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Journal Article (80)

  1. Journal Article
    Flood, P. J.; Theeuwen, T. P. J. M.; Schneeberger, K.; Keizer, P.; Kruijer, W.; Severing, E.; Kouklas, E.; Hageman, J. A.; Becker, F. F. M.; Schnabel, S. K. et al.; Willems, L.; Ligterink, W.; van Arkel, J.; Mumm, R.; Gualberto, J. M.; Savage, L.; Kramer, D. M.; Kreurentjes, J. J. B.; van Eeuwijk, F.; Koornneef, M.; Harbinson, J.; Aarts, M. G. M.; Wijnker, E.: Reciprocal cybrids reveal how organellar genomes affect plant phenotypes. bioRxiv (2018)
  2. Journal Article
    Fulgione, A.; Koornneef, M.; Roux, F.; Hermisson, J.; Hancock, A. M.: Madeiran Arabidopsis thaliana Reveals Ancient Long-Range Colonization and Clarifies Demography in Eurasia. Molecular Biology and Evolution 35 (3), pp. 564 - 574 (2018)
  3. Journal Article
    Mueller, N.A.; Zhang, L.; Koornneef, M.; Jiménez-Gómez, J. M.: Mutations in EID1 and LNK2 caused light-conditional clock deceleration during tomato domestication. Proceedings of the National Academy of Sciences of the United States of America 115 (27), pp. 7135 - 7140 (2018)
  4. Journal Article
    Wozny, D.; Kramer, K.; Finkemeier, I.; Acosta, I.; Koornneef, M.: Genes for seed longevity in barley identified by genomic analysis on near isogenic lines. Plant, Cell and Environment 41 (8), pp. 1895 - 1911 (2018)
  5. Journal Article
    Ariga, H.; Katori, T.; Tsuchimatsu, T.; Hirase, T.; Tajima, Y.; Parker, J. E.; Alcázar, R.; Koornneef, M.; Hoekenga, O.; Lipka, A. E. et al.; Gore, M. A.; Sakakibara, H.; Kojima, M.; Kobayashi, Y.; Iuchi, S.; Kobayashi, M.; Shinozaki, K.; Sakata, Y.; Hayashi, T.; Saijo, Y.; Taji, T.: NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis. Nature Plants 3 (2017)
  6. Journal Article
    Rishmawi, L.; Bühler, J.; Jaegle, B.; Hülskamp, M.; Koornneef, M.: Quantitative trait loci controlling leaf venation in Arabidopsis. Plant, Cell and Environment 40 (8), pp. 1429 - 1441 (2017)
  7. Journal Article
    van Esse, W.; Walla, A.; Finke, A.; Koornneef, M.; Pecinka, A.; von Korff, M.: Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174 (4), pp. 2397 - 2408 (2017)
  8. Journal Article
    Fransz, P.; Linc, G.; Lee, C.-R.; Aflitos, S. A.; Lasky, J. R.; Toomajian, C.; Ali, H.; Peters, J.; van Dam, P.; Ji, X. et al.; Kuzak, M.; Gerats, T.; Schubert, I.; Schneeberger, K.; Colot, V.; Martienssen, R.; Koornneef, M.; Nordborg, M.; Juenger, T. E.; de Jong, H.; Schranz, M. E.: Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. The Plant Journal 88 (2), pp. 159 - 178 (2016)
  9. Journal Article
    He, F.; Arce, A. L.; Schmitz, G.; Koornneef, M.; Novikova, P.; Beyer, A.; de Meaux, J.: The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus. Molecular Biology and Evolution 33 (8), pp. 2088 - 2101 (2016)
  10. Journal Article
    Horton, M. W.; Willems, G.; Sasaki, E.; Koornneef, M.; Nordborg, M.: The genetic architecture of freezing tolerance varies across the range of Arabidopsis thaliana. Plant Cell Environment 39 (11), pp. 2570 - 2579 (2016)
  11. Journal Article
    Klasen, J. R.; Barbez, E.; Meier, L.; Meinshausen, N.; Buehlmann, P.; Koornneef, M.; Busch, W.; Schneeberger, K.: A multi-marker association method for genome-wide association studies without the need for population structure correction. Nature Communications 7 (2016)
  12. Journal Article
    Zapata, L.; Ding, J.; Willing, E.-M.; Hartwig, B.; Bezdan, D.; Jiao, W.-B.; Patel, V.; James, G. V.; Koornneef, M.; Ossowski, S. et al.; Schneeberger, K.: Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms. Proceedings of the National Academy of Sciences of the United States of America 113 (28) (2016)
  13. Journal Article
    Barboza Barquero, L.; Nagel, K.A.; Jansen , M.; Klasen, J. R.; Kastenholz, B.; Braun, S.; Bleise, B.; Brehm, T.; Koornneef, M.; Fiorani, F.: Phenotype of Arabidopsis thaliana semi-dwarfs with deep roots and high growth rates under water limiting conditions is independent from the GA5 loss-of-function alleles. Annals of Botany (116), pp. 321 - 331 (2015)
  14. Journal Article
    Bühler, J.; Rishmawi, L.; Pflugfelder, D.; Huber, G.; Scharr, H.; Hülskamp, M.; Koornneef, M.; Schurr, U.; Jahnke, S.: phenoVein - A tool for leaf vein segmentation and analysis. Plant Physiology 169 (4), pp. 2359 - 2370 (2015)
  15. Journal Article
    El-Soda, M.; Kruijer, W.; Malosetti, M.; Koornneef, M.; Aarts, M. G. M.: Quantitative trait loci and candidate genes underlying genotype by environment interaction in the response of Arabidopsis thaliana to drought. Plant, Cell and Environment 38 (3), pp. 585 - 599 (2015)
  16. Journal Article
    Ilk, N.; Ding, J.; Ihnatowicz, A.; Koornneef, M.; Reymond, M.: Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2. New Phytologist 206 (1), pp. 422 - 435 (2015)
  17. Journal Article
    Koornneef, M.: Interview with Maarten Koornneef. Trends in Plant Science 20 (3), pp. 135 - 136 (2015)
  18. Journal Article
    Liller, C.; Neuhaus, R.; von Korff, M.; Koornneef, M.; van Esse, W.: Mutations in Barley Row Type Genes Have Pleiotropic Effects on Shoot Branching. PLoS One 10 (10) (2015)
  19. Journal Article
    Alcazar, R.; von Reth, M.; Bautor, J.; Chae, E.; Weigel, D.; Koornneef, M.; Parker, J.: Analysis of a Plant Complex Resistance Gene Locus Underlying Immune-Related Hybrid Incompatibility and Its Occurrence in Nature. PLoS Genetics 10 (12) (2014)
  20. Journal Article
    El-Soda, M.; Malosetti, M.; Zwaan, B. J.; Koornneef, M.; Aarts, M. G. M.: Genotype x environment interaction QTL mapping in plants: lessons from Arabidopsis. Trends in Plant Science 19 (6), pp. 390 - 398 (2014)
  21. Journal Article
    El-Soda, M.; Boer, M. P.; Bagheri, H.; Hanhart, C. J.; Koornneef, M.; Aarts, M. G. M.: Genotypeenvironment interactions affecting preflowering physiological and morphological traits of Brassica rapa grown in two watering regimes. Journal of Experimental Botany 65 (2), pp. 697 - 708 (2014)
  22. Journal Article
    Ihnatowicz, A.; Siwinska, J.; Meharg, A. A.; Carey, M.; Koornneef, M.; Reymond, M.: Conserved histidine of metal transporter AtNRAMP1 is crucial for optimal plant growth under manganese deficiency at chilling temperatures. New Phytologist 202 (4), pp. 1173 - 1183 (2014)
  23. Journal Article
    Barboza, L.; Effgen, S.; Alonso-Blanco, C.; Kooke, R.; Keurentjes, J. J. B.; Koornneef, M.; Alcázar, R.: Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley. Proceedings of the National Academy of Sciences of the United States of America 110 (39), pp. 15818 - 15823 (2013)
  24. Journal Article
    Debieu, M.; Tang, C.; Stich, B.; Sikosek, T.; Effgen, S.; Josephs, E.; Schmitt, J.; Nordborg, M.; Koornneef, M.; de Meaux, J.: Co-Variation between Seed Dormancy, Growth Rate and Flowering Time Changes with Latitude in Arabidopsis thaliana. PLOS ONE 8 (5) (2013)
  25. Journal Article
    Fournier-Level, A.; Wilczek, A. M.; Cooper, M. D.; Roe, J. L.; Anderson, J.; Eaton, D.; Moyers, B. T.; Petipas, R. H.; Schaeffer, R. N.; Pieper, B. et al.; Reymond, M.; Koornneef, M.; Welch, S. M.; Remington, D. L.; Schmitt, J.: Paths to selection on life history loci in different natural environments across the native range of Arabidopsis thaliana. Molecular Ecology 22 (13), pp. 3552 - 3566 (2013)
  26. Journal Article
    Huang, X.; Ding, J.; Effgen, S.; Turck, F.; Koornneef, M.: Multiple loci and genetic interactions involving flowering time genes regulate stem branching among natural variants of Arabidopsis. New Phytologist 199 (3), pp. 843 - 857 (2013)
  27. Journal Article
    Wijnker, E.; James, G. V.; Ding, J.; Becker, F.; Klasen, J. R.; Rawat, V.; Rowan, B. A.; de Jong, D. F.; de Snoo, C. B.; Zapata, L. et al.; Huettel, B.; de Jong, H.; Ossowski, S.; Weigel, D.; Koornneef, M.; Keurentjes, J. J. B.; Schneeberger, K.: The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana. ELIFE 2 (2013)
  28. Journal Article
    Alcázar, R.; Pecinka, A.; Aarts, M. G. M.; Fransz, P. F.; Koornneef, M.: Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Current Opinion in Plant Biology 15 (2), pp. 205 - 211 (2012)
  29. Journal Article
    Bagheri, H.; El-Soda, M.; van Oorschot, I.; Hanhart, C.; Bonnema, G.; Jansen-van den Bosch, T.; Mank, R.; Keurentjes, J.; Meng, L.; Wu, J. et al.; Koornneef, M.; Aarts, M. G. M.: Genetic analysis of morphological traits in a new, versatile, rapid-cycling Brassica rapa recombinant inbred line population. Frontiers in Plant Genetics and Genomics 3 (2012)
  30. Journal Article
    Huang, X.; Effgen, S.; Meyer, R. C.; Theres, K.; Koornneef, M.: Epistatic Natural Allelic Variation Reveals a Function of AGAMOUS-LIKE6 in Axillary Bud Formation in Arabidopsis. Plant Cell 24 (6), pp. 2364 - 2379 (2012)
  31. Journal Article
    Koornneef, M.: My favourite flowering image. Journal of Experimental Botany 64, doi: 10.1093/jxb/err413, pp. 5801 - 5803 (2012)
  32. Journal Article
    Chiang, G. C. K.; Bartsch, M.; Barua, D.; Nakabayashi, K.; Debieu, M.; Kronholm, I.; Koornneef, M.; Soppe, W.; Donohue, K.; de Meaux, J.: DOG1 expression is predicted by the seed-maturation environment and contributes to geographical variation in germination in Arabidopsis thaliana. Molecular Ecology 20 (16), pp. 3336 - 3349 (2011)
  33. Journal Article
    Huang, X.; Paulo, M.-J.; Boer, M.; Effgen, S.; Keizer, K.; Koornneef, M.; van Eeuwijk, F. A.: Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population. Proceedings of the National Academy of Sciences 108 (11), 10.1073/pnas.1100465108, pp. 4488 - 4493 (2011)
  34. Journal Article
    Keurentjes, J. J. B.; Willems, G.; van Eeuwijk, F.; Nordborg, M.; Koornneef, M.: A comparison of population types used for QTL mapping in Arabidopsis thaliana. Plant Genetic Resources: Characterization and Utilization 9, doi:10.1017/S1479262111000086, pp. 185 - 188 (2011)
  35. Journal Article
    Silady, R. A.; Effgen, S.; Koornneef, M.; Reymond, M.: Variation in Seed Dormancy Quantitative Trait Loci in Arabidopsis thaliana Originating from One Site. PLoS ONE 6 (6), e20886 (2011)
  36. Journal Article
    van Zanten, M.; Koini, M. A.; Geyer, R.; Liu, Y.; Brambilla, V.; Bartels, D.; Koornneef, M.; Fransz, P.; Soppe, W. J. J.: Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 108 (50), pp. 20219 - 20224 (2011)
  37. Journal Article
    Alcázar, R.; Garcia, A. V.; Kronholm, I.; de Meaux, J.; Koornneef, M.; Parker, J. E.; Reymond, M.: Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions. Nature Genetics 42, doi:10.1038/ng.704, pp. 1135 - 1139 (2010)
  38. Journal Article
    Bentsink, L.; Hanson, J.; Hanhart, C. J.; Blankestijn-De Vries, H.; Coltrane, C.; Keizer, P.; El-Lithy, M.; Alonso-Blanco, C.; de Andrés, M. T.; Reymond, M. et al.; van Eeuwijk, F.; Smeekens, S.; Koornneef, M.: Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways. Proceedings of the National Academy of Sciences 107, 10.1073/pnas.1000410107, pp. 4264 - 4269 (2010)
  39. Journal Article
    El-Lithy, M. E.; Reymond, M.; Stich, B.; Koornneef, M.; Vreugdenhil, D.: Relation among plant growth, carbohydrates and flowering time in the Arabidopsis Landsberg erecta × Kondara recombinant inbred line population. Plant, Cell & Environment 33, 10.1111/j.1365-3040.2010.02155.x, pp. 1369 - 1382 (2010)
  40. Journal Article
    Huang, X.; Schmitt, J.; Dorn, L.; Griffiths, C.; Effgen, S.; Takao, S.; Koornneef, M.; Donohue, K.: The earliest stages of adaptation in an experimental plant population: strong selection on QTLS for seed dormancy. Molecular Ecology 19, pp. 1335 - 1351 (2010)
  41. Journal Article
    Jansen, M. A. K.; Le Martret, B.; Koornneef, M.: Variations in constitutive and inducible UV-B tolerance; dissecting photosystem II protection in Arabidopsis thaliana accessions. Physiologia Plantarum 138 (1), pp. 22 - 34 (2010)
  42. Journal Article
    Koornneef, M.; Meinke, D.: The development of Arabidopsis as a model plant. SPECIAL ISSUE Arabidopsis: A rich harvest 10 years after completion of the genome sequence, 10.1111/j.1365-313X.2009.04086.x, pp. 909 - 921 (2010)
  43. Journal Article
    Sugliani, M.; Brambilla, V.; Clerkx, E. J. M.; Koornneef, M.; Soppe, W. J. J.: The Conserved Splicing Factor SUA Controls Alternative Splicing of the Developmental Regulator ABI3 in Arabidopsis. Plant Cell 22 (6), pp. 1936 - 1946 (2010)
  44. Journal Article
    Alonso-Blanco, C.; Aarts, M. G. M.; Bentsink, L.; Keurentjes, J. J. B.; Reymond, M.; Vreugdenhil, D.; Koornneef, M.: What Has Natural Variation Taught Us about Plant Development, Physiology, and Adaptation? Plant Cell 21, 10.1105/tpc.109.068114, pp. 1877 - 1896 (2009)
  45. Journal Article
    Fu, J.; Keurentjes, J. J. B.; Bouwmeester, H.; America, T.; Verstappen, F. W. A.; Ward, J. L.; Beale, M. H.; de Vos, C. H. R.; Dijkstra, M.; Scheltema, R. A. et al.; Johannes, F.; Koornneef, M.; Vreugdenhil, D.; Breitling, R.; Jansen, R. C.: System-wide molecular evidence for phenotypic buffering in Arabidopsis. Nature Genetics 41 (2), pp. 166 - 167 (2009)
  46. Journal Article
    Ghandilyan, A.; Barboza, L.; Tisné, S.; Granier, C.; Reymond, M.; Koornneef, M.; Schat, H.; Aarts, M. G. M.: Genetic analysis identifies quantitative trait loci controlling rosette mineral concentrations in Arabidopsis thaliana under drought. New Phytologist 184, 10.1111/j.1469-8137.2009.02953.x, pp. 180 - 192 (2009)
  47. Journal Article
    Ghandilyan, A.; Ilk, N.; Hanhart, C.; Mbengue, M.; Barboza, L.; Schat, H.; Koornneef, M.; El-Lithy, M.; Vreugdenhil, D.; Reymond, M. et al.; Aarts, M. G. M.: A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations. Journal of Experimental Botany 60 (5), doi:10.1093/jxb/erp084, pp. 1409 - 1425 (2009)
  48. Journal Article
    Sugliani, M.; Rajjou, L.; Clerkx, E. J. M.; Koornneef, M.; Soppe, W.: Natural modifiers of seed longevity in the Arabidopsis mutants abscisic acid insensitive3-5 (abi3-5) and leafy cotyledon1-3 (lec1-3). New Phytologist 184 (4), 10.1111/j.1469-8137.2009.03023.x, pp. 898 - 908 (2009)
  49. Journal Article
    Ainsworth, E. A.; Beier, C.; Calfapietra, C.; Ceulemans, R.; Durand-Tardif, M.; Farquhar, G. D.; Godbold, D. L.; Hendrey, G. R.; Hickler, T.; Kaduk, J. et al.; Karnosky, D. F.; Kimball, B. A.; Koerner, C.; Koornneef, M.; Lafarge, T.; Leakey, A. D. B.; Lewin, K. F.; Long, S. P.; Manderscheid, R.; Mcneil, D. L.; Mies, T. A.; Miglietta, F.; Morgan, J. A.; Nagy, J.; Norby, R. J.; Norton, R. M.; Percy, K. E.; Rogers, A.; Soussana, J. F.; Stitt, M.; Weigel, H. J.; White, J. W.: Next generation of elevated [CO2] experiments with crops: a critical investment for feeding the future world. Plant Cell and Environment 31 (9), pp. 1317 - 1324 (2008)
  50. Journal Article
    de Meaux, J.; Koornneef, M.: The cause and consequences of natural variation: the genome era takes off! Current Opinion in Plant Biology 11 (2), pp. 99 - 102 (2008)
 
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