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Journal Article (56)

  1. Journal Article
    Flood, P.; Theeuwen, T. P. J. M.; Schneeberger, K.; Keizer, P.; Kruijer, W.; Severing, E.; Kouklas, E.; Hageman, J. A.; Wijfjes, R.; Calvo-Baltanas, V. et al.; Becker, F. F. M.; Schnabel, S. K.; Willems, L. A. J.; Ligterink, W.; van Arkel, J.; Mumm, R.; Gualberto, J. M.; Savage, L.; Kramer, D. M.; Keurentjes, J. J. B.; van Eeuwijk, F.; Koornneef, M.; Harbinson, J.; Aarts, M. G. M.; Wijnker, E.: Reciprocal cybrids reveal how organellar genomes affect plant phenotypes. Nature Plants 6, pp. 13 - 21 (2020)
  2. Journal Article
    Chopra, D.; Mapar, M.; Stephan, L.; Albani, M.; Deneer, A.; Coupland, G.; Willing, E.-M.; Schellmann, S.; Schneeberger, K.; Fleck, C. et al.; Schrader, A.; Huelskamp, M.: Genetic and molecular analysis of trichome development in Arabis alpina. Proceedings of the National Academy of Sciences of the United States of America 116 (24), pp. 12078 - 12083 (2019)
  3. Journal Article
    Dittberner, H.; Becker, C.; Jiao, W.-B.; Schneeberger, K.; Hölzel, N.; Tellier, A.; de Meaux, J.: Strengths and potential pitfalls of hay transfer for ecological restoration revealed by RAD-seq analysis in floodplain Arabis species. Molecular Ecology 28 (17), pp. 3887 - 3901 (2019)
  4. Journal Article
    Kiefer, C.; Willing, E.-M.; Jiao, W.-B.; Sun, H.-Q.; Piednoel, M.; Huemann, U.; Hartwig, B.; Huemann, U.; Koch, M. A.; Schneeberger, K.: Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylation. Nature Plants 5 (8), pp. 846 - 855 (2019)
  5. Journal Article
    Mohrholz, A.; Sun, H.-Q.; Gloeckner, N.; Hummel, S.; Kolukisaoglu, U.; Schneeberger, K.; Harter, K.: The Striking Flower-in-Flower Phenotype of Arabidopsis thaliana Nossen (No-0) is Caused by a Novel LEAFY Allele. PLANTS-BASEL 8 (12), 599 (2019)
  6. Journal Article
    Rossmann, S.; Richter, R.; Sun, H.; Schneeberger, K.; Töpfer, R.; Zyprian, E.; Theres, K.: Mutations in the miR396 binding site of the growth-regulating factor gene VvGRF4 modulate inflorescence architecture in grapevine. The Plant Journal (2019)
  7. Journal Article
    Sun, H.-Q.; Rowan, B. A.; Flood, P. J.; Brandt, R.; Fuss, J.; Hancock, A. M.; Michelmore, R. W.; Huettel, B.; Schneeberger, K.: Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination. Nature Communications 10, 4310 (2019)
  8. Journal Article
    Amorim, M. d. F.; Willing, E.-M.; Szabo, E. X.; Francisco-Mangilet, A. G.; Droste-Borel, I.; Macek, B.; Schneeberger, K.; Laubinger, S.: The U1 snRNP Subunit LUC7 Modulates Plant Development and Stress Responses via Regulation of Alternative Splicing. The Plant Cell 30 (11), pp. 2838 - 2854 (2018)
  9. Journal Article
    Flood, P. J.; Theeuwen, T. P. J. M.; Schneeberger, K.; Keizer, P.; Kruijer, W.; Severing, E.; Kouklas, E.; Hageman, J. A.; Becker, F. F. M.; Schnabel, S. K. et al.; Willems, L.; Ligterink, W.; van Arkel, J.; Mumm, R.; Gualberto, J. M.; Savage, L.; Kramer, D. M.; Kreurentjes, J. J. B.; van Eeuwijk, F.; Koornneef, M.; Harbinson, J.; Aarts, M. G. M.; Wijnker, E.: Reciprocal cybrids reveal how organellar genomes affect plant phenotypes. bioRxiv (2018)
  10. Journal Article
    Ibanez, C.; Delker, C.; Martinez, C.; Buerstenbinder, K.; Janitza, P.; Lippmann, R.; Ludwig, W.; Sun, H.-Q.; James, G. V.; Klecker, M. et al.; Grossjohann, A.; Schneeberger, K.; Prat, S.; Quint, M.: Brassinosteroids Dominate Hormonal Regulation of Plant Thermomorphogenesis via BZR1. Current Biology 28 (2), pp. 303 - 310.e3 (2018)
  11. Journal Article
    Sun, H.-Q.; Ding, J.; Piednoel, M.; Schneeberger, K.: findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies. Bioinformatics 34 (4), pp. 550 - 557 (2018)
  12. Journal Article
    Sun, H.-Q.; Rowan, B. A.; Flood, P. J.; Brandt, R.; Fuss, J.; Hancock, A. M.; Michelmore, R. W.; Huettel, B.; Schneeberger, K.: Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination. bioRxiv (2018)
  13. Journal Article
    Jiao, W.-B.; Garcia Accinelli, G.; Hartwig, B.; Kiefer, C.; Baker, D.; Severing, E.; Willing, E.-M.; Piednoel, M.; Woetzel, S.; Madrid-Herrero, E. et al.; Huettel, B.; Huemann, U.; Reinhardt, R.; Koch, M. A.; Swan, D.; Clavijo, B.; Coupland, G.; Schneeberger, K.: Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data. Genome Research 27 (5), pp. 778 - 786 (2017)
  14. Journal Article
    Jiao, W.-B.; Schneeberger, K.: The impact of third generation genomic technologies on plant genome assembly. Current Opinion in Plant Biology 36, pp. 64 - 70 (2017)
  15. Journal Article
    Schneeberger, K.; Henderson, I.: Editorial overview: Genome studies and molecular genetics. Current Opinion in Plant Biology 36, pp. IV - V (2017)
  16. Journal Article
    Zhou, Y.; Tergemina, E.; Tergemina, E.; Cui, H.; Foerderer, A.; Hartwig, B.; James, G. V.; Schneeberger, K.; Turck, F.: Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 114 (18), pp. 4833 - 4838 (2017)
  17. Journal Article
    Bewick, A.; Ji, L.; Niederhuth, C.; Willing, E.-M.; Hofmeister, B. T.; Shi, X.; Wang, L.; Lu, Z.; Rohr, N.; Hartwig, B. et al.; Kiefer, C.; Deal, R. B.; Schmutz, J.; Grimwood, J.; Stroud, H.; Jacobsen, S. E.; Schneeberger, K.; Zhang, X.; Schmitz, R. J.: On the origin and evolutionary consequences of gene body DNA methylation. Proceedings of the National Academy of Sciences of the United States of America 113 (32), pp. 9111 - 9116 (2016)
  18. Journal Article
    Cartolano, M.; Huettel, B.; Hartwig, B.; Reinhardt, R.; Schneeberger, K.: cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing. PLoS One 11 (6), e0157779 (2016)
  19. Journal Article
    Fransz, P.; Linc, G.; Lee, C.-R.; Aflitos, S. A.; Lasky, J. R.; Toomajian, C.; Ali, H.; Peters, J.; van Dam, P.; Ji, X. et al.; Kuzak, M.; Gerats, T.; Schubert, I.; Schneeberger, K.; Colot, V.; Martienssen, R.; Koornneef, M.; Nordborg, M.; Juenger, T. E.; de Jong, H.; Schranz, M. E.: Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. The Plant Journal 88 (2), pp. 159 - 178 (2016)
  20. Journal Article
    Klasen, J. R.; Barbez, E.; Meier, L.; Meinshausen, N.; Buehlmann, P.; Koornneef, M.; Busch, W.; Schneeberger, K.: A multi-marker association method for genome-wide association studies without the need for population structure correction. Nature Communications 7 (2016)
  21. Journal Article
    Schneeberger, K.: Plant genic methylation: Conserved for 400 million years. Nature Plants 2 (2) (2016)
  22. Journal Article
    Stuttmann, J.; Peine, N.; Garcia, A. V.; Wagner, C.; Choudhury, S. R.; Wang, Y.; James, G. V.; Griebel, T.; Alcázar, R.; Tsuda, K. et al.; Schneeberger, K.; Parker, J. E.: Arabidopsis thaliana DM2h (R8) within the Landsberg RPP1-like Resistance Locus Underlies Three Different Cases of EDS1-Conditioned Autoimmunity. PLoS Genetics 12 (4) (2016)
  23. Journal Article
    Willing, E.-M.; Piofczyk, T. P.; Albert, A.; Winkler, J. B.; Schneeberger, K.; Pecinka, A.: UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana. Nature Communications 7 (2016)
  24. Journal Article
    Zapata, L.; Ding, J.; Willing, E.-M.; Hartwig, B.; Bezdan, D.; Jiao, W.-B.; Patel, V.; James, G. V.; Koornneef, M.; Ossowski, S. et al.; Schneeberger, K.: Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms. Proceedings of the National Academy of Sciences of the United States of America 113 (28) (2016)
  25. Journal Article
    Zhou, Y.; Hartwig, B.; James, G. V.; Schneeberger, K.; Turck, F.: Complementary Activities of TELOMERE REPEAT BINDING Proteins and Polycomb Group Complexes in Transcriptional Regulation of Target Genes. Plant Cell 28 (1), pp. 87 - 101 (2016)
  26. Journal Article
    Andrés, F. L.; Romera Branchat, M.; Martinez-Gallegos, R.; Patel, V.; Schneeberger, K.; Jang, S.; Altmuller, J.; Nurnberg, P.; Coupland, G.: Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant physiology 169 (3), pp. 2187 - 99 (2015)
  27. Journal Article
    Gutjahr, C.; Gobbato, E.; Choi, J.; Riemann, M.; Johnston, M. G.; Summers, W.; Carbonnel, S.; Mansfield, C.; Yang, S.-Y.; Nadal, M. et al.; Acosta, I.; Takano, M.; Jiao, W.-B.; Schneeberger, K.; Kelly, K. A.; Paszkowski, U.: Rice perception of symbiotic arbuscular mycorrhizal fungi requires the karrikin receptor complex. Science Magazine 350 (6267), pp. 1521 - 1524 (2015)
  28. Journal Article
    Hagmann, J.; Becker, C.; Mueller, J.; Stegle, O.; Meyer, R. C.; Wang, G.; Schneeberger, K.; Fitz, J.; Altmann, T.; Bergelson, J. et al.; Borgwardt, K.; Weigel, D.: Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage. PLOS GENETICS 11 (1) (2015)
  29. Journal Article
    Liang, S.C.; Hartwig, B.; Perera, P.; Mora-Garcia, S.; de Leau, E.; Thornton, H.; Lima de Alves, F.; Rapsilber, J.; Yang, S.; James, G. V. et al.; Schneeberger, K.; Finnegan, E. J.; Turck, F.; Goodrich, J.: Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genetics 11 (12) (2015)
  30. Journal Article
    Lu, X.; Dittgen, J.; Pislewska-Bednarek, M.; Molina, A.; Schneider, B.; Svatos, A.; Doubsky, J.; Schneeberger, K.; Weigel, D.; Bednarek, P. et al.; Schulze-Lefert, P.: Mutant allele-specific uncoupling of PEN3 functions reveals engagement of the ABC transporter in distinct tryptophan metabolic pathways. Plant Physiology 168, pp. 814 - 827 (2015)
  31. Journal Article
    Mateos, J. L.; Madrigal, P.; Tsuda, K.; Rawat, V.; Rawat, V.; Richter, R.; Romera Branchat, M.; Fornara, F.; Schneeberger, K.; Krajewski, P. et al.; Coupland, G.: Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis. Genome Biology 16 (2015)
  32. Journal Article
    Rowan, B. A.; Patel, V.; Weigel, D.; Schneeberger, K.: Rapid and Inexpensive Whole-Genome Genotyping-by-Sequencing for Crossover Localization and Fine-Scale Genetic Mapping. G3-GENES GENOMES GENETICS 5 (3), pp. 385 - 398 (2015)
  33. Journal Article
    Sun, H.-Q.; Schneeberger, K.: SHOREmap v3.0: fast and accurate identification of causal mutations from forward genetic screens. Methods in molecular biology (Clifton, N.J.) 1284, pp. 381 - 95 (2015)
  34. Journal Article
    Willing, E.-M.; Rawat, V.; Mandakova, T.; Maumus, F.; James, G. V.; Nordstroem, K.; Becker, C.; Warthmann, N.; Chica, C.; Szarzynska, B. et al.; Zytnicki, M.; Albani, M.; Kiefer, C.; Bergonzi, S.; Castaings, L.; Mateos, J. L.; Berns, M. C.; Bujdoso, N.; Piofczyk, T. P.; de Lorenzo, L.; Barrero-Sicilia, C.; Mateos, I.; Piednoel, M.; Hagmann, J.; Chen-Min-Tao, R.; Iglesias-Fernandez, R.; Schuster, S. C.; Alonso-Blanco, C.; Roudier, F.; Carbonero, P.; Paz-Ares, J.; Davis, S. J.; Pecinka, A.; Quesneville, H.; Colot, V.; Lysak, M. A.; Weigel, D.; Coupland, G.; Schneeberger, K.: Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants 1 (2) (2015)
  35. Journal Article
    Bolger, A.; Scossa, F.; Bolger, M. E.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E. A.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S. A.; Schijlen, E.; Jimenez-Gomez, J. M.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L. R.; Maloof, J. N.; Sinha, N.; van Ham, R. C. H. J.; Lankhorst, R. K.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J. K. C.; Zamir, D.; Carrari, F. F.; Giovannoni, J. J.; Weigel, D.; Usadel, B.; Fernie, A. R.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Reviews Genetics 46 (9), pp. 1034 - 1038 (2014)
  36. Journal Article
    Delker, C.; Sonntag, L.; James, G. V.; Janitza, P.; Ibanez, C.; Ziermann, H.; Peterson, T.; Denk, K.; Mull, S.; Ziegler, J. et al.; Davis, S. J.; Schneeberger, K.; Quint, M.: The DET1-COP1-HY5 Pathway Constitutes a Multipurpose Signaling Module Regulating Plant Photomorphogenesis and Thermomorphogenesis. CELL REPORTS 9 (6), pp. 1983 - 1989 (2014)
  37. Journal Article
    Dettmer, J.; Ursache, R.; Campilho, A.; Miyashima, S.; Belevich, I.; O'Regan, S.; Mullendore, D. L.; Yadav, S. R.; Lanz, C.; Beverina, L. et al.; Papagni, A.; Schneeberger, K.; Weigel, D.; Stierhof, Y.-D.; Moritz, T.; Knoblauch, M.; Jokitalo, E.; Helariutta, Y.: CHOLINE TRANSPORTER-LIKE1 is required for sieve plate development to mediate long-distance cell-to-cell communication. Nature Communications 5 (2014)
  38. Journal Article
    Juraniec, M.; Lequeux, H.; Hermans, C.; Willems, G.; Nordborg, M.; Schneeberger, K.; Salis, P.; Vromant, M.; Lutts, S.; Verbruggen, N.: Towards the discovery of novel genetic component involved in stress resistance in Arabidopsis thaliana. New Phytologist 201 (3), pp. 810 - 824 (2014)
  39. Journal Article
    Kalhorzadeh, P.; Hu, Z.; Cools, T.; Amiard, S.; Willing, E.-M.; De Winne, N.; Gevaert, K.; De Jaeger, G.; Schneeberger, K.; White, C. I. et al.; De Veylder, L.: Arabidopsis thaliana RNase H2 Deficiency Counteracts the Needs for the WEE1 Checkpoint Kinase but Triggers Genome Instability. The Plant Cell 26 (9), pp. 3680 - 3692 (2014)
  40. Journal Article
    Pankin, A.; Campoli, C.; Dong, X.; Kilian, B.; Sharma, R.; Himmelbach, A.; Saini, R.; Davis, S. J.; Stein, N.; Schneeberger, K. et al.; von Korff, M.: Mapping-by-Sequencing Identifies HvPHYTOCHROME C as a Candidate Gene for the early maturity 5 Locus Modulating the Circadian Clock and Photoperiodic Flowering in Barley. Genetics 198 (1), pp. 383 - 396 (2014)
  41. Journal Article
    Rishmawi, L.; Sun, H.; Schneeberger, K.; Huelskamp, M.; Schrader, A.: Rapid Identification of a Natural Knockout Allele of ARMADILLO REPEAT-CONTAINING KINESIN1 That Causes Root Hair Branching by Mapping-By-Sequencing. Plant Physiology 166 (3), pp. 1280 - 1287 (2014)
  42. Journal Article
    Schneeberger, K.: Using next-generation sequencing to isolate mutant genes from forward genetic screens. Nature Reviews Genetics 15 (10), pp. 662 - 676 (2014)
  43. Journal Article
    Zee, P. C.; Mendes-Soares, H.; Yu, Y.-T. N.; Kraemer, S. A.; Keller, H.; Ossowski, S.; Schneeberger, K.; Velicer, G. J.: A SHIFT FROM MAGNITUDE TO SIGN EPISTASIS DURING ADAPTIVE EVOLUTION OF A BACTERIAL SOCIAL TRAIT. EVOLUTION 68 (9), pp. 2701 - 2708 (2014)
  44. Journal Article
    Bergonzi, S.; Albani, M.; Ver Loren van Themaat, E.; Nordstroem, K.; Wang, R.; Schneeberger, K.; Moerland, P. D.; Coupland, G.: Mechanisms of Age-Dependent Response to Winter Temperature in Perennial Flowering of Arabis alpina. Science 340 (6136), pp. 1094 - 1097 (2013)
  45. Journal Article
    James, G. V.; Patel, V.; Nordstroem, K.; Klasen, J. R.; Salome, P. A.; Weigel, D.; Schneeberger, K.: User guide for mapping-by-sequencing in Arabidopsis. GENOME BIOLOGY 14 (6) (2013)
  46. Journal Article
    Koenig, D.; Jimenez-Gomez, J. M.; Kimura, S.; Fulop, D.; Chitwood, D. H.; Headland, L. R.; Kumar, R.; Covington, M. F.; Devisetty, U. K.; Tat, A. V. et al.; Tohge, T.; Bolger, A.; Schneeberger, K.; Ossowski, S.; Lanz, C.; Xiong, G.; Taylor-Teeples, M.; Brady, S. M.; Pauly, M.; Weigel, D.; Usadel, B.; Fernie, A. R.; Peng, J.; Sinha, N. R.; Maloof, J. N.: Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERLICA 110 (28), pp. E2655 - E2662 (2013)
  47. Journal Article
    Kopischke, M.; Westphal, L.; Schneeberger, K.; Clark, R.; Ossowski, S.; Wewer, V.; Fuchs, R.; Landtag, J.; Hause, G.; Doermann, P. et al.; Lipka, V.; Weigel, D.; Schulze-Lefert, P.; Scheel, D.; Rosahl, S.: Impaired sterol ester synthesis alters the response of Arabidopsis thaliana to Phytophthora infestans. The Plant Journal 73 (3), pp. 456 - 468 (2013)
  48. Journal Article
    Logemann, E.; Birkenbihl, R.; Rawat, V.; Schneeberger, K.; Schmelzer, E.; Somssich, I. E.: Functional dissection of the PROPEP2 and PROPEP3 promoters reveals the importance of WRKY factors in mediating microbe-associated molecular pattern-induced expression. New Phytologist 198 (4), pp. 1165 - 1177 (2013)
  49. Journal Article
    Nordstroem, K.; Albani, M.; James, G. V.; Gutjahr, C.; Hartwig, B.; Turck, F.; Paszkowski, U.; Coupland, G.; Schneeberger, K.: Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers. Nature biotechnology 31 (4), pp. 325 - 330 (2013)
  50. Journal Article
    Wijnker, E.; James, G. V.; Ding, J.; Becker, F.; Klasen, J. R.; Rawat, V.; Rowan, B. A.; de Jong, D. F.; de Snoo, C. B.; Zapata, L. et al.; Huettel, B.; de Jong, H.; Ossowski, S.; Weigel, D.; Koornneef, M.; Keurentjes, J. J. B.; Schneeberger, K.: The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana. ELIFE 2 (2013)
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