walden, N., Koch, M., Roux, F., Hermisson, J., & Hancock, A. M. (2022). Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages. Nature Communications, 13(1): 1461. doi:10.1038/s41467-022-28800-z. open access

Gao, H., and G. Coupland (2022) PIF4 and CDF2 co-operate to regulate cell elongation in Arabidopsis thaliana. Nature Plants. doi: 10.1038/s41477-022-01220-z.

Gao, H., Song, W., Severing, E., Vaysières, A., Huettel, B., Franzen, R., Richter, R., Chai, J., Coupland, G. (2022) PIF4 enhances DNA binding by CDF2 to co-regulate target gene expression and promote Arabidopsis hypocotyl cell elongation. Nature Plants, doi: 10.1038/s41477-022-01213-y. open acces

Hofstatter, P. G., Thangavel, G., Lux, T., Neumann, P., Vondrak, T., Novak, P., Zhang, M., Costa, L., Castellani, M., Scott, A., Toegelová, H., Fuchs, J., Mata-Sucre, Y., Dias, Y., Vanzela, A. L. L., Huettel, B., Almeida, C. C. S., Šimková, H., Souza, G., Pedrosa-Harand, A., Macas, J., Mayer, K. F. X., Houben, A., & Marques, A. (2022). Repeat-based holocentromeres influence genome architecture and karyotype evolution. Cell. doi:10.1016/j.cell.2022.06.045. open acces

Huang, S., Jia, A., Song, W., Hessler, G., Meng, Y., Sun, Y., Xu, L., Laessle, H., Jirschitzka, J., Ma, S., Xiao, Y., Yu, D., Hou, J., Liu, R., Sun, H., Liu, X., Han, Z., Chang, J., Parker, J. E., & Chai, J. (2022). Identification and receptor mechanism of TIR-catalyzed small molecules in plant immunity. Science, doi 10.1126/science.abq3297.

Jia, A., Huang, S., Song, W., Wang, J., Meng, Y., Sun, Y., Xu, L., Laessle, H., Jirschitzka, J., Hou, J., Zhang, T., Yu, W., Hessler, G., Li, E., Ma, S., Yu, D., Gebauer, J., Baumann, U., Liu, X., Han, Z., Chang, J., Parker, J. E., & Chai, J. (2022). TIR-catalyzed ADP-ribosylation reactions produce signaling molecules for plant immunity. Science. Doi: 10.1126/science.abq8180.

Lian, Q. C., V. Solier, B. Walkemeier, S. Durand, B. Huettel, K. Schneeberger, and R. Mercier (2022) The megabase-scale crossover landscape is largely independent of sequence divergence. Nature Communications 13 (1). doi: 10.1038/s41467-022-31509-8.

Ma, K.-W., Ordon, J., & Schulze-Lefert, P. (2022). Gnotobiotic Plant Systems for Reconstitution and Functional Studies of the Root Microbiota. Current Protocols 2: e362. doi:10.1002/cpz1.362. open access

Meyer, F., et al (2022). Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods 19(4):429-440,  doi: 10.1038/s41592-022-01431-4. open access

Modesto, I., V. Inacio, P. Novikova, I. Carrasquinho, Y. Van de Peer, and C. M. Miguel (2022) SNP Detection in Pinus pinaster Transcriptome and Association with Resistance to Pinewood Nematode. Forests 13 (6). doi: 10.3390/f13060946.

Platre, M. P., S. B. Satbhai, L. Brent, M. F. Gleason, M. Cao, M. Grison, M. Glavier, L. Zhang, C. Gaillochet, C. Goeschl, M. Giovannetti, B. Enugutti, J. Neveu, M. von Reth, R. Alcazar, J. E. Parker, G. Vert, E. Bayer, and W. Busch (2022) The receptor kinase SRF3 coordinates iron-level and flagellin dependent defense and growth responses in plants. Nature Communications 13 (1). doi: 10.1038/s41467-022-32167-6.

Pérez-Antón M, Schneider I, Kroll P, Hofhuis H, Metzger S, Pauly M, Hay A. Explosive seed dispersal depends on SPL7 to ensure sufficient copper for localized lignin deposition via laccases. Proc Natl Acad Sci U S A. 2022 Jun 14;119(24):e2202287119. doi: 10.1073/pnas.2202287119. open access

Saur, I.M.L., Lawson, A.W. & Schulze-Lefert, P. (2022) Buy one, get two. Nature Plants, doi: 10.1038/s41477-022-01097-y. open access

Schmitz, R.J., Marand, A.P., Zhang, X., Mosher, R.A., Turck, F., Chen, X., Axtell, M.J., Zhong, X., Brady, S.M., Megraw, M., Meyers, B.C. (2022) Quality control and evaluation of plant epigenomics data. Plant Cell 34: 503-513, doi: 10.1093/plcell/koab255.  open access

Schulten, A., B. Pietzenuk, J. Quintana, M. Scholle, R. Feil, M. Krause, M. Romera-Branchat, V. Wahl, E. Severing, G. Coupland, and U. Kramer (2022) Energy status-promoted growth and development of Arabidopsis require copper deficiency response transcriptional regulator SPL7.  Plant Cell. doi: 10.1093/plcell/koac215.

Singh, A. (2022 )GIGANTEA regulates lateral root formation by modulating auxin signaling in Arabidopsis thaliana. Plant Signaling & Behavior 17 (1). doi: 10.1080/15592324.2022.2096780.

Tergemina E, Elfarargi AF, Flis P, Fulgione A, Göktay M, Neto C, Scholle M, Flood PJ, Xerri SA, Zicola J, Döring N, Dinis H, Krämer U, Salt DE, Hancock AM. (2022) A two-step adaptive walk rewires nutrient transport in a challenging edaphic environment. Science Advances 20;8(20):eabm9385. doi: 10.1126/sciadv.abm9385.open access

Tzortzakis, N.; Pitsikoulaki, G.; Stamatakis, A.; Chrysargyris, A. (2022) Ammonium to Total Nitrogen Ratio Interactive Effects with Salinity Application on Solanum lycopersicum Growth, Physiology, and Fruit Storage in a Closed Hydroponic System. Agronomy 12, 386. https://doi.org/10.3390/agronomy12020386. open access

van Rengs, W. M. J., Schmidt, M.-H.-W., Effgen, S., Le, D. B., Wang, Y., Zaidan, M. W. A., Huettel, B., Schouten, H. J., Usadel, B., & Underwood, C. J. (2022). A chromosome scale tomato genome built from complementary PacBio and Nanopore sequences alone reveals extensive linkage drag during breeding. The Plant Journal. doi:10.1111/tpj.15690. open access

Wang, Y., Strauss, S., Liu, S., Pieper, B., Lymbouridou, R., Runions, A., Tsiantis, M. (2022) The cellular basis for synergy between RCO and KNOX1 homeobox genes in leaf shape diversity.
Current Biology, doi: 10.1016/j.cub.2022.08.020.

Yu D, Song W, Tan EYJ, Liu L, Cao Y, Jirschitzka J, Li E, Logemann E, Xu C, Huang S, Jia A, Chang X, Han Z, Wu B, Schulze-Lefert P, Chai J. TIR domains of plant immune receptors are 2',3'-cAMP/cGMP synthetases mediating cell death. Cell. 2022 May 13:S0092-8674(22)00530-X. doi: 10.1016/j.cell.2022.04.032.

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