Scientific Publications since 2002

Journal Article

Albert, V. A.; Ávila Robledillo, L.; Fleck, S. J.; Guo, Y.; Kanamori, S.; Kirshner, J.; Marques, A.; Fukushima, K.: Complexity and innovation in carnivorous plant genomes. Trends in Genetics (2026)

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Bibi, A. C.; Ioannidis, P.; Spilianakis, C.; Vasilarou, M.; Bazakos, C.; Pavlidis, P.; Kalantidis, K.: High-Quality Genome Assembly and Annotation of Ceratonia siliqua Provide Insights Into the Secondary Loss of Symbiotic Nitrogen Fixation. Physiologia Plantarum 178 (1), e70803 (2026)

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Brand, J.N.; Patil, A.B.; Pandolfini, L.; Zadesenets, K.; Rubtsov, N.; Robledillo, L. A.; Zhang, M.; Marques, A.; Rink, J.C.: Stepwise emergence of recombination suppression precedes fissiparous asexuality in the planarian Schmidtea mediterranea. Nature Communications 17, 5588 (2026)

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Burns, R.; Glushkevich, A.; Kulkarni, A.; Kolesnikova, U. K.; Kolar, F.; Scott, A. D.; Novikova, P. Y.: Diploid origins and early genome stabilization in the allotetraploid Arabidopsis suecica. New Phytologist 249 (1), pp. 524 - 538 (2026)

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Cammarata, J.; Strauß, S.; Lane, B.; Kelly-Bellow, R.; Mancini, L.; Vernoux, T.; Coudert, Y.; Roeder, A. H. K.; Smith, R. S.: Spiral phyllotaxis in the moss Physcomitrium patens emerges from simple division rules of the apical cell. Current Biology 36 (5), pp. 1180 - 1189 (2026)

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Capparotto, A.; Chesneau, G.; Tondello, A.; Orellana, E.; Stevanato, P.; Bonato, T.; Squartini, A.; Hacquard, S.; Giovannetti, M.: Plant phenotypic differentiation outweighs genetic variation in shaping the lettuce leaf microbiota. Environmental Microbiome 21 (1), 35 (2026)

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Cerise, M.; Casanova Ferrer, P.; Coupland, G.: Plasticity of the Arabidopsis shoot apical meristem during floral transition. Current Opinion in Plant Biology 91, 102878 (2026)

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Coupland, G.: Floral induction in response to environmental cues: extending a century of progress. Planta 263 (6), 151 (2026)

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Dent, C. I.; Baus, L. C.; Tusso, S.; Dehmer, K. J.; Hutten, R. C. B.; van Eck, H. J.; Schneeberger, K.: Tracing modern breeding introgressions in European potato. Theoretical and Applied Genetics 139 (3), 73 (2026)

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Dong, X.; Jiao, W.-B.; Goldkuhle, L.; Rabanal, F.; Amar, S.; Parker, M. T.; Campoy, J. A.; Tao, Y.; Huettel, B.; Ton, J. et al.; Smith, L. M.; Puchta, H.; Weigel, D.; Schneeberger, K.: The mutational dynamics of the Arabidopsis centromeres. Nature (2026)

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Elfarargi, A. F.; Gilbault, E.; Doering, N.; Dinis, H.; Weber, A. P. M.; Loudet, O.; Hancock, A. M.: Dissecting the genetic basis of drought escape across multiple traits in colonizing Arabidopsis thaliana lineages. New Phytologist 251 (1), pp. 537 - 554 (2026)

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Elkatmis, B.; Tuerksoy, G. M.; Rodriguez, E.; Rahmoune, B.; Koprivova, A.; Kopriva, S.: Sulfur as a central integrator of plant-microbe interactions: from nutrient cycling to immune signalling and microbiome assembly. Journal of Experimental Botany, erag186 (2026)

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Eng, R. C.; Emonet, A.; Neumann, U.; Pauly, M.; Hay, A.: CESA7 and microtubules pattern complex secondary cell walls in explosive fruit of Cardamine hirsuta. The Plant Cell 38 (3), koag062 (2026)

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Fu, L.; Cui, W.; Chen, Y.; Wu, D.; Sun, H.-Q.: Biased multi-view contrastive learning with attentive masking for spatial transcriptomic analysis. Briefings in Bioinformatics 27 (3), bbag215 (2026)

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Gao, H.; Ding, N.; Wu, Y.; Coupland, G.: FT florigen proteins in photoperiodic signaling: Conservation and diversity in their regulation, structure, and function,. Molecular Plant 19 (5), pp. 964 - 986 (2026)

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Goldbecker, E. S.; Varshney, D.; Holzhausen, A.; Darienko, T.; Zhou, H.; Dadras, A.; Pfeifer, L.; Pröschold, T.; Lopez-Gomez, E.; Woelken, E. et al.; Permann, C.; Wollenweber, T. E.; Becker, K.; König, S.; Hadacek, F.; Li, F.-W.; Feussner, I.; Fernandez-Pozo, N.; Holzinger, A.; Maumus, F.; Marques, A.; Buschmann, H.; Schwartzenberg, K. v.; de Vries, J.; Rensing, S. A.: The Spirogyra pratensisgenome illuminates the evolution of developmental programs and spiral chloroplast biology,. The Plant Cell 38 (8), koag224 (2026)

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Gómez-Ramos, I.; Sánchez-Villegas, R.; Mohan, A. V.; Lavergne, C.; Cerca, J.; Márquez-Corro, J. I.; Marques, A.; Martín-Bravo, S.; Luceño, M.; Lucek, K. et al.; Escudero, M.: Chromosomal inversions accelerate genetic evolution and drive ecological speciation across an island gradient. Proceedings of the National Academy of Sciences of the United States of America 123 (33), e2604805123 (2026)

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Jhu, M.Y.; Minne, M.; Luo, Z.; Dörpholz, H.; Yao, J.; Mukhtar, M.S.; Mathieu, F.; Peirats-Llobet, M.; Lee, T.; Formosa-Jordan, P. et al.; Song, S.; Libault, M.; Hsu, C.W.; Nolan, T.M.; Nobori, T.; Anderton, C.R.; Schmitz, R.J.; Jackson, D.; Moreno-Risueno, M.; Nelissen, H.; Simon, R.; Sozzani, R.; Sugimoto, K.: Unlocking the Full Potential of Spatial Omics in Plants: Practical Challenges, Solutions, and a Path Forward. The Plant Cell, koag282 (2026)

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Jobe, T. O.; Litholdo Jr, C. G.; Stolze, S. C.; Stephan, L.; Westermann, J.; Harzen, A.; Hulskamp, M.; Nakagami, H.; Boisson-Dernier, A.: Multiomics analyses of mutants for Marchantia polymorpha FERONIA and MARIS reveal a link between cell wall integrity and abscisic acid responses. Plant and Cell Physiology, pcag015 (2026)

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Kramml, H. M.; Herpell, J.; Priemer, C.; Wessely, Z.; Schindler, F.; Berger, A.; Kellner, M.; Plott, S.; Dohovits, A.; Schmidt, T. et al.; Kerpan, P.; Afjehi-Sadat, L.; Chaturvedi, P.; Ghatak, A.; Brenner, M.; Pierides, I.; Fragner, L.; Temsch, E. M.; Trevisan, F.; Ibrahim, M.; Fromwald, F.; Bellaire, A.; Simakov, O.; Huber, W.; Luttge, U.; Paun, O.; Wicke, S.; Weiss-Schneeweiss, H.; Bachmann, G.; Weckwerth, W.: Clusia genomes shed light on the evolution and diversity of crassulacean acid metabolism physiotypes. Nature Communications 17 (1), 3937 (2026)

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Lee, Y. J.; Zhang, D.; Stolze, S. C.; Saridis, G.; Ebert, M. K.; Nakagami, H.; Doehlemann, G.: Ustilago maydis disrupts carbohydrate signaling networks to induce hypertrophy in host cells. Nature Communications 17 (1), 1990 (2026)

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Luna, G.; Costa, L.; Pezzini, F. F.; Karimi, N.; Strijk, J. S.; Carvalho-Sobrinho, J.; Colli-Silva, M.; Marques, A.; Souza, G.: How much can reticulate evolution entangle plant systematics? Revisiting subfamilial classification of the Malvatheca clade (Malvaceae) on the basis of phylogenomics. Frontiers in Plant Science 16, 1717745 (2026)

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Mahiwal, S.; Andersen, T. G.: The life and legacy of the root endodermis: A spatiotemporal view of function and developmen. Current Opinion in Plant Biology 93, 102933 (2026)

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Malisic, M.; Copeland, C.; Amrhein, A.; Zhang, P.; Hashimoto, M.; Harbort, C. J.; Lee, T.; Tandron Moya, Y. A.; Van Dijck, L.; Kiel, N. et al.; Kopriva, S.; Metzger, S.; Garrido-Oter, R.; Giehl, R. F. H.; Schulze-Lefert, P.: Arabidopsis uses distinct coumarins and bacterial pathways for pH-adaptive iron acquisition. Cell 189 (21), pp. 6829 - 6846.e9 (2026)

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Mendler, M.; Krause, K.; Zuendorf, S.; Sannak, P.; Tänzler, P.; Stolze, S.; Nakagami, H.; Turck, F.: Epigenetic gene regulation is controlled by distinct regulatory complexes utilizing specialized paralogs of TELOMERE REPEAT BINDING FACTORS. PLOS Genetics 22 (4), e1012114 (2026)

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Journal Article

Mercadal, J.; Tremblay, S.; Kraska, L.; Hutten, M. A.; Formosa-Jordan, P.: Lateral inhibition governs ancestral cellular patterning in fossil and extant liverworts. Development 153 (14), dev205696 (2026)

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Neto, C.; Theeuwen, T.P. J. M.; Flood, P. J.; Unger, P.; Goektay, M.; Aarts, M. G. M.; Hancock, A. M.: Uncovering adaptation with a new Arabidopsis thaliana multiparent intercross population. Genetics 232 (2), PMID 374636, p. iyaf227 (2026)

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Ntoanidou, S.; Paloukopoulou, C.; Bazakos, C.; Patelou, E.; Chintiroglou, P.-I.; Kanioura, A.; Gklavakis, E.; Karioti, A.; Kostas, S.; Kanellis, A. K.: Integrated genetic and -omics analyses revealed Salvia officinalis genotypes high in carnosic acid content linked to distinct genetic backgrounds. Industrial Crops and Products 245, 123336 (2026)

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Oliveri, H.; Cozzolino, E.; Goriely, A.: A multiscale theory for network advection- reaction-diffusion. Journal of Mathematical Biology 92, 65 (2026)

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Oliveri, H.; Godin, C.; Cheddadi, I.: Towards a hydromechanical theory of plant active matter. Quantitative Plant Biology (2026)

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Oliveri, H.; Lessinnes, T.; Moulton, D.; Goriely, A.: Chirality and Handedness of Bodies and Fields. Reviews of Modern Physics (2026)

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Parker, J. E.; Wang, J.: A fellowship of the rings in plant defence. Nature (2026)

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Parween, S.; Nagarajan, A. P.; Alghamdi, A. K.; Eida, A. A.; Lafi, F. F.; Albanna, L.; Salem, N.; Abu-Irmaileh, B.; Pirzada, Z. A.; Siddique, S. et al.; Garrido-Oter, R.; Schulze-Lefert, P.; Saad, M. M.; Hirt, H.: Desert Plant Endophyte Genome Database: a curated repository of endophytic bacterial genomes across arid ecosystems. DATABASE-the journal of biological databases and curation 2026, baag020 (2026)

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Peleke, F. F.; Zumkeller, S. M.; Schirmer, D.; Schmitz, G.; Hartwig, T.; Engelhorn, J.; Weizel, S.; Schmitt, A. O.; Jores, T.; Szymanski, J.: Genome-wide modelling of plant transcription factor binding captures regulatory variants associated with phenotypic traits. Nature Communications 17 (1), 4913 (2026)

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Prior, M. J.; Weidauer, D.; Locci, F.; Liao, J.-Y.; Kuwata, K.; Deng, C.; Ye, H. B.; Cai, Q.; Bezrutczyk, M.; Zhao, C. et al.; Jonikas, M. C.; Pilot, G.; Jin, H.; Parker, J. E.; Frommer, W. B.; Kim, J.-Y.: The Arabidopsis neutral amino acid transporter UmamiT20 confers Botrytis cinerea susceptibility. Journal of Experimental Botany 77 (4), PMID 9882906, pp. 1003 - 1012 (2026)

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Punt, W.; Kraege, A.; Metzger, S.; Schmitz, N.; Zhu, J.; Hacquard, S.; Bonkowski, M.; Snelders, N. C.; Thomma, B. P. H. J.: Differential contributions of an antimicrobial effector from Verticillium dahliae to virulence and tomato microbiota assembly across natural soils. Microbiome 14 (1), 111 (2026)

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Rahnamae, N.; Metzger, L.; Hoerdemann, L.; Korfmann, K.; Khan, A. S.; Oezoglan, Y.; Dent, C. I.; Amar, S.; Wijfjes, R. Y.; Ali, T. et al.; Schmitz, G.; Stich, B.; Tellier, A.; de Meaux, J.: Contemporary hybridization among Arabis floodplain species creates opportunities for adaptation. New Phytologist 249, pp. 1542 - 1557 (2026)

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Ritter, K.; Gaugler, V.; Stolze, S. C.; Ghosh, R.; Jayamon, A.; Yadav, R.; Wollensack, F.; Laha, D.; Nakagami, H.; Schaaf, G., G. et al.; Jessen, H. J.: Affinity-Based Interactome Mapping of Inositol Pyrophosphates Reveals 4/6-PP-InsP5-Binding Proteins in Plants. Advanced Science 13 (26), e24290 (2026)

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Rodriguez Maroto, G.; Wang, K.; Casanova Ferrer, P.; Cerise, M.; Coupland, G.; Formosa-Jordan, P.: Time-dependent bistability leads to critical slowing down during floral transition in Arabidopsis. Nature Communications 17 (1), 8973 (2026)

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Salinas Gamboa, R.; Fernandes, J. B.; Lian, Q.; Singh, D. K.; Durand, S.; Sahu, D.; Capilla-Pérez, L.; Lopéz, H.; Kalde, A.; Mercier, R.: The deSUMOylase SPF2 and the cohesin regulators SGO2 and CTF18 suppress crossovers near centromeres. Nature Plants 12, pp. 1498 - 1513 (2026)

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Sashidhar, N.; Coupland, G.: In perennial Arabis alpina, CONSTANS and FLOWERING LOCUS T have common and distinct effects on flowering and inflorescence architecture. New Phytologist (2026)

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Singh, D. K.; Mahlandt, A.; Durand, S.; Jolivet, S.; Walkemeier, B.; Taochy, C.; Solier, V.; Derkacheva, M.; Siddiqi, I.; Cromer, L. et al.; Mercier, R.: Cohesin and its regulation promote monopolar kinetochore orientation at meiosis I in Arabidopsis. Current Biology 36 (8), pp. 1994 - 2007 (2026)

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Singh Yadav, A. S.; Russell, N. J.; Hernandez, A. I.; Petlewski, A. R.; Johnson, A. R.; Grinage, A. D.; Banuna, B.; Guan, C. J.; Mahood, E. H.; Younkin, G. C. et al.; Thomas, H. R.; Phillips, H. R.; Harline, K.; Flasco, M.; Miller, M. B.; Scinto-Madonich, N. J.; Szeluga, N. M.; Mendoza, P. N.; Formosa-Jordan, P.; Roeder, A. H. K.: Modeling of gene regulatory networks: an annotated glossary. Trends in Plant Science 31 (5), pp. 585 - 607 (2026)

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Skodra, C.; Michailidis, M.; Raptis, P.; Giannoutsou, E.; Adamakis, I.-D. S.; Kontomina, E.-A.; Samiotaki, M.; Bazakos, C.; Tanou, G.; Molassiotis, A.: Silicon-induced tissue-specific reprogramming of the ripening transition in kiwifruit. Postharvest Biology and Technology 232, 113983 (2026)

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Tergemina, E.; Neto, C.; Rashid, M. M.; Dinis, H.; Salt, D. E.; Hancock, A. M.: Convergent evolution increases boron transport through SNPs and tandem duplications at BOR1 and BOR2 in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 123 (13), e2525676123 (2026)

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Tian, H.; Yang, Z.; Lian, Q.; Sun, H.-Q.; Zhang, X.; Liu, S.; Li, X.; Ban, M.; Yu, E.; Li, C. et al.; Song, C.; Chen, Y.; Li, L.; Fu, Y. F.; Liu, L.: Circadian oscillations in chromatin accessibility systematically orchestrate rhythmic gene transcription in soybean. The Plant Cell 38 (4), koag063 (2026)

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Titeli, V. S.; Michailidis, M.; Skodra, C.; Dalakouras, A.; Samiotaki, M.; Tanou, G.; Bazakos, C.; Molassiotis, A.: Transcription factors PaWRKY57 and PaNAC29 regulate fruit color and growth during sweet cherry development. Plant Physiology 200 (2), kiaf647 (2026)

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Tremblay, S.; Mercadal Melía, J.: Homology of the dark cells of Paleozoic liverworts with the specialized oil body cells of modern liverworts (Marchantiophyta). New Phytologist (2026)

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Wang, Y.; Gao, C.; Liu, F.; Liu, Y.; Zhou, Z.; Wang, Q.; Zhang, F.; Cheng, H.; Jiang, X.; Wang, W. et al.; Wang, B.; Tang, Y.; Zhou, F.; Wang, G.; Wang, Y.-P.; Yang, W.; Schulze-Lefert, P.; Liu, D.; Bai, Y.; Zhou, J.-M.: Mutually beneficial interactions between bacteria and Arabidopsis promote phosphorus nutrition and growth. Cell (2026)

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Wang, Y.; Zahn, I. E.; Heidemann, B.; Fuentes, R. R.; Underwood, C. J.: Synthetic Apomeiosis in Tomato via the Mutagenesis of SlSPO11-1, SlREC8, and SlTAM to Engineer Mitosis Instead of Meiosis. Methods in Molecular Biology 2987, pp. 255 - 273 (2026)

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MPIPZ Scientific Publications since 2002

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