MPIPZ Scientific Publications since 2002

Journal Article (140)

Journal Article
Adibi, M.; Yoshida, S.; Weijers, D.; Fleck, C.: Centering the Organizing Center in the Arabidopsis thaliana Shoot Apical Meristem by a Combination of Cytokinin Signaling and Self-Organization. PLOS ONE 11 (2), e0147830 (2016)
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Agler, M.T.; Ruhe, J.; Kroll, S.; Morhenn, C.; Kim, S.-T.; Weigel, D.; Kemen, E.: Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation. PLoS Biology 14 (1), e1002352 (2016)
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Alles, J.; Menegatti, J.; Motsch, N.; Hart, M.; Reinhardt, R.; Eichner, N.; Meister, G.; Grässer, F. A.: miRNA expression profiling of Epstein-Barr virus-associated NKTL cell lines by Illumina deep sequencing. Febs Open Bio 6, pp. 251 - 263 (2016)
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Alonso-Blanco, C.; Andrade, J.; Becker, C.; Bemm, F.; Bergelson, J.; Borgwardt, K. M.; Cao, J.; Chae, E.; Dezwaan, T. M.; Ding, W. et al.; Ecker, J. R.; Exposito-Alonso, M.; Farlow, A.; Fitz, J.; Gan, X.; Grimm, D. G.; Hancock, A. M.; Henz, S. R.; Holm, S.; Horton, M.; Jarsulic, M.; Kerstetter, R. A.; Korte, A.; Korte, P.; Lanz, C.; Lee, C.-R.; Meng, D.; Michael, T. P.; Mott, R.; Muliyati, N.W.; Nägele, T.; Nagler, M.; Nizhynska, V.; Nordborg, M.; Novikova, P. Y.; Picó, F. X.; Platzer, A.; Rabanal, F. A.; Rodriguez, A.; Rowan, B. A.; Salomé, P. A.; Schmid, K. J.; Schmitz, R. J.; Seren, Ü.; Sperone, F. G.; Sudkamp, M.; Svardal, H.; Tanzer, M. M.; Todd, D.; Volchenboum, S. L.; Wang, C.; Wang, G.; Wang, X.; Weckwerth, W.; Weigel, D.; Zhou, X.: 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell 166, pp. 481 - 491 (2016)
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Alves, R. N.; Gomes, A. S.; Stueber, K.; Tine, M.; Thorne, M. A. S.; Smaradottir, H.; Reinhardt, R.; Clark, M. S.; Ronnestad, I.; Power, D. M.: The transcriptome of metamorphosing flatfish. BMC Genomics 17, 413 (2016)
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Azevedo, H.; Azinheiro, S. G.; Munoz-Merida, A.; Castro, P. H.; Huettel, B.; Aarts, M. G. M.; Assuncao, A. G. L.: Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. GENOMICS DATA 7, pp. 256 - 258 (2016)
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Bar, M.; Israeli, A.; Levy, M.; Ben Gera, H.; Jimenez-Gomez, J. M.; Kouril, S.; Tarkowski, P.; Ori, N.: CLAUSA Is a MYB Transcription Factor That Promotes Leaf Differentiation by Attenuating Cytokinin Signaling. Plant Cell 28 (7), pp. 1602 - 1615 (2016)
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Bassel, G. W.; Smith, R. S.: Quantifying morphogenesis in plants in 4D. Current Opinion in Plant Biology 29, pp. 87 - 94 (2016)
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Beil-Wagner, J.; Doessinger, G.; Schober, K.; vom Berg, J.; Tresch, A.; Grandl, M.; Palle, P.; Mair, F.; Gerhard, M.; Becher, B. et al.; Busch, D. H.; Buch, T.: T cell-specific inactivation of mouse CD2 by CRISPR/Cas9. Scientific Reports 6, 21377 (2016)
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Bewick, A.; Ji, L.; Niederhuth, C.; Willing, E.-M.; Hofmeister, B. T.; Shi, X.; Wang, L.; Lu, Z.; Rohr, N.; Hartwig, B. et al.; Kiefer, C.; Deal, R. B.; Schmutz, J.; Grimwood, J.; Stroud, H.; Jacobsen, S. E.; Schneeberger, K.; Zhang, X.; Schmitz, R. J.: On the origin and evolutionary consequences of gene body DNA methylation. Proceedings of the National Academy of Sciences of the United States of America 113 (32), pp. 9111 - 9116 (2016)
Journal Article
Blättner, S.; Das, S.; Paprotka, K.; Eilers, U.; Krischke, M.; Kretschmer, D.; Remmele, C.W.; Dittrich, M.; Müller, T.; Schuelein-Voelk, C. et al.; Hertlein, T.; Huettel, B.; Reinhardt, R.; Ohlsen, K.; Rudel, T.; Fraunholz, M.J.: Staphylococcus aureus Exploits a Non-ribosomal Cyclic Dipeptide to Modulate Survival within Epithelial Cells and Phagocytes. PLoS Pathogens 12, e1005857 (2016)
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Bucher, M.; Fabianska, I.: Long-Sought Vacuolar Phosphate Transporters Identified. Trends in Plant Science 21, pp. 463 - 466 (2016)
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Cao, D.; Xu, H.; Zhao, Y.; Deng, X.; Liu, Y.; Soppe, W.; Lin, J.: ranscriptome and degradome sequencing reveals dormancy mechanisms of Cunninghamia lanceolate seeds. Plant Physiology 172, pp. 2347 - 2362 (2016)
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Cartolano, M.; Huettel, B.; Hartwig, B.; Reinhardt, R.; Schneeberger, K.: cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing. PLoS One 11 (6), e0157779 (2016)
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Chandrasekar, B.; Van der Hoorn, R. A. L.: Beta galactosidases in Arabidopsis and tomato - a mini review. Biochemical Society Transactions (London) 44, pp. 150 - 158 (2016)
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Clarke, W. E.; Higgins, E. E.; Plieske, J.; Wieseke, R.; Sidebottom, C.; Khedikar, Y.; Batley, J.; Edwards, D.; Meng, J.; Li, R. et al.; Lawley, C. T.; Pauquet, J.; Laga, B.; Cheung, W.; Iniguez-Luy, F.; Dyrszka, E.; Rae, S.; Stich, B.; Snowdon, R.J.; Sharpe, A.G.; Ganal, M. W.; Parkin, I. A. P.: A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome. Theoretical and Applied Genetics 129 (10), pp. 1887 - 1899 (2016)
Journal Article
Couto, D.; Niebergall, R.; Liang, X.; Bucherl, C. A.; Sklenar, J.; Macho, A. P.; Ntoukakis, V.; Derbyshire, P.; Altenbach, D.; Maclean, D. et al.; Robatzek, S.; Uhrig, J.; Menke, F.; Zhou, J.-M.; Zipfel, C.: The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1. PLoS Pathogens 12 (8), e1005811 (2016)
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Das, S.; Lindemann, C.; Young, B.C.; Muller, J.; Österreich, B.; Ternette, N.; Winkler, A.-C.; Paprotka, K.; Reinhardt, R.; Förstner, K.U. et al.; Allen, E.; Flaxman, A.; Yamaguchi, Y.; Rollier, C.S.; Diemen, P.V.; Blättner, S.; Remmele, C.W.; Selle, M.; Dittrich, M.; Müller, T.; Vogel, J.; Ohlsen, K.; Crook, D.W.; Massey, R.; Wilson, D.J.; Rudel, T.; Wyllie, D.H.; Fraunholz, M.J.: Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation. Proceedings of the National Academy of Sciences of the United States of America 113 (22), pp. E3101 - E3110 (2016)
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Digel, B.; Tavakol, E.; Verderio, G.; Tondelli, A.; Xu, X.; Cattivelli, L.; Rossini, L.; von Korff, M.: Photoperiod-H1 (Ppd-H1) Controls Leaf Size. Plant Physiology 172, pp. 405 - 415 (2016)
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Dörries, M.; Wöhlbrand, L.; Kube, M.; Reinhardt, R.; Rabus, R.: Genome and catabolic subproteomes of the marine, nutritionally versatile, sulfate-reducing bacterium Desulfococcus multivorans DSM 2059. BMC Genomics 19, 918 (2016)
Journal Article
Dose, A.; Sindlinger, J.; Bierlmeier, J.; Bakirbas, A.; Schulze-Osthoff, K.; Einsele-Scholz, S.; Hartl, M.; Essmann, F.; Finkemeier, I.; Schwarzer, D.: Interrogating Substrate Selectivity and Composition of Endogenous Histone Deacetylase Complexes with Chemical Probes. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 55 (3), pp. 1192 - 1195 (2016)
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Dugar, G.; Svensson, S. L.; Bischler, T.; Waeldchen, S.; Reinhardt, R.; Sauer, M.; Sharma, C. M.: The CsrA-FliW network controls polar localization of the dual-function flagellin mRNA in Campylobacter jejuni. Nature Communications 7, 11667 (2016)
Journal Article
Dursun, E.; Endele, M.; Musumeci, A.; Failmezger, H.; Wang, S.-H.; Tresch, A.; Schroeder, T.; Krug, A. B.: Continuous single cell imaging reveals sequential steps of plasmacytoid dendritic cell development from common dendritic cell progenitors. Scientific Reports 6, 37462 (2016)
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Faden, F.; Ramezan, T.; Mielke, S.; Almudi, I.; Nairz, K.; Froehlich, M. S.; Hoeckendorff, J.; Brandt, W.; Hoehenwarter, W.; Dohmen, R. J. et al.; Schnittger, A.; Dissmeyer, N.: Phenotypes on demand via switchable target protein degradation in multicellular organisms. Nature Communications 7, 12202 (2016)
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Fernandez, V.; Takahashi, Y.; Le Gourrierec, J.; Coupland, G.: Photoperiodic and thermosensory pathways interact through CONSTANS to promote flowering at high temperature under short days. The Plant journal: for cell and molecular biology 86 (5), pp. 426 - 40 (2016)
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Flood, P.; Kruijer, W.; Schnabel, S. K.; van der Schoor, R.; Jalink, H.; Snel, J. F. H.; Harbinson, J.; Aarts, M. G. M.: Phenomics for photosynthesis, growth and reflectance in Arabidopsis thaliana reveals circadian and long-term fluctuations in heritability. Plant Methods 12, 14 (2016)
Journal Article
Flood, P.; van Heerwaarden, J.; Becker, F.; de Snoo, C. B.; Harbinson, J.; Aarts, M. G. M.: Whole-Genome Hitchhiking on an Organelle Mutation. Current Biology 26 (10), pp. 1306 - 1311 (2016)
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Foerderer, A.; Zhou, Y.; Turck, F.: The age of multiplexity: recruitment and interactions of Polycomb complexes in plants. Current Opinion in Plant Biology 29, pp. 169 - 178 (2016)
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Forat, S.; Huettel, B.; Reinhardt, R.; Fimmers, R.; Haidl, G.; Denschlag, D.; Olek, K.: Methylation Markers for the Identification of Body Fluids and Tissues from Forensic Trace Evidence. PLoS One 11 (2), e0147973 (2016)
Journal Article
Fragkostefanakis, S.; Mesihovic, A.; Simm, S.; Paupiere, M. J.; Hu, Y.; Paul, P.; Mishra, S. K.; Tschiersch, B.; Theres, K.; Bovy, A. et al.; Schleiff, E.; Scharf, K.-D.: HsfA2 Controls the Activity of Developmentally and Stress-Regulated Heat Stress Protection Mechanisms in Tomato Male Reproductive Tissues. Plant Physiology 170 (4), pp. 2461 - 2477 (2016)
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Fransz, P.; Linc, G.; Lee, C.-R.; Aflitos, S. A.; Lasky, J. R.; Toomajian, C.; Ali, H.; Peters, J.; van Dam, P.; Ji, X. et al.; Kuzak, M.; Gerats, T.; Schubert, I.; Schneeberger, K.; Colot, V.; Martienssen, R.; Koornneef, M.; Nordborg, M.; Juenger, T. E.; de Jong, H.; Schranz, M. E.: Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. The Plant Journal 88 (2), pp. 159 - 178 (2016)
Journal Article
Frerichs, A.; Thoma, R.; Abdallah, A. T.; Frommolt, P.; Werr, W.; Chandler, J. W.: The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem. BMC Genomics 17, 855 (2016)
Journal Article
Frey, F. P.; Presterl, T.; Lecoq, P.; Orlik, A.; Stich, B.: First steps to understand heat tolerance of temperate maize at adult stage: identification of QTL across multiple environments with connected segregating populations. Theoretical and Applied Genetics 129 (5), pp. 945 - 961 (2016)
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Gan, X.; Hay, A.; Kwantes, M.; Haberer, G.; Hallab, A.; Dello Ioio, R.; Hofhuis, H.; Pieper, B.; Cartolano, M.; Neumann, U. et al.; Nikolov, L. A.; Song, B.; Hajheidari, M.; Briskine, R.; Kougioumoutzi, E.; Vlad, D.; Broholm, S.; Hein, J.; Meksem, K.; Lightfoot, D.; Shimizu, K. K.; Shimizu-Inatsugi, R.; Imprialou, M.; Kudrna, D.; Wing, R.; Sato, S.; Huijser, P.; Filatov, D.; Mayer, K. F. X.; Mott, R.; Tsiantis, M.: The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants 2 (10), 16167 (2016)
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Gebhardt, C.: The historical role of species from the Solanaceae plant family in genetic research. Theoretical and Applied Genetics 129 (12), pp. 2281 - 2294 (2016)
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Glas, J.; Duemcke, S.; Zacher, B.; Poron, D.; Gagneur, J.; Tresch, A.: Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model. Nucleic Acids Research (London), 10.1093/nar/gkv1184 (2016)
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Gupta, R.; Min, C. W.; Wang, Y.; Kim, Y. C.; Agrawal, G. K.; Rakwal, R.; Kim, S. T.: Expect the Unexpected Enrichment of "Hidden Proteome" of Seeds and Tubers by Depletion of Storage Proteins. Frontiers in Plant Science 7, 761 (2016)
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Hacquard, S.: Disentangling the factors shaping microbiota composition across the plant holobiont. New Phytologist 209 (2), pp. 454 - 457 (2016)
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Hacquard, S.; Kracher, B.; Hiruma, K.; Muech, P. C.; Garrido Oter, R.; Thon, M. R.; Weimann, A.; Damm, U.; Dallery, J.-F.; Hainaut, M. et al.; Henrissat, B.; Lespinet, O.; Sacristan, S.; Ver Loren van Themaat, E.; Kemen, E.; McHardy, A. C.; Schulze-Lefert, P.; O'Connell, R. J.: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi. Nature Communications 7, 11362 (2016)
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Hancock, A.: How conifers adapt to the cold. Science Magazine 353 (6306), pp. 1362 - 1363 (2016)
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Hancock, A.: Rapid adaptation to climate change. Molecular Ecology 25 (15), pp. 3525 - 3526 (2016)
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Harashima, H.; Dissmeyer, N.; Hammann, P.; Nomura, Y.; Kramer, K.; Nakagami, H.; Schnittger, A.: Modulation of plant growth in vivo and identification of kinase substrates using an analog-sensitive variant of CYCLIN-DEPENDENT KINASE A;1. BMC Plant Biology 16, 209 (2016)
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Hay, A.; Tsiantis, M.: Cardamine hirsuta: a comparative view. Current Opinion in Genetics & Development 39, pp. 1 - 7 (2016)
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Hayward, A. P.; Moreno, M. A.; Howard III, T. P.; Hague, J.; Nelson, K.; Heffelfinger, C.; Romero, S.; Kausch, A. P.; Glauser, G.; Acosta, I. F. et al.; Mottinger, J. P.; Dellaporta, S. L.: Control of sexuality by the sk1-encoded UDP-glycosyltransferase of maize. Science Advances 2 (10), e1600991 (2016)
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He, F.; Arce, A. L.; Schmitz, G.; Koornneef, M.; Novikova, P.; Beyer, A.; de Meaux, J.: The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus. Molecular Biology and Evolution 33 (8), pp. 2088 - 2101 (2016)
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Heidel, A. J.; Kiefer, C.; Coupland, G.; Rose, L. E.: Pinpointing genes underlying annual/perennial transitions with comparative genomics. BMC Genomics 17, 921 (2016)
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Hervieux, N.; Dumond, M.; Sapala, A.; Routier-Kierzkowska, A.-L.; Kierzkowski, D.; Roeder, A. H. K.; Smith, R. S.; Boudaoud, A.; Hamant, O.: A Mechanical Feedback Restricts Sepal Growth and Shape in Arabidopsis. Current Biology 26 (8), pp. 1019 - 1028 (2016)
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Hiruma, K.; Gerlach, N.; Sacristan, S.; Nakano, R. T.; Hacquard, S.; Kracher, B.; Neumann, U.; Ramirez, D.; Bucher, M.; O'Connell, R. J. et al.; Schulze-Lefert, P.: Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent. Cell 165 (2), pp. 464 - 474 (2016)
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Hoenicka, H.; Lehnhardt, D.; Nunna, S.; Reinhardt, R.; Jeltsch, A.; Briones, V.; Fladung, M.: Level of tissue differentiation influences the activation of a heat-inducible flower-specific system for genetic containment in poplar (Populus tremula L.). Plant Cell Reports 35, pp. 369 - 384 (2016)
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Hofhuis, H.; Moulton, D.; Lessinnes, T.; Routier-Kierzkowska, A.-L.; Bomphrey, R.J.; Mosca, G.; Reinhardt, H. C.; Sarchet, P.; Gan, X.; Tsiantis, M. et al.; Ventikos, Y.; Walker, S.; Goriely, A.; Smith, R. S.; Hay, A.: Morphomechanical Innovation Drives Explosive Seed Dispersal. Cell 166 (1), pp. 222 - 33 (2016)
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