Scientific Publications since 2002

Scientific Publications since 2002

Journal Article (106)

  1. Journal Article
    Andrés, F. L.; Romera Branchat, M.; Martinez-Gallegos, R.; Patel, V.; Schneeberger, K.; Jang, S.; Altmuller, J.; Nurnberg, P.; Coupland, G.: Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant physiology 169 (3), pp. 2187 - 99 (2015)
  2. Journal Article
    Bai, Y.; Mueller, D. B.; Srinivas, G.; Garrido Oter, R.; Potthoff, E.; Rott, M.; Dombrowski, N.; Muench, P. C.; Spaepen, S.; Remus-Emsermann, M. et al.; Huettel, B.; McHardy, A. C.; Vorholt, J. A.; Schulze-Lefert, P.: Functional overlap of the Arabidopsis leaf and root microbiota. Nature 528 (7582), pp. 364 - 369 (2015)
  3. Journal Article
    Baranauske, S.; Mickute, M.; Plotnikova, A.; Finke, A.; Venclovas, C.; Klimasauskas, S.; Vilkaitis, G.: Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins. Nucleic Acids Research (London) 43 (5), pp. 2802 - 2812 (2015)
  4. Journal Article
    Barbier de Reuille, P.; Routier-Kierzkowska, A.-L.; Kierzkowski, D.; Bassel, G. W.; Schuepbach, T.; Tauriello, G.; Bajpai, N.; Strauss, S.; Weber, A.; Kiss, A. et al.; Burian, A.; Hofhuis, H.; Sapala, A.; Lipowczan, M.; Heimlicher, M. B.; Robinson, S.; Bayer, E. M.; Basler, K.; Koumoutsakos, P.; Roeder, A. H. K.; Aegerter-Wilmsen, T.; Nakayama, N.; Tsiantis, M.; Hay, A.; Kwiatkowska, D.; Xenarios, I.; Kuhlemeier, C.; Smith, R. S.: MorphoGraphX: A platform for quantifying morphogenesis in 4D. ELIFE 4 (2015)
  5. Journal Article
    Barboza Barquero, L.; Nagel, K.A.; Jansen , M.; Klasen, J. R.; Kastenholz, B.; Braun, S.; Bleise, B.; Brehm, T.; Koornneef, M.; Fiorani, F.: Phenotype of Arabidopsis thaliana semi-dwarfs with deep roots and high growth rates under water limiting conditions is independent from the GA5 loss-of-function alleles. Annals of Botany (116), pp. 321 - 331 (2015)
  6. Journal Article
    Benke, A.; Urbany, C.; Stich, B.: Genome-wide association mapping of iron homeostasis in the maize association population. BMC GENETICS 16 (2015)
  7. Journal Article
    Bours, R.; Kohlen, W.; Bouwmeester, H. J.; van der Krol, A.: Thermoperiodic Control of Hypocotyl Elongation Depends on Auxin-Induced Ethylene Signaling That Controls Downstream PHYTOCHROME INTERACTING FACTOR3 Activity. Plant Physiology 167 (2), pp. 517 - 530 (2015)
  8. Journal Article
    Bratzel, F.; Turck, F.: Molecular memories in the regulation of seasonal flowering: from competence to cessation. Genome Biology 16 (16) (2015)
  9. Journal Article
    Brockington, S. F.; Moyroud, E.; Sayou, C.; Monniaux, M.; Nanao, M. H.; Thevenon, E.; Chahtane, H.; Warthmann, N.; Melkonian, M.; Zhang, Y. et al.; Wong, G. K.-S.; Weigel, D.; Dumas, R.; Parcy, F.: EVOLUTION Response to Comment on "A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity". SCIENCE 347 (347), p. 621 - 621 (2015)
  10. Journal Article
    Bühler, J.; Rishmawi, L.; Pflugfelder, D.; Huber, G.; Scharr, H.; Hülskamp, M.; Koornneef, M.; Schurr, U.; Jahnke, S.: phenoVein - A tool for leaf vein segmentation and analysis. Plant Physiology 169 (4), pp. 2359 - 2370 (2015)
  11. Journal Article
    Bulgarelli, D.; Garrido Oter, R.; Muench, P. C.; Weiman, A.; Droege, J.; Pan, Y.; McHardy, A. C.; Schulze-Lefert, P.: Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley. Cell Host & Microbe 17 (3), pp. 392 - 403 (2015)
  12. Journal Article
    Cai, N.; Chang, S.; Li, Y.; Li, Q.; Hu, J.; Liang, J.; Song, L.; Kretzschmar, W.; Gan, X.; Nicod, J. et al.; Rivera, M.; Deng, H.; Du, B.; Li, K.; Sang, W.; Gao, J.; Gao, S.; Ha, B.; Ho, H.-Y.; Hu, C.; Hu, J.; Hu, Z.; Huang, G.; Jiang, G.; Jiang, T.; Jin, W.; Li, G.; Li, K.; Li, Y.; Li, Y.; Li, Y.; Lin, Y.-T.; Liu, L.; Liu, T.; Liu, Y.; Liu, Y.; Lu, Y.; Lv, L.; Meng, H.; Qian, P.; Sang, H.; Shen, J.; Shi, J.; Sun, J.; Tao, M.; Wang, G.; Wang, G.; Wang, J.; Wang, L.; Wang, X.; Wang, X.; Yang, H.; Yang, L.; Yin, Y.; Zhang, J.; Zhang, K.; Sun, N.; Zhang, W.; Zhang, X.; Zhang, Z.; Zhong, H.; Breen, G.; Wang, J.; Marchini, J.; Chen, Y.; Xu, Q.; Xu, X.; Mott, R.; Huang, G.-J.; Kendler, K.; Flintl, J.: Molecular Signatures of Major Depression. CURRENT BIOLOGY 25 (9), pp. 1146 - 1156 (2015)
  13. Journal Article
    Cai, N.; Bigdeli, T. B.; Kretzschmar, W.; Li, Y.; Liang, J.; Song, L.; Hu, J.; Li, Q.; Jin, W.; Hu, Z. et al.; Wang, G.; Wang, L.; Qian, P.; Liu, Y.; Jiang, T.; Lu, Y.; Zhang, X.; Yin, Y.; Li, Y.; Xu, X.; Gao, J.; Reimers, M.; Webb, T.; Riley, B.; Bacanu, S.; Peterson, R. E.; Chen, Y.; Zhong, H.; Liu, Z.; Wang, G.; Sun, J.; Sang, H.; Jiang, G.; Zhou, X.; Li, Y.; Li, Y.; Zhang, W.; Wang, X.; Fang, X.; Pan, R.; Miao, G.; Zhang, Q.; Hu, J.; Yu, F.; Du, B.; Sang, W.; Li, K.; Chen, G.; Cai, M.; Yang, L.; Yang, D.; Ha, B.; Hong, X.; Deng, H.; Li, G.; Li, K.; Song, Y.; Gao, S.; Zhang, J.; Gan, Z.; Meng, H.; Pan, J.; Gao, C.; Zhang, K.; Sun, N.; Li, Y.; Niu, Q.; Zhang, Y.; Liu, T.; Hu, C.; Zhang, Z.; Lv, L.; Dong, J.; Wang, X.; Tao, M.; Wang, X.; Xia, J.; Rong, H.; He, Q.; Liu, T.; Huang, G.; Mei, Q.; Shen, Z.; Liu, Y.; Shen, J.; Tian, T.; Liu, X.; Wu, W.; Gu, D.; Fu, G.; Shi, J.; Chen, Y.; Gan, X.; Liu, L.; Wang, L.; Yang, F.; Cong, E.; Marchini, J.; Yang, H.; Wang, J.; Shi, S.; Mott, R.; Xu, Q.; Wang, J.; Kendler, K. S.; Flint, J.: Sparse whole-genome sequencing identifies two loci for major depressive disorder. Nature 523 (7562), pp. 588 - + (2015)
  14. Journal Article
    Cao, H. X.; Schmutzer, T.; Scholz, U.; Pecinka, A.; Schubert, I.; Vu, G. T. H.: Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species. Frontiers in Microbiology 6 (2015)
  15. Journal Article
    Cartolano, M.; Pieper, B.; Lempe, J.; Tattersall, A.; Huijser, P.; Tresch, A.; Darrah, P. R.; Hay, A.; Tsiantis, M.: Heterochrony underpins natural variation in Cardamine hirsuta leaf form. Proceedings of the National Academy of Sciences of the United States of America 112 (33), pp. 10539 - 10544 (2015)
  16. Journal Article
    Cui, H.; Tsuda, K.; Parker, J. E.: Effector-Triggered Immunity: From Pathogen Perception to Robust Defense. ANNUAL REVIEW OF PLANT BIOLOGY, VOL 66, pp. 487 - 511 (2015)
  17. Journal Article
    de Montaigu, A.; Giakountis, A.; Rubin, M.; Toth, R.; Cremer, F.; Sokolova, V.; Porri, A.; Reymond, M.; Weinig, C.; Coupland, G.: Natural diversity in daily rhythms of gene expression contributes to phenotypic variation. Proceedings of the National Academy of Sciences of the United States of America 112 (3), pp. 905 - 910 (2015)
  18. Journal Article
    Delaplace, P.; Delory, B. M.; Baudson, C.; de Cazenave, M. M.-S.; Spaepen, S.; Varin, S.; Brostaux, Y.; du Jardin, P.: Influence of rhizobacterial volatiles on the root system architecture and the production and allocation of biomass in the model grass Brachypodium distachyon (L.) P. Beauv. BMC Plant Biology 15 (2015)
  19. Journal Article
    Deng, W.; Clausen, J.; Boden, S.; Oliver, S. N.; Casao, C. M.; Ford, B.; Anderssen, R. S.; Trevaskis, B.: Dawn and Dusk Set States of the Circadian Oscillator in Sprouting Barley (Hordeum vulgare) Seedlings. PLoS One 10 (6) (2015)
  20. Journal Article
    Digel, B.; Pankin, A.; von Korff, M.: Global Transcriptome Profiling of Developing Leaf and Shoot Apices Reveals Distinct Genetic and Environmental Control of Floral Transition and Inflorescence Development in Barley. The Plant cell 27 (9), pp. 2318 - 34 (2015)
  21. Journal Article
    El-Soda, M.; Kruijer, W.; Malosetti, M.; Koornneef, M.; Aarts, M. G. M.: Quantitative trait loci and candidate genes underlying genotype by environment interaction in the response of Arabidopsis thaliana to drought. Plant, Cell and Environment 38 (3), pp. 585 - 599 (2015)
  22. Journal Article
    Fischer, M.; Kuckenberg, M.; Kastilan, R.; Muth, J.; Gebhardt, C.: Novel in vitro inhibitory functions of potato tuber proteinaceous inhibitors. Molecular Genetics and Genomics 290 (1), pp. 387 - 398 (2015)
  23. Journal Article
    Fornara, F.; de Montaigu, A.; Sánchez Villarreal, A.; Takahashi, Y.; Ver Loren van Themaat, E.; Huettel, B.; Davis, S. J.; Coupland, G.: The GI-CDF module of Arabidopsis affects freezing tolerance and growth as well as flowering. The Plant Journal 81 (5), pp. 695 - 706 (2015)
  24. Journal Article
    Frey, F. P.; Urbany, C.; Huettel, B.; Reinhardt, R.; Stich, B.: Genome-wide expression profiling and phenotypic evaluation of European maize inbreds at seedling stage in response to heat stress. BMC Genomics 16 (2015)
  25. Journal Article
    Glas, J.; Duemcke, S.; Zacher, B.; Poron, D.; Gagneur, J.; Tresch, A.: Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model. Nucleic Acids Research (London) (2015)
  26. Journal Article
    Gonzalez-Rodriguez, V. E.; Lineiro, E.; Colby, T.; Harzen, A.; Garrido, C.; Manuel Cantoral, J.; Schmidt, J.; Javier Fernandez-Acero, F.: Proteomic profiling of Botrytis cinerea conidial germination. Archives of Microbiology 197 (2), pp. 117 - 133 (2015)
  27. Journal Article
    Gupta, R.; Wang, Y.; Agrawal, G. K.; Rakwal, R.; Jo, I. H.; Bang, K. H.; Kim, S. T.: Time to dig deep into the plant proteome: a hunt for low-abundance proteins. Frontiers in Plant Science 6 (2015)
  28. Journal Article
    Gupta, R.; Min, C. W.; Kim, S. W.; Wang, Y.; Agrawal, G. K.; Rakwal, R.; Kim, S. G.; Lee, B. W.; Ko, J. M.; Baek, I. Y. et al.; Bae, D. W.; Kim, S. T.: Comparative investigation of seed coats of brown-versus yellow-colored soybean seeds using an integrated proteomics and metabolomics approach. SI 15 (10), pp. 1706 - 1716 (2015)
  29. Journal Article
    Gupta, R.; Lee, S. E.; Agrawal, G. K.; Rakwal, R.; Park, S.; Wang, Y.; Kim, S. T.: Understanding the plant-pathogen interactions in the context of proteomics-generated apoplastic proteins inventory. Frontiers in Plant Science 6 (2015)
  30. Journal Article
    Gutjahr, C.; Gobbato, E.; Choi, J.; Riemann, M.; Johnston, M. G.; Summers, W.; Carbonnel, S.; Mansfield, C.; Yang, S.-Y.; Nadal, M. et al.; Acosta, I.; Takano, M.; Jiao, W.-B.; Schneeberger, K.; Kelly, K. A.; Paszkowski, U.: Rice perception of symbiotic arbuscular mycorrhizal fungi requires the karrikin receptor complex. Science Magazine 350 (6267), pp. 1521 - 1524 (2015)
  31. Journal Article
    Hacquard, S.; Garrido Oter, R.; González, A.; Spaepen, S.; Ackermann, G.; Lebeis, S.; McHardy, A. C.; Dangl, J. L.; Knight, R.; Ley, R. et al.; Schulze-Lefert, P.: Microbiota and Host Nutrition across Plant and Animal Kingdoms. Cell Host & Microbe 17 (5), pp. 603 - 613 (2015)
  32. Journal Article
    Hacquard, S.; Schadt, C. W.: Towards a holistic understanding of the beneficial interactions across the Populus microbiome. New Phytologist, Special Issue 205 (4), pp. 1424 - 1430 (2015)
  33. Journal Article
    Hagmann, J.; Becker, C.; Mueller, J.; Stegle, O.; Meyer, R. C.; Wang, G.; Schneeberger, K.; Fitz, J.; Altmann, T.; Bergelson, J. et al.; Borgwardt, K.; Weigel, D.: Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage. PLOS GENETICS 11 (1) (2015)
  34. Journal Article
    Halder, V.; Kombrink, E.: Facile high-throughput forward chemical genetic screening by in situ monitoring of glucuronidase-based reporter gene expression in Arabidopsis thaliana. Frontiers in Plant Science 6 (2015)
  35. Journal Article
    Hartl, M.; König, A.-C.; Finkemeier, I.: Identification of lysine-acetylated mitochondrial proteins and their acetylation sites. Methods in molecular biology (Clifton, N.J.) 1305, pp. 107 - 21 (2015)
  36. Journal Article
    Hofmann, A.; Ritz, U.; Rompe, J. -.; Tresch, A.; Rommens, P. M.: The effect of shock wave therapy on gene expression in human osteoblasts isolated from hypertrophic fracture non-unions. SHOCK WAVES 25 (1), pp. 91 - 102 (2015)
  37. Journal Article
    Horn, F.; Habekuss, A.; Stich, B.: Linkage mapping of Barley yellow dwarf virus resistance in connected populations of maize. BMC Plant Biology 15 (2015)
  38. Journal Article
    Huetten, M.; Geukes, M.; Misas-Villamil, J.; Van der Hoorn, R. A. L.; Grundler, F. M. W.; Siddique, S.: Activity profiling reveals changes in the diversity and activity of proteins in Arabidopsis roots in response to nematode infection. Plant Physiology and Biochemistry 97, pp. 36 - 43 (2015)
  39. Journal Article
    Hughes, P. W.; Simons, A. M.: Microsatellite evidence for obligate autogamy, but abundant genetic variation in the herbaceous monocarp Lobelia inflata (Campanulaceae). Journal of Evolutionary Biology 28 (11), pp. 2068 - 2077 (2015)
  40. Journal Article
    Hyun, Y.; Kim, J.; Cho, S. W.; Choi, Y.; Kim, J.-S.; Coupland, G.: Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles. PLANTA 241 (1), pp. 271 - 284 (2015)
  41. Journal Article
    Iglesias, F. M.; Bruera, N. A.; Dergan-Dylon, S.; Marino-Buslje, C.; Lorenzi, H.; Mateos, J. L.; Turck, F.; Coupland, G.; Cerdán, P. D.: The Arabidopsis DNA Polymerase δ Has a Role in the Deposition of Transcriptionally Active Epigenetic Marks, Development and Flowering. PLoS Genetics 11 (2) (2015)
  42. Journal Article
    Ilk, N.; Ding, J.; Ihnatowicz, A.; Koornneef, M.; Reymond, M.: Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2. New Phytologist 206 (1), pp. 422 - 435 (2015)
  43. Journal Article
    Ilyas, M.; Hoerger, A. C.; Bozkurt, T. O.; van den Burg, H. A.; Kaschani, F.; Kaiser, M.; Belhaj, K.; Smoker, M.; Joosten, M. H. A. J.; Kamoun, S. et al.; Van der Hoorn, R. A. L.: Functional Divergence of Two Secreted Immune Proteases of Tomato. Current Biology 25 (17), pp. 2300 - 2306 (2015)
  44. Journal Article
    Jang, S.; Choi, S.-C.; Li, H.-Y.; An, G.; Schmelzer, E.: Functional Characterization of Phalaenopsis aphrodite Flowering Genes PaFT1 and PaFD. PLoS One 10 (8) (2015)
  45. Journal Article
    Ji, H.; Wang, S.; Li, K.; Szakonyi, D.; Koncz, C.; Li, X.: PRL1 modulates root stem cell niche activity and meristem size through WOX5 and PLTs in Arabidopsis. The Plant Journal 81 (3), pp. 399 - 412 (2015)
  46. Journal Article
    Juyo, D.; Sarmiento, F.; Alvarez, M.; Brochero, H.; Gebhardt, C.; Mosquera, T.: Genetic Diversity and Population Structure in Diploid Potatoes of Solanum tuberosum Group Phureja. Crop Science 55 (2), pp. 760 - 769 (2015)
  47. Journal Article
    Kemen, A.; Agler, M.T.; Kemen, E.: Host-microbe and microbe-microbe interactions in the evolution of obligate plant parasitism. SI 206 (4), pp. 1207 - 1228 (2015)
  48. Journal Article
    Kim, Y. J.; Wang, Y.; Gupta, R.; Kim, S. W.; Min, C. W.; Kim, Y. C.; Park, K. H.; Agrawal, G. K.; Rakwal, R.; Choung, M.-G. et al.; Kang, K. Y.; Kim, S. T.: Protamine sulfate precipitation method depletes abundant plant seed-storage proteins: A case study on legume plants. SI 15 (10), pp. 1760 - 1764 (2015)
  49. Journal Article
    Kinoshita, A.; Seo, M.; Kamiya, Y.; Sawa, S.: Mystery in genetics: PUB4 gives a clue to the complex mechanism of CLV signaling pathway in the shoot apical meristem. Plant Signaling & Behavior 10 (6) (2015)
  50. Journal Article
    Koornneef, M.: Interview with Maarten Koornneef. Trends in Plant Science 20 (3), pp. 135 - 136 (2015)
 
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