MPIPZ Scientific Publications since 2002

Journal Article (2050)

Journal Article
Aecyo, P.; Marques, A.; Huettel, B.; Silva, A.; Esposito, T.; Ribeiro, E.; Leal, I.R.; Gagnon, E.; Souza, G.; Pedrosa-Harand, A.: Plastome evolution in the Caesalpinia group (Leguminosae) and its application in phylogenomics and populations genetics. Planta 254 (2), 27 (2021)
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Andersen, T. G.; Molina, D.; Kilian, J.; Franke, R. B.; Ragni, L.; Geldner, N.: Tissue-Autonomous Phenylpropanoid Production Is Essential for Establishment of Root Barriers. Current Biology 31 (5), pp. 965 - 977.e (2021)
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Bauer, S.; Yu, D.; Lawson, A. W.; Saur, I. M. L.; Frantzeskakis, L.; Kracher, B.; Logemann, E.; Chai, J.; Maekawa, T.; Schulze-Lefert, P.: The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold. PLoS Pathogens 17 (2), e1009223 (2021)
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Bhatia, N.; Runions, A.; Tsiantis, M.: Leaf Shape Diversity: From Genetic Modules to Computational Models. Annual Review of Plant Biology 72, pp. 325 - 356 (2021)
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Bi, G.; Su, M.; Li, N.; Liang, Y.; Dang, S.; Xu, J.; Hu, M.; Wang, J.; Zou, M.; Deng, Y. et al.; Li, Q.; Huang, S.; Li, J.; Chai, J.; He, K.; Chen, Y. h.; Zhou, J.-M.: The ZAR1 resistosome is a calcium-permeable channel triggering plant immune signaling. Cell 184 (13), pp. 3528 - 3541.e12 (2021)
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Bruessow, F.; Bautor, J.; Hoffmann, G.; Yildiz, I.; Zeier, J.; Parker, J. E.: Natural variation in temperature-modulated immunity uncovers transcription factor bHLH059 as a thermoresponsive regulator in Arabidopsis thaliana. PLoS Genetics 17 (1), e1009290 (2021)
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Burns, R.; Mandakova, T.; Gunis, J.; Soto-Jiménez, L. M.; Liu, C.; Lysak, M. A.; Novikova, P. Y.; Nordborg, M.: Gradual evolution of allopolyploidy in Arabidopsis suecica. Nature Ecology & Evolution (2021)
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Capilla-Perez, L.; Durand, S.; Hurel, A.; Lian, Q.; Chambon, A.; Taochy, C.; Solier, V.; Grelon, M.; Mercier, R.: The synaptonemal complex imposes crossover interference and heterochiasmy in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 118 (12), e2023613118 (2021)
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Chaudhry, V.; Runge, P.; Sengupta, P.; Doehlemann, G.; Parker, J. E.; Kemen, E.: Shaping the leaf microbiota: plant-microbe-microbe interactions. Special Issue 72 (1), pp. 36 - 56 (2021)
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Copeland, C.: Same but different: examining the molecular mechanisms of intercellular rhizobial infection. Plant Physiology 185 (3), pp. 754 - 756 (2021)
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Costa, L.; Marques, A.; Buddenhagen, C.; Thomas, W. W.; Huettel, B.; Schubert, V.; Dodsworth, S.; Houben, A.; Souza, G.; Pedrosa-Harand, A.: Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA. Annals of Botany, mcab063 (2021)
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Dongus, J. A.; Parker, J. E.: At the nexus of intracellular and surface receptor immunity. Current Opinion in Plant Biology 32, 102039 (2021)
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Eitzen, K.; Sengupta, P.; Kroll, S.; Kemen, E.; Doehlemann, G.: A fungal member of the Arabidopsis thaliana phyllosphere antagonizes Albugo laibachii via a GH25 lysozyme. eLife 10, e65306 (2021)
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Emonet, A.; Zhou, F.; Vacheron, J.; Heiman, C. M.; Tendon, V. D.; Ma, K.-W.; Schulze-Lefert, P.; Keel, C.; Geldner, N.: Spatially Restricted Immune Responses Are Required for Maintaining Root Meristematic Activity upon Detection of Bacteria. Current Biology 31 (5) (2021)
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Frerigmann, H.; Hoecker, U.; Gigolashvili, T.: New Insights on the Regulation of Glucosinolate Biosynthesis via COP1 and DELLA Proteins in Arabidopsis Thaliana. Frontiers in Plant Science 12, 680255 (2021)
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Goektay, M.; Fulgione, A.; Hancock, A.: A New Catalog of Structural Variants in 1,301 A. thaliana Lines from Africa, Eurasia, and North America Reveals a Signature of Balancing Selection at Defense Response Genes. Molecular Biology and Evolution 38 (4), pp. 1498 - 1511 (2021)
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Gol, L.; Haraldsson, E. B.; von Korff, M.: Ppd-H1 integrates drought stress signals to control spike development and flowering time in barley. Special Issue 72 (1), pp. 122 - 136 (2021)
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Graf, J. S.; Schorn, S.; Kitzinger, K.; Ahmerkamp, S.; Woehle, C.; Huettel, B.; Schubert, C. J.; Kuypers, M. M. M.; Milucka, J.: Anaerobic endosymbiont generates energy for ciliate host by denitrification. NATURE 591 (7850), pp. 445 - 450 (2021)
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Hofstatter, P. G.; Thangavel, G.; Castellani, M.; Marques, A.: Meiosis Progression and Recombination in Holocentric Plants: What Is Known? Frontiers in Plant Science 12, 617 (2021)
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Holbein, J.; Shen, D.; Andersen, T. G.: The endodermal passage cell - just another brick in the wall? New Phytologist 230 (4), pp. 1321 - 1328 (2021)
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Hou, S.; Thiergart, T.; Vannier, N.; Mesny, F.; Ziegler, J.; Pickel, B.; Hacquard, S.: A microbiota-root-shoot circuit favours Arabidopsis growth over defence under suboptimal light. Nature Plants (2021)
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Hou, S.; Wolinska, K. W.; Hacquard, S.: Microbiota-root-shoot-environment axis and stress tolerance in plants. Current Opinion in Plant Biology 62, 102028 (2021)
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Jiao, W.-B.; Patel, V.; Klasen, J. R.; Liu, F.; Pecinkova, P.; Ferrand, M.; Gy, I.; Camilleri, C.; Effgen, S.; Koornneef, M. et al.; Pecinka, A.; Loudet, O.; Schneeberger, K.: The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thaliana. Molecular Biology and Evolution 38 (4), pp. 1225 - 1240 (2021)
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Joshi, M.; Kapopoulou, A.; Laurent, S.: Impact of Genetic Variation in Gene Regulatory Sequences: A Population Genomics Perspective. Frontiers in Genetics 12, 660899 (2021)
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Kawaharada, Y.; Sandal, N.; Gupta, V.; Jin, H.; Kawaharada, M.; Taniuchi, M.; Ruman, H.; Nadzieja, M.; Andersen, K.r. R.; Schneeberger, K. et al.; Stougaard, J.; Andersen, S. U.: Natural variation identifies a Pxy gene controlling vascular organisation and formation of nodules and lateral roots in Lotus japonicus. New Phytologist (2021)
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Khouider, S.; Borges, F.; LeBlanc, C.; Ungru, A.; Schnittger, A.; Martienssen, R.; Colot, V.; Bouyer, D.: Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function. Nature Communications 12 (1), 410 (2021)
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Koornneef, M.: A Central Role for Genetics in Plant Biology. Annual Review of Plant Biology 72, pp. 1 - 16 (2021)
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Kremer, J. M.; Sohrabi, R.; Paasch, B. C.; Rhodes, D.; Thireault, C.; Schulze-Lefert, P.; Tiedje, J. M.; He, S. Y.: Peat-based gnotobiotic plant growth systems for Arabidopsis microbiome research. Nature Protocols 16, pp. 2450 - 2470 (2021)
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Ma, K.-W.; Niu, Y.; Jia, Y.; Ordon, J.; Copeland, C.; Emonet, A.; Geldner, N.; Guan, R.; Stolze, S. C.; Nakagami, H. et al.; Garrido-Oter, R.; Schulze-Lefert, P.: Coordination of microbe–host homeostasis by crosstalk with plant innate immunity. Nature Plants (2021)
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Madrid-Herrero, E.; Severing, E.; De Ansorena, E.; Kiefer, C.; Brand, L.; Martinez-Gallegos, R.; Woetzel, S.; Kemi, U.; Jiao, W.-B.; Schneeberger, K. et al.; Coupland, G.: Transposition and duplication of MADS-domain transcription factor genes in annual and perennial Arabis species modulates flowering. Proceedings of the National Academy of Sciences of the United States of America 118 (39), e2109204118 (2021)
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Mayer, T.; Mari, A.; Almario, J.; Murillo-Roos, M.; Abdullah, H. S. M.; Dombrowski, N.; Hacquard, S.; Kemen, E. M.; Agler, M. T.: Obtaining deeper insights into microbiome diversity using a simple method to block host and nontargets in amplicon sequencing. Molecular Ecology Resources 21 (6), pp. 1952 - 1965 (2021)
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Monroe, J. G.; McKay, J. K.; Weigel, D.; Flood, P. J.: The population genomics of adaptive loss of function. Heredity 126, pp. 383 - 395 (2021)
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O'Maoiléidigh, D. S.; van Driel, A. D.; Singh, A.; Sang, Q.; Le Bec, N.; Vincent, C.; Bertran Garcia de Olalla, B.; Vayssières, A.; Romera Branchat, M.; Severing, E. et al.; Martinez-Gallegos, R.; Coupland, G.: Systematic analyses of the MIR172 family members of Arabidopsis define their distinct roles in regulation of APETALA2 during floral transition. PLoS Biology 19 (2), e3001043 (2021)
Journal Article
Ökmen, B.; Schwammbach, D.; Bakkeren, G.; Neumann, U.; Doehlemann, G.: The Ustilago hordei-barley interaction is a versatile system for characterization of fungal effectors. Journal of Fungi 7 (86) (2021)
Journal Article
Paulisic, S.; Qin, W.; Veraszto, H. A.; Then, C.; Alary, B.; Nogue, F.; Tsiantis, M.; Hothorn, M.; Martinez-Garcia, J. F.: Adjustment of the PIF7-HFR1 transcriptional module activity controls plant shade adaptation. EMBO Journal 40, e104273 (2021)
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Petrella, R.; Cucinotta, M.; Mendes, M. A.; Underwood, C. J.; Colombo , L.: The emerging role of small RNAs in ovule development, a kind of magic. Plant Reproduction (2021)
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Pieper, R.; Tomé, F.; Pankin, A.; von Korff, M.: FLOWERING LOCUS T4 delays flowering and decreases floret fertility in barley. Special Issue 72 (1), pp. 107 - 121 (2021)
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Plesken, C.; Pattar, P.; Reiss, B.; Noor, Z. N.; Zhang, L.; Klug, K.; Huettel, B.; Hahn, M.: Genetic Diversity of Botrytis cinerea Revealed by Multilocus Sequencing, and Identification of B. cinerea Populations Showing Genetic Isolation and Distinct Host Adaptation. Frontiers in Plant Science 12, 663027 (2021)
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Provart, N. J.; Brady, S. M.; Parry, G.; Schmitz, R. J.; Queitsch, C.; Bonetta, D.; Waese, J.; Schneeberger, K.; Loraine, A.E.: Anno genominis XX: 20 years of Arabidopsis genomics. The Plant Cell 33 (4), pp. 832 - 845 (2021)
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Pruitt, R. N.; Locci, F.; Wanke, F.; Zhang, L.; Saile, S. C.; Joe, A.; Karelina, D.; Hua, C.; Fröhlich, K.; Wan, W.-L. et al.; Hu, M.; Rao, S.; Stolze, S. C.; Harzen, A.; Gust, A. A.; Harter, K.; Joosten, M. H. A. J.; Thomma, B. P. H. J.; Zhou, J.-M.; Dangl, J. L.; Weigel, D.; Nakagami, H.; Oecking, C.; Kasmi, F. E.; Parker, J. E.; Nürnberger, T.: The EDS1–PAD4–ADR1 node mediates Arabidopsis pattern-triggered immunity. Nature (2021)
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Sanagi, M.; Aoyama, S.; Kubo, A.; Lu, Y.; Sato, Y.; Ito, S.; Abe, M.; Mitsuda, N.; Ohme-Takagi, M.; Kiba, T. et al.; Nakagami, H.; Rolland, F.; Yamaguchi, J.; Imaizumi, T.; Sato, T.: Low nitrogen conditions accelerate flowering by modulating the phosphorylation state of FLOWERING BHLH 4 in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 118 (19), e2022942118 (2021)
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Saur, I. M. L.; Hueckelhoven, R.: Recognition and defence of plant-infecting fungal pathogens. Journal of Plant Physiology 256, 153324 (2021)
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Saur, I. M. L.; Panstruga, R.; Schulze-Lefert, P.: NOD-like receptor-mediated plant immunity: from structure to cell death. Nature Reviews Immunology 21, pp. 305 - 318 (2021)
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Savadel, S. D.; Hartwig, T.; Turpin, Z. M.; Vera, D. L.; Lung, P. Y.; Sui, X.; Blank, M.; Frommer, W. B.; Dennis, J. H.; Zhang, J. et al.; Bass, H. W.: The native cistrome and sequence motif families of the maize ear. PLoS Genetics 17 (8), e1009689 (2021)
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Schneider, C.; Woehle, C.; Greve, C.; D'Haese, C. A.; Wolf, M.; Hiller, M.; Janke, A.; Balint, M.; Huettel, B.: Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola). GigaScience 10 (5), giab035, pp. 1 - 12 (2021)
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Schrinner, S.; Goel, M.; Wulfert, M.; Spohr, P.; Schneeberger, K.; Klau, G. W.: Using the longest run subsequence problem within homology-based scaffolding. Algorithms for Molecular Biology 16 (1), 11 (2021)
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Schuetz, V.; Frindte, K.; Cui, J.; Zhang, P.; Hacquard, S.; Schulze-Lefert, P.; Knief, C.; Schulz, M.; Doermann, P.: Differential Impact of Plant Secondary Metabolites on the Soil Microbiota. Frontiers in Microbiology 12, 666010 (2021)
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Schurack, S.; Depotter, J.R.L.; Gupta, D.; Thines, M.; Doehlemann, G.: Comparative transcriptome profiling identifies maize line specificity of fungal effectors in the maize-Ustilago maydis interaction. The Plant Journal (2021)
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Sergeeva, A.; Liu, H.; Mai, H.-J.; Mettler-Altmann, T.; Kiefer, C.; Coupland, G.; Bauer, P.: Cytokinin-promoted secondary growth and nutrient storage in the perennial stem zone of Arabis alpina. The Plant Journal 105 (6), pp. 1459 - 1476 (2021)
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Soppe, W. J. J.; Vinegra de la Torre, N.; Albani, M.: The Diverse Roles of FLOWERING LOCUS C in Annual and Perennial Brassicaceae Species. Frontiers in Plant Science 12, 627258 (2021)
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