Scientific Publications since 2002

Journal Article

Amanda, D.; Frey, F. P.; Neumann, U.; Przybyl, M.; Šimura, J.; Zhang, Y.; Chen, Z.; Gallavotti, A.; Fernie, A. R.; Ljung, K. et al.; Acosta, I. F.: Auxin boosts energy generation pathways to fuel pollen maturation in barley. Current Biology (2022)

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Bourceret, A.; Guan, R.; Dorau, K.; Mansfeldt, T.; Omidbakhshfard, A.; Medeiros, D. B.; Fernie, A. R.; Hofmann, J.; Sonnewald, U.; Mayer, J. et al.; Gerlach, N.; The RECONSTRUCT consortium; Bucher, M.; Garrido Oter, R.; Spaepen, S.; Schulze-Lefert, P.: Maize Field Study Reveals Covaried Microbiota and Metabolic Changes in Roots over Plant Growth. mBio, e02584-21 (2022)

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Durán, P.; Flores-Uribe, J.; Wippel, K.; Zhang, P.; Guan, R.; Guan, R.; Melkonian, B.; Melkonian, M.; Garrido Oter, R.; Zhang, P.: Shared features and reciprocal complementation of the Chlamydomonas and Arabidopsis microbiota. Nature Communications 13 (406) (2022)

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Fulgione, A.; Neto, C.; Elfarargi, A. F.; Tergemina, E.; Ansari, S.; Göktay, M.; Dinis, H.; Döring, N.; Flood, P. J.; Rodriguez-Pacheco, S. et al.; Walden, N.; Koch, M.A.; Roux, F.; Hermisson, J.; Hancock, A. M.: Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages. Nature Communications 13 (1), 1461 (2022)

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Ma, K.-W.; Ordon, J.; Schulze-Lefert, P.: Gnotobiotic Plant Systems for Reconstitution and Functional Studies of the Root Microbiota. Current Protocols 2, e362 (2022)

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Saur, , I. M. L.; Lawson, A. W.; Schulze-Lefert, P.: Buy one, get two. Nature Plants 8, pp. 100 - 101 (2022)

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Schmitz, R. J.; Marand, A. P.; Zhang, X.; Mosher, R. A.; Turck, F.; Chen, X.; Axtell, M. J.; Zhong, X.; Brady, S. M.; Megraw, M. et al.; Meyers, B. C.: Quality control and evaluation of plant epigenomics data. Plant Cell Physiology 34 (1), pp. 503 - 513 (2022)

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Sun, H.-Q.; Jiao, W.-B.; Krause, K.; Campoy, J. A.; Goel, M.; Folz-Donahue, K.; Kukat, C.; Huettel, B.; Schneeberger, K.: Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar. Nature Genetics 54, pp. 342 - 348 (2022)

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Tzortzakis, N.; Pitsikoulaki, G.; Stamatakis, A.: Ammonium to Total Nitrogen Ratio Interactive Effects with Salinity Application on Solanum lycopersicum Growth, Physiology, and Fruit Storage in a Closed Hydroponic System. Agronomy 12 (2), 386 (2022)

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van Rengs, W. M. J.; Schmidt, M. H.-W.; Effgen, S.; Le, D. B.; Wang, Y.; Zaidan, M. W. A.; Huettel, B.; Schouten, H. J.; Usadel, B.; Underwood, C. J.: A chromosome scale tomato genome built from complementary PacBio and Nanopore sequences alone reveals extensive linkage drag during breeding. The Plant Journal (2022)

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Aecyo, P.; Marques, A.; Huettel, B.; Silva, A.; Esposito, T.; Ribeiro, E.; Leal, I.R.; Gagnon, E.; Souza, G.; Pedrosa-Harand, A.: Plastome evolution in the Caesalpinia group (Leguminosae) and its application in phylogenomics and populations genetics. Planta 254 (2), 27 (2021)

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Andersen, T. G.; Molina, D.; Kilian, J.; Franke, R. B.; Ragni, L.; Geldner, N.: Tissue-Autonomous Phenylpropanoid Production Is Essential for Establishment of Root Barriers. Current Biology 31 (5), pp. 965 - 977.e (2021)

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Andrej, B.; Lenka, B.; Buchler, L.; Stolze, S.; Sobh, A.; Kraus, M.; Nakagami, H.; Driessen, C.: Genome-wide CRISPR/Cas9 screening identifies proteasome-related specific vulnerabilities as potential treatment options of proteasome inhibitor-resistant multiple myeloma. Clinical Lymphoma Myeloma and Leukemia 21, pp. S88 - S89 (2021)

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Bauer, S.; Yu, D.; Lawson, A. W.; Saur, I. M. L.; Frantzeskakis, L.; Kracher, B.; Logemann, E.; Chai, J.; Maekawa, T.; Schulze-Lefert, P.: The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold. PLoS Pathogens 17 (2), e1009223 (2021)

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Bhatia, N.; Runions, A.; Tsiantis, M.: Leaf Shape Diversity: From Genetic Modules to Computational Models. Annual Review of Plant Biology 72, pp. 325 - 356 (2021)

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Bi, G.; Su, M.; Li, N.; Liang, Y.; Dang, S.; Xu, J.; Hu, M.; Wang, J.; Zou, M.; Deng, Y. et al.; Li, Q.; Huang, S.; Li, J.; Chai, J.; He, K.; Chen, Y. h.; Zhou, J.-M.: The ZAR1 resistosome is a calcium-permeable channel triggering plant immune signaling. Cell 184 (13), pp. 3528 - 3541.e12 (2021)

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Bruessow, F.; Bautor, J.; Hoffmann, G.; Yildiz, I.; Zeier, J.; Parker, J. E.: Natural variation in temperature-modulated immunity uncovers transcription factor bHLH059 as a thermoresponsive regulator in Arabidopsis thaliana. PLoS Genetics 17 (1), e1009290 (2021)

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Burns, R.; Mandakova, T.; Gunis, J.; Soto-Jiménez, L. M.; Liu, C.; Lysak, M. A.; Novikova, P. Y.; Nordborg, M.: Gradual evolution of allopolyploidy in Arabidopsis suecica. Nature Ecology & Evolution (2021)

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Capilla-Perez, L.; Durand, S.; Hurel, A.; Lian, Q.; Chambon, A.; Taochy, C.; Solier, V.; Grelon, M.; Mercier, R.: The synaptonemal complex imposes crossover interference and heterochiasmy in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 118 (12), e2023613118 (2021)

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Chaudhry, V.; Runge, P.; Sengupta, P.; Doehlemann, G.; Parker, J. E.; Kemen, E.: Shaping the leaf microbiota: plant-microbe-microbe interactions. Special Issue 72 (1), pp. 36 - 56 (2021)

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Copeland, C.: Same but different: examining the molecular mechanisms of intercellular rhizobial infection. Plant Physiology 185 (3), pp. 754 - 756 (2021)

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Costa, L.; Marques, A.; Buddenhagen, C.; Thomas, W. W.; Huettel, B.; Schubert, V.; Dodsworth, S.; Houben, A.; Souza, G.; Pedrosa-Harand, A.: Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA. Annals of Botany, mcab063 (2021)

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da Silveira Falavigna, V.; Severing, E.; Lai, X.; Estevan, J.; Farrera, I.; Hugouvieux, V.; Revers, L. F.; Zubieta, C.; Coupland, G.; Costes, E. et al.; Andrés, F.: Unraveling the role of MADS transcription factor complexes in apple tree dormancy. New Phytologist 232 (5), pp. 2071 - 2088 (2021)

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Dongus, J. A.; Parker, J. E.: At the nexus of intracellular and surface receptor immunity. Current Opinion in Plant Biology 32, 102039 (2021)

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Durán, P.; Reinstädler, A.; Rajakrut, A.; Hashimoto, M.; Garrido Oter, R.; Schulze-Lefert, P.; Panstruga, R.: A fungal powdery mildew pathogen induces extensive local and marginal systemic changes in the Arabidopsis thaliana microbiota. Environmental Microbiology 23 (10), pp. 6292 - 6308 (2021)

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Eitzen, K.; Sengupta, P.; Kroll, S.; Kemen, E.; Doehlemann, G.: A fungal member of the Arabidopsis thaliana phyllosphere antagonizes Albugo laibachii via a GH25 lysozyme. eLife 10, e65306 (2021)

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Emonet, A.; Zhou, F.; Vacheron, J.; Heiman, C. M.; Tendon, V. D.; Ma, K.-W.; Schulze-Lefert, P.; Keel, C.; Geldner, N.: Spatially Restricted Immune Responses Are Required for Maintaining Root Meristematic Activity upon Detection of Bacteria. Current Biology 31 (5) (2021)

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Frerigmann, H.; Hoecker, U.; Gigolashvili, T.: New Insights on the Regulation of Glucosinolate Biosynthesis via COP1 and DELLA Proteins in Arabidopsis Thaliana. Frontiers in Plant Science 12, 680255 (2021)

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Goektay, M.; Fulgione, A.; Hancock, A.: A New Catalog of Structural Variants in 1,301 A. thaliana Lines from Africa, Eurasia, and North America Reveals a Signature of Balancing Selection at Defense Response Genes. Molecular Biology and Evolution 38 (4), pp. 1498 - 1511 (2021)

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Gol, L.; Haraldsson, E. B.; von Korff, M.: Ppd-H1 integrates drought stress signals to control spike development and flowering time in barley. Special Issue 72 (1), pp. 122 - 136 (2021)

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Graf, J. S.; Schorn, S.; Kitzinger, K.; Ahmerkamp, S.; Woehle, C.; Huettel, B.; Schubert, C. J.; Kuypers, M. M. M.; Milucka, J.: Anaerobic endosymbiont generates energy for ciliate host by denitrification. NATURE 591 (7850), pp. 445 - 450 (2021)

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Hofstatter, P. G.; Thangavel, G.; Castellani, M.; Marques, A.: Meiosis Progression and Recombination in Holocentric Plants: What Is Known? Frontiers in Plant Science 12, 617 (2021)

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Holbein, J.; Shen, D.; Andersen, T. G.: The endodermal passage cell - just another brick in the wall? New Phytologist 230 (4), pp. 1321 - 1328 (2021)

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Hou, S.; Thiergart, T.; Vannier, N.; Mesny, F.; Ziegler, J.; Pickel, B.; Hacquard, S.: A microbiota-root-shoot circuit favours Arabidopsis growth over defence under suboptimal light. Nature Plants (2021)

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Hou, S.; Wolinska, K. W.; Hacquard, S.: Microbiota-root-shoot-environment axis and stress tolerance in plants. Current Opinion in Plant Biology 62, 102028 (2021)

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Jiao, W.-B.; Patel, V.; Klasen, J. R.; Liu, F.; Pecinkova, P.; Ferrand, M.; Gy, I.; Camilleri, C.; Effgen, S.; Koornneef, M. et al.; Pecinka, A.; Loudet, O.; Schneeberger, K.: The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thaliana. Molecular Biology and Evolution 38 (4), pp. 1225 - 1240 (2021)

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Joshi, M.; Kapopoulou, A.; Laurent, S.: Impact of Genetic Variation in Gene Regulatory Sequences: A Population Genomics Perspective. Frontiers in Genetics 12, 660899 (2021)

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Kawaharada, Y.; Sandal, N.; Gupta, V.; Jin, H.; Kawaharada, M.; Taniuchi, M.; Ruman, H.; Nadzieja, M.; Andersen, K.r. R.; Schneeberger, K. et al.; Stougaard, J.; Andersen, S. U.: Natural variation identifies a Pxy gene controlling vascular organisation and formation of nodules and lateral roots in Lotus japonicus. New Phytologist (2021)

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Khouider, S.; Borges, F.; LeBlanc, C.; Ungru, A.; Schnittger, A.; Martienssen, R.; Colot, V.; Bouyer, D.: Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function. Nature Communications 12 (1), 410 (2021)

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Koornneef, M.: A Central Role for Genetics in Plant Biology. Annual Review of Plant Biology 72, pp. 1 - 16 (2021)

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Kremer, J. M.; Sohrabi, R.; Paasch, B. C.; Rhodes, D.; Thireault, C.; Schulze-Lefert, P.; Tiedje, J. M.; He, S. Y.: Peat-based gnotobiotic plant growth systems for Arabidopsis microbiome research. Nature Protocols 16, pp. 2450 - 2470 (2021)

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Loo, E.; Tajima, Y.; Yamada, K.; Kido, S.; Hirase, T.; Ariga, H.; Fujiwara, T.; Tanaka, K.; Taji, T.; Somssich, I. et al.; Parker, J. E.; Saijo, Y.: Recognition of microbe/damage-associated molecular patterns by leucine-rich repeat pattern recognition receptor kinases confers salt tolerance in plants. Molecular Plant-Microbe Interactions (2021)

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Ma, K.-W.; Niu, Y.; Jia, Y.; Ordon, J.; Copeland, C.; Emonet, A.; Geldner, N.; Guan, R.; Stolze, S. C.; Nakagami, H. et al.; Garrido-Oter, R.; Schulze-Lefert, P.: Coordination of microbe–host homeostasis by crosstalk with plant innate immunity. Nature Plants (2021)

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Madrid-Herrero, E.; Severing, E.; De Ansorena, E.; Kiefer, C.; Brand, L.; Martinez-Gallegos, R.; Woetzel, S.; Kemi, U.; Jiao, W.-B.; Schneeberger, K. et al.; Coupland, G.: Transposition and duplication of MADS-domain transcription factor genes in annual and perennial Arabis species modulates flowering. Proceedings of the National Academy of Sciences of the United States of America 118 (39), e2109204118 (2021)

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Mahdi, L.; Miyauchi, S.; Uhlmann, C.; Garrido-Oter, R.; Langen, G.; Wawra, S.; Niu, Y.; Guan, R.; Guan, R.; Robertson-Albertyn, S. et al.; Bulgarelli, D.; Parker, J. E.; Zuccaro, A.: The fungal root endophyte Serendipita vermifera displays inter-kingdom synergistic beneficial effects with the microbiota in Arabidopsis thaliana and barley. The ISME Journal (2021)

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Mataigne, V.; Vannier, N.; Vandenkoornhuyse, P.; Hacquard, S.: Microbial Systems Ecology to Understand Cross-Feeding in Microbiomes. Frontiers in Microbiology 12 (2021)

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Mayer, T.; Mari, A.; Almario, J.; Murillo-Roos, M.; Abdullah, H. S. M.; Dombrowski, N.; Hacquard, S.; Kemen, E. M.; Agler, M. T.: Obtaining deeper insights into microbiome diversity using a simple method to block host and nontargets in amplicon sequencing. Molecular Ecology Resources 21 (6), pp. 1952 - 1965 (2021)

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Mesny, F.; Miyauchi, S.; Thiergart, T.; Pickel, B.; Atanasova, L.; Karlsson, M.; Huettel, B.; Barry, K.W.; Haridas, S.; Chen, C. et al.; Bauer, D.; Andreopoulos, W.; Pangilinan, J.; LaButti, K.; Riley, R.; Lipzen, A.; Clum, A.; Drula, E.; Henrissat, B.; Kohler, A.; Grigoriev, I.V.; Martin, F.M.; Hacquard, S.: Genetic determinants of endophytism in the Arabidopsis root mycobiome. Nature Communications 12, 7227 (2021)

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Monroe, J. G.; McKay, J. K.; Weigel, D.; Flood, P. J.: The population genomics of adaptive loss of function. Heredity 126, pp. 383 - 395 (2021)

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