MPIPZ Scientific Publications since 2002

Journal Article (106)

Journal Article
Andrés, F. L.; Romera Branchat, M.; Martinez-Gallegos, R.; Patel, V.; Schneeberger, K.; Jang, S.; Altmuller, J.; Nurnberg, P.; Coupland, G.: Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant physiology 169 (3), pp. 2187 - 99 (2015)
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Bai, Y.; Mueller, D. B.; Srinivas, G.; Garrido Oter, R.; Potthoff, E.; Rott, M.; Dombrowski, N.; Muench, P. C.; Spaepen, S.; Remus-Emsermann, M. et al.; Huettel, B.; McHardy, A. C.; Vorholt, J. A.; Schulze-Lefert, P.: Functional overlap of the Arabidopsis leaf and root microbiota. Nature 528 (7582), pp. 364 - 369 (2015)
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Baranauske, S.; Mickute, M.; Plotnikova, A.; Finke, A.; Venclovas, C.; Klimasauskas, S.; Vilkaitis, G.: Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins. Nucleic Acids Research (London) 43 (5), pp. 2802 - 2812 (2015)
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Barbier de Reuille, P.; Routier-Kierzkowska, A.-L.; Kierzkowski, D.; Bassel, G. W.; Schuepbach, T.; Tauriello, G.; Bajpai, N.; Strauss, S.; Weber, A.; Kiss, A. et al.; Burian, A.; Hofhuis, H.; Sapala, A.; Lipowczan, M.; Heimlicher, M. B.; Robinson, S.; Bayer, E. M.; Basler, K.; Koumoutsakos, P.; Roeder, A. H. K.; Aegerter-Wilmsen, T.; Nakayama, N.; Tsiantis, M.; Hay, A.; Kwiatkowska, D.; Xenarios, I.; Kuhlemeier, C.; Smith, R. S.: MorphoGraphX: A platform for quantifying morphogenesis in 4D. ELIFE 4, e05864 (2015)
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Barboza Barquero, L.; Nagel, K.A.; Jansen , M.; Klasen, J. R.; Kastenholz, B.; Braun, S.; Bleise, B.; Brehm, T.; Koornneef, M.; Fiorani, F.: Phenotype of Arabidopsis thaliana semi-dwarfs with deep roots and high growth rates under water limiting conditions is independent from the GA5 loss-of-function alleles. Annals of Botany (116), pp. 321 - 331 (2015)
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Benke, A.; Urbany, C.; Stich, B.: Genome-wide association mapping of iron homeostasis in the maize association population. BMC GENETICS 16, 1 (2015)
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Bours, R.; Kohlen, W.; Bouwmeester, H. J.; van der Krol, A.: Thermoperiodic Control of Hypocotyl Elongation Depends on Auxin-Induced Ethylene Signaling That Controls Downstream PHYTOCHROME INTERACTING FACTOR3 Activity. Plant Physiology 167 (2), pp. 517 - 530 (2015)
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Bratzel, F.; Turck, F.: Molecular memories in the regulation of seasonal flowering: from competence to cessation. Genome Biology 16 (16), 192 (2015)
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Brockington, S. F.; Moyroud, E.; Sayou, C.; Monniaux, M.; Nanao, M. H.; Thevenon, E.; Chahtane, H.; Warthmann, N.; Melkonian, M.; Zhang, Y. et al.; Wong, G. K.-S.; Weigel, D.; Dumas, R.; Parcy, F.: EVOLUTION Response to Comment on "A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity". SCIENCE 347 (347), p. 621 - 621 (2015)
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Bühler, J.; Rishmawi, L.; Pflugfelder, D.; Huber, G.; Scharr, H.; Hülskamp, M.; Koornneef, M.; Schurr, U.; Jahnke, S.: phenoVein - A tool for leaf vein segmentation and analysis. Plant Physiology 169 (4), pp. 2359 - 2370 (2015)
Journal Article
Bulgarelli, D.; Garrido Oter, R.; Muench, P. C.; Weiman, A.; Droege, J.; Pan, Y.; McHardy, A. C.; Schulze-Lefert, P.: Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley. Cell Host & Microbe 17 (3), pp. 392 - 403 (2015)
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Cai, N.; Bigdeli, T. B.; Kretzschmar, W.; Li, Y.; Liang, J.; Song, L.; Hu, J.; Li, Q.; Jin, W.; Hu, Z. et al.; Wang, G.; Wang, L.; Qian, P.; Liu, Y.; Jiang, T.; Lu, Y.; Zhang, X.; Yin, Y.; Li, Y.; Xu, X.; Gao, J.; Reimers, M.; Webb, T.; Riley, B.; Bacanu, S.; Peterson, R. E.; Chen, Y.; Zhong, H.; Liu, Z.; Wang, G.; Sun, J.; Sang, H.; Jiang, G.; Zhou, X.; Li, Y.; Li, Y.; Zhang, W.; Wang, X.; Fang, X.; Pan, R.; Miao, G.; Zhang, Q.; Hu, J.; Yu, F.; Du, B.; Sang, W.; Li, K.; Chen, G.; Cai, M.; Yang, L.; Yang, D.; Ha, B.; Hong, X.; Deng, H.; Li, G.; Li, K.; Song, Y.; Gao, S.; Zhang, J.; Gan, Z.; Meng, H.; Pan, J.; Gao, C.; Zhang, K.; Sun, N.; Li, Y.; Niu, Q.; Zhang, Y.; Liu, T.; Hu, C.; Zhang, Z.; Lv, L.; Dong, J.; Wang, X.; Tao, M.; Wang, X.; Xia, J.; Rong, H.; He, Q.; Liu, T.; Huang, G.; Mei, Q.; Shen, Z.; Liu, Y.; Shen, J.; Tian, T.; Liu, X.; Wu, W.; Gu, D.; Fu, G.; Shi, J.; Chen, Y.; Gan, X.; Liu, L.; Wang, L.; Yang, F.; Cong, E.; Marchini, J.; Yang, H.; Wang, J.; Shi, S.; Mott, R.; Xu, Q.; Wang, J.; Kendler, K. S.; Flint, J.: Sparse whole-genome sequencing identifies two loci for major depressive disorder. Nature 523 (7562), pp. 588 - + (2015)
Journal Article
Cai, N.; Chang, S.; Li, Y.; Li, Q.; Hu, J.; Liang, J.; Song, L.; Kretzschmar, W.; Gan, X.; Nicod, J. et al.; Rivera, M.; Deng, H.; Du, B.; Li, K.; Sang, W.; Gao, J.; Gao, S.; Ha, B.; Ho, H.-Y.; Hu, C.; Hu, J.; Hu, Z.; Huang, G.; Jiang, G.; Jiang, T.; Jin, W.; Li, G.; Li, K.; Li, Y.; Li, Y.; Li, Y.; Lin, Y.-T.; Liu, L.; Liu, T.; Liu, Y.; Liu, Y.; Lu, Y.; Lv, L.; Meng, H.; Qian, P.; Sang, H.; Shen, J.; Shi, J.; Sun, J.; Tao, M.; Wang, G.; Wang, G.; Wang, J.; Wang, L.; Wang, X.; Wang, X.; Yang, H.; Yang, L.; Yin, Y.; Zhang, J.; Zhang, K.; Sun, N.; Zhang, W.; Zhang, X.; Zhang, Z.; Zhong, H.; Breen, G.; Wang, J.; Marchini, J.; Chen, Y.; Xu, Q.; Xu, X.; Mott, R.; Huang, G.-J.; Kendler, K.; Flintl, J.: Molecular Signatures of Major Depression. CURRENT BIOLOGY 25 (9), pp. 1146 - 1156 (2015)
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Cao, H. X.; Schmutzer, T.; Scholz, U.; Pecinka, A.; Schubert, I.; Vu, G. T. H.: Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species. Frontiers in Microbiology 6, 526 (2015)
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Cartolano, M.; Pieper, B.; Lempe, J.; Tattersall, A.; Huijser, P.; Tresch, A.; Darrah, P. R.; Hay, A.; Tsiantis, M.: Heterochrony underpins natural variation in Cardamine hirsuta leaf form. Proceedings of the National Academy of Sciences of the United States of America 112 (33), pp. 10539 - 10544 (2015)
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Cui, H.; Tsuda, K.; Parker, J. E.: Effector-Triggered Immunity: From Pathogen Perception to Robust Defense. ANNUAL REVIEW OF PLANT BIOLOGY, VOL 66, pp. 487 - 511 (2015)
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de Montaigu, A.; Giakountis, A.; Rubin, M.; Toth, R.; Cremer, F.; Sokolova, V.; Porri, A.; Reymond, M.; Weinig, C.; Coupland, G.: Natural diversity in daily rhythms of gene expression contributes to phenotypic variation. Proceedings of the National Academy of Sciences of the United States of America 112 (3), pp. 905 - 910 (2015)
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Delaplace, P.; Delory, B. M.; Baudson, C.; de Cazenave, M. M.-S.; Spaepen, S.; Varin, S.; Brostaux, Y.; du Jardin, P.: Influence of rhizobacterial volatiles on the root system architecture and the production and allocation of biomass in the model grass Brachypodium distachyon (L.) P. Beauv. BMC Plant Biology 15, 195 (2015)
Journal Article
Deng, W.; Clausen, J.; Boden, S.; Oliver, S. N.; Casao, C. M.; Ford, B.; Anderssen, R. S.; Trevaskis, B.: Dawn and Dusk Set States of the Circadian Oscillator in Sprouting Barley (Hordeum vulgare) Seedlings. PLoS One 10 (6), e0129781 (2015)
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Digel, B.; Pankin, A.; von Korff, M.: Global Transcriptome Profiling of Developing Leaf and Shoot Apices Reveals Distinct Genetic and Environmental Control of Floral Transition and Inflorescence Development in Barley. The Plant cell 27 (9), pp. 2318 - 34 (2015)
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El-Soda, M.; Kruijer, W.; Malosetti, M.; Koornneef, M.; Aarts, M. G. M.: Quantitative trait loci and candidate genes underlying genotype by environment interaction in the response of Arabidopsis thaliana to drought. Plant, Cell and Environment 38 (3), pp. 585 - 599 (2015)
Journal Article
Fischer, M.; Kuckenberg, M.; Kastilan, R.; Muth, J.; Gebhardt, C.: Novel in vitro inhibitory functions of potato tuber proteinaceous inhibitors. Molecular Genetics and Genomics 290 (1), pp. 387 - 398 (2015)
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Fornara, F.; de Montaigu, A.; Sánchez Villarreal, A.; Takahashi, Y.; Ver Loren van Themaat, E.; Huettel, B.; Davis, S. J.; Coupland, G.: The GI-CDF module of Arabidopsis affects freezing tolerance and growth as well as flowering. The Plant Journal 81 (5), pp. 695 - 706 (2015)
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Frey, F. P.; Urbany, C.; Huettel, B.; Reinhardt, R.; Stich, B.: Genome-wide expression profiling and phenotypic evaluation of European maize inbreds at seedling stage in response to heat stress. BMC Genomics 16, 123 (2015)
Journal Article
Gonzalez-Rodriguez, V. E.; Lineiro, E.; Colby, T.; Harzen, A.; Garrido, C.; Manuel Cantoral, J.; Schmidt, J.; Javier Fernandez-Acero, F.: Proteomic profiling of Botrytis cinerea conidial germination. Archives of Microbiology 197 (2), pp. 117 - 133 (2015)
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Gupta, R.; Lee, S. E.; Agrawal, G. K.; Rakwal, R.; Park, S.; Wang, Y.; Kim, S. T.: Understanding the plant-pathogen interactions in the context of proteomics-generated apoplastic proteins inventory. Frontiers in Plant Science 6, 352 (2015)
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Gupta, R.; Min, C. W.; Kim, S. W.; Wang, Y.; Agrawal, G. K.; Rakwal, R.; Kim, S. G.; Lee, B. W.; Ko, J. M.; Baek, I. Y. et al.; Bae, D. W.; Kim, S. T.: Comparative investigation of seed coats of brown-versus yellow-colored soybean seeds using an integrated proteomics and metabolomics approach. SI 15 (10), pp. 1706 - 1716 (2015)
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Gupta, R.; Wang, Y.; Agrawal, G. K.; Rakwal, R.; Jo, I. H.; Bang, K. H.; Kim, S. T.: Time to dig deep into the plant proteome: a hunt for low-abundance proteins. Frontiers in Plant Science 6, 00022 (2015)
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Gutjahr, C.; Gobbato, E.; Choi, J.; Riemann, M.; Johnston, M. G.; Summers, W.; Carbonnel, S.; Mansfield, C.; Yang, S.-Y.; Nadal, M. et al.; Acosta, I.; Takano, M.; Jiao, W.-B.; Schneeberger, K.; Kelly, K. A.; Paszkowski, U.: Rice perception of symbiotic arbuscular mycorrhizal fungi requires the karrikin receptor complex. Science Magazine 350 (6267), pp. 1521 - 1524 (2015)
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Hacquard, S.; Garrido Oter, R.; González, A.; Spaepen, S.; Ackermann, G.; Lebeis, S.; McHardy, A. C.; Dangl, J. L.; Knight, R.; Ley, R. et al.; Schulze-Lefert, P.: Microbiota and Host Nutrition across Plant and Animal Kingdoms. Cell Host & Microbe 17 (5), pp. 603 - 613 (2015)
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Hacquard, S.; Schadt, C. W.: Towards a holistic understanding of the beneficial interactions across the Populus microbiome. New Phytologist, Special Issue 205 (4), pp. 1424 - 1430 (2015)
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Hagmann, J.; Becker, C.; Mueller, J.; Stegle, O.; Meyer, R. C.; Wang, G.; Schneeberger, K.; Fitz, J.; Altmann, T.; Bergelson, J. et al.; Borgwardt, K.; Weigel, D.: Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage. PLOS GENETICS 11 (1), e1004920 (2015)
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Halder, V.; Kombrink, E.: Facile high-throughput forward chemical genetic screening by in situ monitoring of glucuronidase-based reporter gene expression in Arabidopsis thaliana. Frontiers in Plant Science 6, 13 (2015)
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Hartl, M.; König, A.-C.; Finkemeier, I.: Identification of lysine-acetylated mitochondrial proteins and their acetylation sites. Methods in molecular biology (Clifton, N.J.) 1305, pp. 107 - 21 (2015)
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Hofmann, A.; Ritz, U.; Rompe, J. -.; Tresch, A.; Rommens, P. M.: The effect of shock wave therapy on gene expression in human osteoblasts isolated from hypertrophic fracture non-unions. SHOCK WAVES 25 (1), pp. 91 - 102 (2015)
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Horn, F.; Habekuss, A.; Stich, B.: Linkage mapping of Barley yellow dwarf virus resistance in connected populations of maize. BMC Plant Biology 15, 29 (2015)
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Huetten, M.; Geukes, M.; Misas-Villamil, J.; Van der Hoorn, R. A. L.; Grundler, F. M. W.; Siddique, S.: Activity profiling reveals changes in the diversity and activity of proteins in Arabidopsis roots in response to nematode infection. Plant Physiology and Biochemistry 97, pp. 36 - 43 (2015)
Journal Article
Hughes, P. W.; Simons, A. M.: Microsatellite evidence for obligate autogamy, but abundant genetic variation in the herbaceous monocarp Lobelia inflata (Campanulaceae). Journal of Evolutionary Biology 28 (11), pp. 2068 - 2077 (2015)
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Hyun, Y.; Kim, J.; Cho, S. W.; Choi, Y.; Kim, J.-S.; Coupland, G.: Site-directed mutagenesis in Arabidopsis thaliana using dividing tissue-targeted RGEN of the CRISPR/Cas system to generate heritable null alleles. PLANTA 241 (1), pp. 271 - 284 (2015)
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Iglesias, F. M.; Bruera, N. A.; Dergan-Dylon, S.; Marino-Buslje, C.; Lorenzi, H.; Mateos, J. L.; Turck, F.; Coupland, G.; Cerdán, P. D.: The Arabidopsis DNA Polymerase δ Has a Role in the Deposition of Transcriptionally Active Epigenetic Marks, Development and Flowering. PLoS Genetics 11 (2), e1004975 (2015)
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Ilk, N.; Ding, J.; Ihnatowicz, A.; Koornneef, M.; Reymond, M.: Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2. New Phytologist 206 (1), pp. 422 - 435 (2015)
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Ilyas, M.; Hoerger, A. C.; Bozkurt, T. O.; van den Burg, H. A.; Kaschani, F.; Kaiser, M.; Belhaj, K.; Smoker, M.; Joosten, M. H. A. J.; Kamoun, S. et al.; Van der Hoorn, R. A. L.: Functional Divergence of Two Secreted Immune Proteases of Tomato. Current Biology 25 (17), pp. 2300 - 2306 (2015)
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Jang, S.; Choi, S.-C.; Li, H.-Y.; An, G.; Schmelzer, E.: Functional Characterization of Phalaenopsis aphrodite Flowering Genes PaFT1 and PaFD. PLoS One 10 (8), e0134987 (2015)
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Ji, H.; Wang, S.; Li, K.; Szakonyi, D.; Koncz, C.; Li, X.: PRL1 modulates root stem cell niche activity and meristem size through WOX5 and PLTs in Arabidopsis. The Plant Journal 81 (3), pp. 399 - 412 (2015)
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Juyo, D.; Sarmiento, F.; Alvarez, M.; Brochero, H.; Gebhardt, C.; Mosquera, T.: Genetic Diversity and Population Structure in Diploid Potatoes of Solanum tuberosum Group Phureja. Crop Science 55 (2), pp. 760 - 769 (2015)
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Kemen, A.; Agler, M.T.; Kemen, E.: Host-microbe and microbe-microbe interactions in the evolution of obligate plant parasitism. SI 206 (4), pp. 1207 - 1228 (2015)
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Kim, Y. J.; Wang, Y.; Gupta, R.; Kim, S. W.; Min, C. W.; Kim, Y. C.; Park, K. H.; Agrawal, G. K.; Rakwal, R.; Choung, M.-G. et al.; Kang, K. Y.; Kim, S. T.: Protamine sulfate precipitation method depletes abundant plant seed-storage proteins: A case study on legume plants. SI 15 (10), pp. 1760 - 1764 (2015)
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Kinoshita, A.; Seo, M.; Kamiya, Y.; Sawa, S.: Mystery in genetics: PUB4 gives a clue to the complex mechanism of CLV signaling pathway in the shoot apical meristem. Plant Signaling & Behavior 10 (6), e1028707 (2015)
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Koornneef, M.: Interview with Maarten Koornneef. Trends in Plant Science 20 (3), pp. 135 - 136 (2015)
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Körber, N.; Bus, A.; Li, J. Q.; Higgins, J.; Bancroft, I.; Higgins, E.E.; Parkin, I. A. P.; Salazar-Colqui, B.; Snowdon, R. J.; Stich, B.: Seedling development traits in Brassica napus examined by gene expression analysis and association mapping. BMC Plant Biology 15, UNSP 136 (2015)
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