MPIPZ Scientific Publications since 2002

Journal Article (2464)

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Skodra, C.; Michailidis, M.; Raptis, P.; Giannoutsou, E.; Adamakis, I.-D. S.; Kontomina, E.-A.; Samiotaki, M.; Bazakos, C.; Tanou, G.; Molassiotis, A.: Silicon-induced tissue-specific reprogramming of the ripening transition in kiwifruit. Postharvest Biology and Technology 232, 113983 (2026)
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Ahern, A.; Thompson, T. B.; Oliveri, H.; Lorthois, S.; Goriely, A.: Modelling cerebrovascular pathology and the spread of amyloid beta in Alzheimer's disease. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences 481 (2311), 20240548 (2025)
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Albernaz, V. B.; Mata-Sucre, Y.; Sader, M. A.; Rodriguez, P. E.; Targueta, C.P.; Antunes, A. M.; Pinto, R. B.; Marques, A.; Rocha, D. M. S. D. A.; Souza, G. et al.; Soares, T. N.: Integrative systematics of the Brazilian tree "sucupira": morphological, cytogenetic and genomic boundaries of Pterodon emarginatus Vogel and P. pubescens (Benth.) Benth. (Leguminosae, Papilionoideae). Systematics and Biodiversity 23 (1), 2474979 (2025)
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Almeida, C.; Marques, A.: Giant mitogenomes in Rhynchospora are a result of nuclear gene and retrotransposon insertions in intergenic spaces. Annals of Botany, mcaf098 (2025)
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Amrhein, A.; Zhang, M.; Hacquard, S.; Heintz-Buschart, A.; Wippel, K.: Pseudomonas intra-genus competition determines the protective function of synthetic bacterial communities in Arabidopsis thaliana. PLOS Biology 23 (7), e3002882 (2025)
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Barbosa, L. H. S.; Amorim, L.; Ribeiro, R. V.; Neumann, U.; Timmers, T.; Andersen, T. G.; Sposito, M. B.; Appezzato-da-Gloria, B.: Late Leaf Rust Monocyclic Components and Primary Metabolism of Raspberry Plants Facing Water Deficit. Plant Pathology (2025)
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Barbosa, L. H. S.; Neumann, U.; Timmers, T.; Andersen, T. G.; Appezzato-da-Glória, B.: Histopathology of Aculeastrum americanum on Rubus idaeus and insights into the chloroplast-pathogen interaction. Frontiers in Plant Science 16, 1630100 (2025)
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Bartels, D.; Giarola, V.; Chandler, J. W.: Unravelling the molecular network of desiccation tolerance in resurrection plants started with the model plant Craterostigma plantagineum. Planta 262 (2), 37 (2025)
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Benitez-Benitez, C.; Mohan, A. V.; Sanchez-Villegas, R.; Gomez-Ramos, I.; Valdes-Florido, A.; Lucek, K.; Slovak, M.; Kolar, F.; Leitch, I. J.; Luceno, M. et al.; Larridon, I.; Carta, A.; Cusco-Borras, J.; Maguilla, E.; Montero-Ramirez, A.; Meirmans, P. G.; Scott, A. D.; Martin-Bravo, S.; Escudero, M.: Bridging micro and macroevolution: insights from chromosomal dynamics in plants. Frontiers in Plant Science 16, 1606450 (2025)
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Biancucci, M.; Chirivi, D.; Baldini, A.; Badenhorst, E.; Dobetti, F.; Khahani, B.; Formentin, E.; Eguen, T.; Turck, F.; Moore, J. P. et al.; Tavakol, E.; Wenkel, S.; Lo Schiavo, F.; Ezquer, I.; Brambilla, V.; Horner, D.; Chiara, M.; Perrella, G.; Betti, C.; Fornara, F.: Mutations in HEADING DATE 1 affect transcription and cell wall composition in rice. Plant Physiology 197 (4), kiaf120 (2025)
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Brazel, A. J.; Manoj, N.S.; Turck, F.; Ó’Maoiléidigh, D.S.: Measuring CO2 assimilation of Arabidopsis thaliana whole plants and seedlings. Plant Science 350 (January), 112295 (2025)
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Calabria, J.; Wang, L.; Rast-Somssich, M. I.; Chen, H.-W.; Watt, M.; Persson, S.; Andersen, T. G.; Idnurm, A.; Somssich, M.: Resolving spatially distinct phytohormone response zones in Arabidopsis thaliana roots colonized by Fusarium oxysporum. Journal of Experimental Botany, erae516 (2025)
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Carrillo-Carrasco, V. P.; Hernandez-Garcia, J.; Girou, C.; Grubor, I.; Keller, J.; Lim, E.; Schmidt, V.; Sorensen, I.; Vosolsobe, S.; Buschmann, H. et al.; Delaux, P.-M.; Domozych, D.; Holzinger, A.; Nakagami, H.; Nishiyama, T.; Petrasek, J.; Renault, H.; Rensing, S. A.; Rose, J. K. C.; Sekimoto, H.; Delwiche, C. D.; Weijers, D.; de Vries, J.: A roadmap to developing unified streptophyte algal model systems. Current Biology 35 (14), pp. R725 - R738 (2025)
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Celestini, S.; Duchoslav, M.; Nezamivand-Chegini, M.; Gerchen, J.; Sramkova, G.; Wijfjes, R.; Krejcova, A.; Kuzmanovic, N.; Spaniel, S.; Schneeberger, K. et al.; Yant, L.; Kolar, F.: Genomic basis of adaptation to serpentine soil in two Alyssum species shows convergence with Arabidopsis across 20 million years of divergence. Annals of Botany, mcaf141 (2025)
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Chesneau, G.; Herpell, J.; Garrido Oter, R.; Hacquard, S.: From synthetic communities to synthetic ecosystems: exploring causalities in plant-microbe-environment interactions. New Phytologist 245 (2), pp. 496 - 502 (2025)
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Chesneau, G.; Herpell, J.; Wolf, S. M., S. M.; Perin, S.; Hacquard, S.: MetaFlowTrain: a highly parallelized 1 and modular fluidic system for studying exometabolite-mediated inter-organismal interactions. Nature Communications 16, 3310 (2025)
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Chrysostomakis, I.; Mozer, A.; Di-Nizo, C. B.; Fischer, D.; Sargheini, N.; von der Mark, L.; Huettel, B.; Astrin, J. J.; Topfer, T.; Bohne, A.: A high-quality reference genome for the Ural Owl (Strix uralensis) enables investigations of cell cultures as a genomic resource for endangered species. GigaScience 14, giaf106 (2025)
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Copeland, C.; Schulze-Lefert, P.; Ma, K.-W.: Potential and challenges for application of microbiomes in agriculture. The Plant Cell 37 (8), koaf185 (2025)
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Durand, S.; Lian, Q.; Solier, V.; Fernandes, J. B.; Mercier, R.: MutLγ enforces meiotic crossovers in Arabidopsis thaliana. Nucleic Acids Research 53 (5), gkaf157 (2025)
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Engelhorn, J.; Snodgrass, S.; Kok, A.; Seetharam, A.S.; Schneider, M.; Kiwit Singh A., T.; Banf, M.; Khaipho-Burch, M.; Runcie, D.E.; Camargo, V.S. et al.; Torres-Rodriguez, J.V.; Sun, G.; Stam, M.; Fiorani, F.; Schnable, J.C.; Bass, H.W.; Hufford, M.B.; Stich, B.; Frommer, W. B.; Ross-Ibarra, J.; Hartwig, T.: Genetic variation at transcription factor binding sites largely explains phenotypic heritability in maize. Nature Genetics (2025)
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Fan, R.; Feng, L.; Liu, Y.; Tang, Q.; Zhao, Y.; Li, Y.; Gong, S.; Lin, R.; Huang, S.; Qi, T. et al.; Foerderer, A.; Yang, L.; Wang, Y.; Chai, J.; Schulze-Lefert, P.; He, H.; Shen, Q.-H.: An NLR receptor confers broad-spectrum resistance to diversified powdery mildew sublineages in wheat and barley. Plant Biotechnology Journal (2025)
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Gao, H.; Ding, N.; Wu, Y.; Yu, D.; Zhou, S.-Z.; Stolze, S. C.; Vincent, C.; Rodriguez Maroto, G.; de los Reyes, P.; Harzen, A. et al.; Cerise, M.; da Silveira Falavigna, V.; Li, E.; Timmers, T.; Neumann, U.; Nakagami, H.; Hu, J.-Y.; Chai, J.; Coupland, G.: Florigen activation complex forms via multifaceted assembly in Arabidopsis. Nature (2025)
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Garrido Oter, R.: A nitrogen-fixing bacterium forms symbioses on land and at sea. Nature Microbiology 10 (10), pp. 2363 - 2364 (2025)
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Gonzalo, A.; Fernandes, J. B.: Deciphering how dog roses with an odd chromosome copy number sexually reproduce. Nature 643 (8070), pp. 42 - 43 (2025)
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Guan, R.; Garrido Oter, R.: Integrated diversity and network analyses reveal drivers of microbiome dynamics. mSystems 10 (10), e0056425 (2025)
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Heidemann, B.; Primetis, E.; Zahn, I.E.; Underwood, C. J.: To infinity and beyond: recent progress, bottlenecks, and potential of clonal seeds by apomixis. The Plant Journal 121 (4), e70054 (2025)
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Herklotz, V.; Zhang, M.; Nascimento, T. H. D.; Kalfusová, R.; Lunerová, J.; Fuchs, J.; Harpke, D.; Huettel, B.; Pfordt, U.; Wissemann, V. et al.; Kovařík, A.; Marques, A.; Ritz, C.M.: Bimodal centromeres in pentaploid dogroses shed light on their unique meiosis. Nature 643, pp. 148 - 157 (2025)
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Hong, K.; Nakano, M.; Tang, Y.; Jeanguenin, L.; Kang, W.; Wang, Y.; Zuo, L.; Li, P.; He, J.; Jiang, W. et al.; Huang, R.; Matsui, H.; Wang, Y.; Nakagami, H.; Li, B.; Li, X.; Xie, K.; Fukushima, K.; Guo, L.; Han, X.; Katagiri, F.; Hattori, M.; Tsuda, K.: Emergence of isochorismate- based salicylic acid biosynthesis within Brassicales. Proceedings of the National Academy of Sciences of the United States of America 122 (29), e2506170122 (2025)
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Huang, S.; Wang, J.; Song, R.; Jia, A.; Xiao, Y.; Sun, Y.; Wang, L.; Mahr, D.; Wu, Z.; Han, Z. et al.; Li, X.; Parker, J. E.; Chai, J.: Balanced plant helper NLR activation by a modified host protein complex. Nature 639, pp. 447 - 455 (2025)
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Johnston-Monje, D.; Martinez, J. I.: Seed Surface Sterilization Can Alter Root Microbiomes, Increase Endophyte Diversity and Enhance Plant Growth. Applied Sciences 15 (17), 9545 (2025)
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Kadiyala, U.; Sprinzak, D.; Monk, N. A. M.; Taylor, S. E.; Verd, B.; Sonnen, K. F.; Moon, L.; Roeder, A. H. K.; Perez-Carrasco, R.; Formosa-Jordan, P.: From genes to patterns: five key dynamical systems concepts to decode developmental regulatory mechanisms. Development 152 (14), dev204617 (2025)
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Kassianides, C.; Goriely, A.; Oliveri, H.: The multiscale mechanics of axon durotaxis. Journal of the Mechanics and Physics of Solids 200, 106134 (2025)
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Koprivova, A.; Berka, M.; Berková, V.; Ristova, D.; Tuerksoy, G. M.; Schwier, M.; Westhoff, P.; Cerny, M.; Kopriva, S.: Multilevel Analysis of Response to Plant Growth Promoting and Pathogenic Bacteria in Arabidopsis Roots. Molecular Plant-Microbe Interactions (2025)
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Kraege, A.; Chavarro-Carrero, E.; Schnell, E.; Heilmann-Heimbach, S.; Becker, K.; Koehrer, K.; Huettel, B.; Sargheini, N.; Schiffer, P.; Waldvogel, A.-M. et al.; Thomma, B. P. H. J.; Rovenich, H.: High quality genome assembly and annotation (v1) of the eukaryotic freshwater microalga Coccomyxa elongata SAG 216-3b. G3-Genes - Genomes - Genetics 15 (2), jkae294 (2025)
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Kramer, J.; Zuebert, C.; Huettel, B.; Kube, M.; Hoelzle, L. E.: The complete genome of Mycoplasmoides cavipharyngis strain 117C, a close relative of hemotrophic mycoplasma. Microbiology Resource Announcements, e00556-24 (2025)
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Lawson, A. W.; Macha, A.; Neumann, U.; Gunkel, M.; Chai, J.; Behrmann, E.; Schulze-Lefert, P.: Purifying recombinant proteins from Nicotiana benthamiana for structural studies. Nature Protocols (2025)
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Leng, Y.; Kümmel, F.; Zhao, M.; Molnár, I.; Doležel, J.; Logemann, E.; Koechner, P.; Xi, P.; Yang, S.; Moscou, M. J. et al.; Fiedler, J. D.; Du, Y.; Steuernagel, B.; Meinhardt, S.; Steffenson, B. J.; Schulze-Lefert, P.; Zhong, S.: A barley MLA immune receptor is activated by a fungal nonribosomal peptide effector for disease susceptibility. New Phytologist 245, pp. 1197 - 1215 (2025)
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Li, T.; Wang, C.; Pan, J.; Tabusam, J.; Li, Y.; Yao, J.; Chen, W.; Wang, Y.; Gao, W.; Rong, J. et al.; Ahmad, Z.; Houben, A.; Zhu, S.; Jin, S.; Zhang, Y.: Exploring potential strategies for haploid induction based on double fertilization in plants. Plant Biotechnology Journal 23 (9), pp. 4000 - 4016 (2025)
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Liu, Y.; Wang, J.; Zuo, C.; Fan, W.; Yuan, C.; Zeng, J.; Yu, H.; Tong, Z.; Sui, X.; Xu, Y. et al.; Zhu, M.; Tao, X.; Chen, J.; Kuang, H.; Novikova, P. Y.; Huang, C.: Identification of a gene conferring broad-spectrum orthotospovirus resistance in Solanaceae. Science Advances 11 (25), eadw4333 (2025)
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Loo, E. P. I.; Huguet-Tapia, J. C.; Selvaraj, M.; Stiebner, M.; Killing, B.; Buchholzer, M.; Schepler-Luu, V.; Hartwig, T.; Valdez Gutierrez, S. P.; Rast-Somssich, M. I. et al.; Szurek, B.; Tohme, J.; Charraviaga, P.; White, F.F.; Yang, B.; Frommer, W. B.: Removal of Transgenes and Evaluation of Yield Penalties in Genome Edited Bacterial Blight Resistant Rice Varieties. Plant Biotechnology Journal (2025)
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Mahiwal, S.; Andersen, T. G.; Shen, D.: Establishment and functions of the Casparian strip. Molecular Plant 18 (8), pp. 1249 - 1252 (2025)
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Marques, A.; Drinnenberg, I. A.: Same but different: Centromere regulations in holocentric insects and plants. Current Opinion in Cell Biology 93, 102484 (2025)
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Martignago, D.; da Silveira Falavigna, V.; Coupland, G.; Conti, L.: Dancing molecules: group A bZIPs and PEBPs at the heart of plant development and stress responses. Journal of Experimental Botany 26, eraf034 (2025)
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Martins, G.; Oliveira dos Santos, J. D.; Barros da Silva, F.; Marques, A.; Van-Lume, B.; Souza, G.; Almeida, C.: Can repeatomic similarity favour interspecific hybridization? Comparative analysis of repetitive elements among Spondias species (Anacardiaceae). Botanical Journal of the Linnean Society, boaf053 (2025)
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Molina, D.; Horvath, S.; Zhang, X.; Xiao, W.; Ragab, N.; Ripper, D.; Kilian, J.; Andersen, T. G.; Ragni, L.: Members of the MYB68 subclade orchestrate cork differentiation by regulating stem cell proliferation and suberin deposition. Cell Reports 44 (8), 116048 (2025)
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Mozer, A.; Di-Nizo, C. B.; Consul, A.; Huettel, B.; Jaeger, R.; Akintayo, A.; Erhardt, C.; Fenner, L.; Fischer, D.; Forat, S. et al.; Gimnich, F.; Grobe, P.; Martin, S.; Nathan, V.; Saeed, A.; von Der Mark, L.; Woehle, C.; Olek, K.; Misof, B.; Astrin, J. J.: FOGS: A SNPSTR Marker Database to Combat Wildlife Trafficking and a Cell Culture Bank for Ex-Situ Conservation. Molecular Ecology Resources, e14062 (2025)
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Nasiopoulou, E.; Michailidis, M.; Skodra, C.; Adamakis, I.-D. S.; Samiotaki, M.; Tanou, G.; Bazakos, C.; Dalakouras, A.; Molassiotis, A.: The ethylene response factor ERF1A regulates UV-C-induced delayed ripening in peach fruit. Plant Physiology 199 (2), kiaf409 (2025)
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Nicholas, N. J.; Belato, P. B.; Sarabia Oliver, L.; Chakraborty, A.; Roeder, A. H. K.; Fox, D. T.; Formosa-Jordan, P.: Spatial ploidy inference using quantitative imaging. Cell Reports Methods, 101249 (2025)
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Ogolowa, B. O.; Brelsford, A.; Fjeldsa, J.; Fulgione, A.; Hadjioannou, L.; Henderson, E.C.; Moyle, R. G.; Moysi, M.; Nwankwo, E.C.; Rancilhac, L. et al.; Smith, T. B.; von Holdt, B. M.; Kirschel, A. N. G.: Plio-Pleistocene Climatic Fluctuations and Divergence With Gene Flow Drive Continent-Wide Diversification in an African Bird. Molecular Ecology 34 (10), e17770 (2025)
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Oliveri, H.; Cheddadi, I.: Hydromechanical field theory of plant morphogenesis. Journal of the Mechanics and Physics of Solids 196, 106035 (2025)
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