Scientific Publications since 2002

Scientific Publications since 2002

Journal Article (1860)

  1. Journal Article
    Mueller, N.A.; Zhang, L.; Koornneef, M.; Jiménez-Gómez, J. M.: Mutations in EID1 and LNK2 caused light-conditional clock deceleration during tomato domestication. Proceedings of the National Academy of Sciences of the United States of America 115 (27), pp. 7135 - 7140 (2018)
  2. Journal Article
    Mulki, M.A.; Bi, X.; von Korff, M.: FLOWERING LOCUS T3 Controls Spikelet Initiation But Not Floral Development. Plant Physiology 178 (3), pp. 1170 - 1186 (2018)
  3. Journal Article
    Murchie, E. H.; Kefauver, S.; Luis Araus, J.; Muller, O.; Rascher, U.; Flood, P. J.; Lawson, T.: Measuring the dynamic photosynthome. ANNALS OF BOTANY 122 (2), pp. 207 - 220 (2018)
  4. Journal Article
    Myouga, F.; Takahashi, K.; Tanaka, R.; Nagata, N.; Kiss, A. Z.; Funk, C.; Nomura, Y.; Nakagami, H.; Jansson, S.; Shinozaki, K.: Stable Accumulation of Photosystem II Requires ONE-HELIX PROTEIN1 (OHP1) of the Light Harvesting-Like Family. Plant Physiology 176 (3), pp. 2277 - 2291 (2018)
  5. Journal Article
    Nobori, T.; Tsuda, K.: In planta Transcriptome Analysis of Pseudomonas syringae. Bio-protocol 8 (2018)
  6. Journal Article
    Nobori, T.; Mine, A.; Tsuda, K.: Molecular networks in plant-pathogen holobiont. FEBS Letters 592, pp. 1937 - 1953 (2018)
  7. Journal Article
    Nobori, T.; Velásquez, A. C.; Wu, J.; Kvitko, B. H.; Kremer, J. M.; Wang, Y.; He, S. Y.; Tsuda, K.: Transcriptome landscape of a bacterial pathogen under plant immunity. Proceedings of the National Academy of Sciences of the United States of America 115, pp. E3055 - E3064 (2018)
  8. Journal Article
    O'Maoiléidigh, D. S.: A Conserved Mechanism to Terminate Floral Meristems. The Plant Cell 30 (2), p. 260 - 260 (2018)
  9. Journal Article
    Oide, M.; Okajima, K.; Nakagami, H.; Kato, T.; Sekiguchi, Y.; Oroguchi, T.; Hikima, T.; Yamamoto, M.; Nakasako, M.: Blue light-excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from Arabidopsis. Journal of Biological Chemistry 293 (3), pp. 963 - 972 (2018)
  10. Journal Article
    Ordonez-Herrera, N.; Trimborn, L.; Menje, M.; Henschel, M.; Robers, L.; Kaufholdt, D.; Hänsch, R.; Adrian, J.; Ponnu, J.; Hoecker, U.: The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture. Plant Physiology 176, pp. 1327 - 1340 (2018)
  11. Journal Article
    Pankin, A.; Altmueller, J.; Becker, C.; von Korff, M.: Targeted resequencing reveals genomic signatures of barley domestication. Special Issue: Featured papers on ‘Plant proteases’ 218 (3), pp. 1247 - 1259 (2018)
  12. Journal Article
    Pislewska-Bednarek, M.; Nakano, R. T.; Hiruma, K.; Pastorczyk, M.; Sanchez-Vallet, A.; Singkaravanit-Ogawa, S.; Ciesiolka, D.; Takano, Y.; Molina, A.; Schulze-Lefert, P. et al.; Bednarek, P.: Glutathione Transferase U13 Functions in Pathogen-Triggered Glucosinolate Metabolism. Plant Physiology 176 (1), pp. 538 - 551 (2018)
  13. Journal Article
    Rasmann, S.; Vilas, J. S.; Glauser, G.; Cartolano, M.; Lempe, J.; Tsiantis, M.; Pannell, J. R.: Pleiotropic effect of the Flowering Locus C on plant resistance and defence against insect herbivores. Journal of Ecology 106 (3), pp. 1244 - 1255 (2018)
  14. Journal Article
    Robbins, C.; Thiergart, T.; Hacquard, S.; Garrido Oter, R.; Gans, W.; Peiter, E.; Schulze-Lefert, P.; Spaepen, S.: Root-associated bacterial and fungal community profiles of Arabidopsis thaliana are robust across contrasting soil P levels. Phytobiomes 2 (1) (2018)
  15. Journal Article
    Robin, G. P.; Kleemann, J.; Neumann, U.; Cabre, L.; Dallery, J.-F.; Lapalu, N.; O'Connell, R.J.: Subcellular localization screening of Colletotrichum higginsianum effector candidates identifies fungal proteins targeted to plant peroxisomes, Golgi bodies, and microtubules. Frontiers in Plant Science 9 (2018)
  16. Journal Article
    Sapala, A.; Runions, A.; Routier-Kierzkowska, A.-L.; Das Gupta, M.; Hong, L.; Hofhuis, H.; Verger, S.; Mosca, G.; Li, C.-B.; Hay, A. et al.; Hamant, O.; Roeder, A.H.K.; Tsiantis, M.; Prusinkiewicz, R.; Smith, R. S.: Why plants make puzzle cells, and how their shape emerges. eLife 7 (2018)
  17. Journal Article
    Song, B.; Mott, R.; Gan, X.: Recovery of novel association loci in Arabidopsis thaliana and Drosophila melanogaster through leveraging INDELs association and integrated burden test. PLoS Genetics 14 (10) (2018)
  18. Journal Article
    Sopeña-Torres, S.; Jorda, L.; Sanchez-Rodriguez, C.; Miedes, E.; Escudero, V.; Swamy, S.; Lopez, G.; Pislewska-Bednarek, M.; Lassowskat, I.; Lee, J. et al.; Gu, Y.; Haigis, S.; Alexander, D.; Pattathil, S.; Muñoz-Barrios, A.; Bednarek, P.; Somerville, S.; Schulze-Lefert, P.; Hahn, M.; Scheel, D.; Molina, A.: YODA MAP3K kinase regulates plant immune responses conferring broad-spectrum disease resistance. New Phytologist 218, pp. 661 - 680 (2018)
  19. Journal Article
    Sun, H.-Q.; Ding, J.; Piednoel, M.; Schneeberger, K.: findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies. Bioinformatics 34 (4), pp. 550 - 557 (2018)
  20. Journal Article
    Sun, H.-Q.; Rowan, B. A.; Flood, P. J.; Brandt, R.; Fuss, J.; Hancock, A. M.; Michelmore, R. W.; Huettel, B.; Schneeberger, K.: Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination. bioRxiv (2018)
  21. Journal Article
    Tsuda, K.: Division of Tasks: Defense by the Spatial Separation of Antagonistic Hormone Activities. Plant and Cell Physiology 59 (1), pp. 3 - 4 (2018)
  22. Journal Article
    Vuolo, F.; Kierzkowski, D.; Runions, A.; Hajheidari, M.; Mentink, R. A.; Das Gupta, M.; Zhang, Z.; Vlad, D.; Wang, Y.; Pecinka, A. et al.; Gan, X.; Hay, A.; Huijser, P.; Tsiantis, M.: LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes and Development 32, pp. 1361 - 1366 (2018)
  23. Journal Article
    Wang, Y.; Schuck, S.; Wu, J.; Yang, P.; Doering, A.-C.; Zeier, J.; Tsuda, K.: A MPK3/6-WRKY33-ALD1-Pipecolic Acid Regulatory Loop Contributes to Systemic Acquired Resistance. PLANT CELL 30 (10), pp. 2480 - 2494 (2018)
  24. Journal Article
    Wenzel, A.; Altmueller, J.; Ekici, A. B.; Popp, B.; Stueber, K.; Thiele, H.; Pannes, A.; Staubach, S.; Salido, E.; Nuernberg, P. et al.; Reinhardt, R.; Reis, A.; Rump, P.; Hanisch, F.-G.; Wolf, M. T. F.; Wiesener, M.; Huettel, B.; Beck, B. B.: Single molecule real time sequencing in ADTKD-MUC1 allows complete assembly of the VNTR and exact positioning of causative mutations. Scientific Reports 8 (2018)
  25. Journal Article
    Wibowo, A.; Becker, C.; Durr, J.; Price, J.; Spaepen, S.; Hilton, S.; Putra, H.; Papareddy, R.; Saintain, Q.; Harvey, S. et al.; Bending, G. D.; Schulze-Lefert, P.; Weigel, D.; Gutierrez-Marcos, J.: Partial maintenance of organ-specific epigenetic marks during plant asexual reproduction leads to heritable phenotypic variation. Proceedings of the National Academy of Sciences of the United States of America 115 (39), pp. E9145 - E9152 (2018)
  26. Journal Article
    Wozny, D.; Kramer, K.; Finkemeier, I.; Acosta, I.; Koornneef, M.: Genes for seed longevity in barley identified by genomic analysis on near isogenic lines. Plant, Cell and Environment 41 (8), pp. 1895 - 1911 (2018)
  27. Journal Article
    Xue, L.; Klinnawee, L.; Zhou, Y.; Saridis, G.; Vijayakumar, V.; Brands, M.; Doermann, P.; Gigolashvili, T.; Turck, F.; Bucher, M.: AP2 transcription factor CBX1 with a specific function in symbiotic exchange of nutrients in mycorrhizal Lotus japonicus. Proceedings of the National Academy of Sciences of the United States of America 115 (39), pp. E9239 - E9246 (2018)
  28. Journal Article
    Yokoo, S.; Inoue, S.; Suzuki, N.; Amakawa, N.; Matsui, H.; Nakagami, H.; Takahashi, A.; Arai, R.; Katou, S.: Comparative analysis of plant isochorismate synthases reveals structural mechanisms underlying their distinct biochemical properties. Bioscience Reports 38, BSR20171457 (2018)
  29. Journal Article
    Zhao, M.; Song, J.; Wu, A.; Hu, T.; Li, J.: Mining Beneficial Genes for Aluminum Tolerance Within a Core Collection of Rice Landraces Through Genome-Wide Association Mapping With High Density SNPs From Specific-Locus Amplified Fragment Sequencing. Frontiers in Plant Science 9 (2018)
  30. Journal Article
    Zhou, Y.; Wang, Y.; Krause, K.; Yang, T.; Dongus, J. A.; Zhang, Y.; Turck, F.: Telobox motifs recruit CLF/SWN-PRC2 for H3K27me3 deposition via TRB factors in Arabidopsis. Nature Genetics 50 (5), pp. 638 - 644 (2018)
  31. Journal Article
    Acevedo-Garcia, J.; Gruner, K.; Reinstaedler, A.; Kemen, A.; Kemen, E.; Cao, L.; Takken, F. L. W.; Reitz, M. U.; Schafer, P.; O'Connell, R. J. et al.; Kusch, S.; Kuhn, H.; Panstruga, R.: The powdery mildew-resistant Arabidopsis mlo2 mlo6 mlo12 triple mutant displays altered infection phenotypes with diverse types of phytopathogens. SCIENTIFIC REPORTS 7 (2017)
  32. Journal Article
    Adeyemo, S.; Chavarriaga, P.; Tohme, J.; Fregene, M.; Davis, S. J.; Setter, T. L.: Overexpression of Arabidopsis FLOWERING LOCUS T (FT) gene improves floral development in cassava (Manihot esculenta, Crantz). PLoS One 12 (7) (2017)
  33. Journal Article
    Almario, J.; Jeena, G.; Wunder, J.; Langen, G.; Zuccaro, A.; Coupland, G.; Bucher, M.: Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition. Proceedings of the National Academy of Sciences of the United States of America 114 (44), pp. E9403 - E9412 (2017)
  34. Journal Article
    Alvarez, M. F.; Angarita, M.; Delgado, M. C.; Garcia, C.; Jimenez-Gomez, J. M.; Gebhardt, C.; Mosquera, T.: Identification of Novel Associations of Candidate Genes with Resistance to Late Blight in Solanum tuberosum Group Phureja. Frontiers in Plant Science 8 (2017)
  35. Journal Article
    Ariga, H.; Katori, T.; Tsuchimatsu, T.; Hirase, T.; Tajima, Y.; Parker, J. E.; Alcázar, R.; Koornneef, M.; Hoekenga, O.; Lipka, A. E. et al.; Gore, M. A.; Sakakibara, H.; Kojima, M.; Kobayashi, Y.; Iuchi, S.; Kobayashi, M.; Shinozaki, K.; Sakata, Y.; Hayashi, T.; Saijo, Y.; Taji, T.: NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis. Nature Plants 3 (2017)
  36. Journal Article
    Balcke, G. U.; Bennewitz, S.; Bergau, N.; Athmer, B.; Henning, A.; Majovsky, P.; Jimenez-Gomez, J. M.; Hoehenwarter, W.; Tissier, A.: Multi-Omics of Tomato Glandular Trichomes Reveals Distinct Features of Central Carbon Metabolism Supporting High Productivity of Specialized Metabolites. Plant Cell 29 (5), pp. 960 - 983 (2017)
  37. Journal Article
    Berens, M.; Berry, H. M.; Mine, A.; Argueso, C. T.; Tsuda, K.: Evolution of Hormone Signaling Networks in Plant Defense. ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 55, pp. 401 - 425 (2017)
  38. Journal Article
    Birkenbihl, R.; Liu, S.; Somssich, I. E.: Transcriptional events defining plant immune responses. Current Opinion in Plant Biology 38 (SI: 38 Biotic Interactions 2017), pp. 1 - 9 (2017)
  39. Journal Article
    Birkenbihl, R.; Kracher, B.; Roccaro, M.; Somssich, I. E.: Induced genome-wide binding of three WRKY transcription factors during early MAMP-triggered immunity. The Plant Cell 29, 10.1105/tpc.16.00681, pp. 20 - 38 (2017)
  40. Journal Article
    Bowman, J. L.; Kohchi, T.; Yamato, K. T.; Jenkins, J.; Shu, S.; Ishizaki, K.; Yamaoka, S.; Nishihama, R.; Nakamura, Y.; Berger, F. et al.; Adam, C.; Aki, S. S.; Althoff, F.; Araki, T.; Arteaga-Vazquez, M. A.; Balasubrmanian, S.; Barry, K.; Bauer, D.; Boehm, C. R.; Briginshaw, L.; Caballero-Perez, J.; Catarino, B.; Chen, F.; Chiyoda, S.; Chovatia, M.; Davies, K. M.; Delmans, M.; Demura, T.; Dierschke, T.; Dolan, L.; Dorantes-Acosta, A. E.; Eklund, D. M.; Florent, S. N.; Flores-Sandoval, E.; Fujiyama, A.; Fukuzawa, H.; Galik, B.; Grimanelli, D.; Grimwood, J.; Grossniklaus, U.; Hamada, T.; Haseloff, J.; Hetherington, A. J.; Higo, A.; Hirakawa, Y.; Hundley, H. N.; Ikeda, Y.; Inoue, K.; Inoue, S.-I.; Ishida, S.; Jia, Q.; Kakita, M.; Kanazawa, T.; Kawai, Y.; Kawashima, T.; Kennedy, M.; Kinose, K.; Kinoshita, T.; Kohara, Y.; Koide, E.; Komatsu, K.; Kopischke, S.; Kubo, M.; Kyozuka, J.; Lagercrantz, U.; Lin, S.-S.; Lindquist, E.; Lipzen, A. M.; Lu, C.-W.; De Luna, E.; Martienssen, R.A.; Minamino, N.; Mizutani, M.; Mizutani, M.; Mochizuki, N.; Monte, I.; Mosher, R.; Nagasaki, H.; Nakagami, H.; Naramoto, S.; Nishitani, K.; Ohtani, M.; Okamoto, T.; Okumura, M.; Phillips, J.; Pollak, B.; Reinders, A.; Rovekamp, M.; Sano, R.; Sawa, S.; Schmid, M. W.; Shirakawa, M.; Solano, R.; Spunde, A.; Suetsugu, N.; Sugano, S.; Sugiyama, A.; Sun, R.; Suzuki, Y.; Takenaka, M.; Takezawa, D.; Tomogane, H.; Tsuzuki, M.; Ueda, T.; Umeda, M.; Ward, J. M.; Watanabe, Y.; Yazaki, K...; Yokoyama, R.; Yoshitake, Y.; Yotsui, I.; Zachgo, S.; Schmutz, J.: Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell 171 (2), pp. 287 - 304.e15 (2017)
  41. Journal Article
    Chandrasekar, B.; Tram Hong, N.; Van der Hoorn, R. A. L.: Inhibitor Discovery by Convolution ABPP. ACTIVITY-BASED PROTEOMICS: METHODS AND PROTOCOLS, pp. 47 - 56 (2017)
  42. Journal Article
    Chao, Y.; Li, L.; Girodat, D.; Foerstner, K. U.; Said, N.; Corcoran, C.; Smiga, M.; Papenfort, K.; Reinhardt, R.; Wieden, H.-J. et al.; Luisi, B. F.; Vogel, J.: In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways. Molecular Cell 65 (1), pp. 39 - 51 (2017)
  43. Journal Article
    Costa, M.-C. D.; Artur, M. A. S.; Maia, J.; Jonkheer, E.; Derks, M. F. L.; Nijveen, H.; Williams, B.; Mundree, S. G.; Jimenez-Gomez, J. M.; Hesselink, T. et al.; Schijlen, E. G. W. M.; Ligterink, W.; Oliver, M. J.; Farrant, J. M.; Hilhorst, H. W. M.: A footprint of desiccation tolerance in the genome of Xerophyiita viscosa. Nature Plants 3 (4) (2017)
  44. Journal Article
    Cui, H.; Gobbato, E.; Kracher, B.; Qiu, J.; Bautor, J.; Parker, J. E.: A core function of EDS1 with PAD4 is to protect the salicylic acid defense sector in Arabidopsis immunity. New Phytologist 213, 10.1111/nph.14302, pp. 1802 - 1817 (2017)
  45. Journal Article
    de Montaigu, A.; Oeljeklaus, J.; Krahn, J. H.; Suliman, M. N. S.; Halder, V.; De Ansorena, E.; Nickel, S.; Schlich, M.; Plihal, O.; Kubiasová, K. et al.; Radova, L.; Kracher, B.; Tóth, R.; Kaschani, F.; Coupland, G.; Kombrink, E.; Kaiser, M.: The Root Growth-Regulating Brevicompanine Natural Products Modulate the Plant Circadian Clock. ACS Chemical Biology 12 (6), pp. 1466 - 1471 (2017)
  46. Journal Article
    de Montaigu, A.; Coupland, G.: The timing of GIGANTEA expression during day/ night cycles varies with the geographical origin of Arabidopsis. Plant Signaling & Behavior 12 (7) (2017)
  47. Journal Article
    de Simone, A.; Hubbard, R.; Vinegra de la Torre, N.; Velappan, Y.; Wilson, M.; Considine, M. J.; Soppe, W. J. J.; Foyer, C. H.: Redox Changes During the Cell Cycle in the Embryonic Root Meristem of Arabidopsis thaliana. ANTIOXIDANTS & REDOX SIGNALING 27 (18), pp. 1505 - 1519 (2017)
  48. Journal Article
    Diaz, M.; Pecinka, A.: Seeds as Emerging Hotspot for Maintenance of Genome Stability. CYTOLOGIA 82 (5), pp. 467 - 470 (2017)
  49. Journal Article
    Dombrowski, N.; Schlaeppi, K.; Agler, M.T.; Hacquard, S.; Kemen, E.; Garrido Oter, R.; Wunder, J.; Coupland, G.; Schulze-Lefert, P.: Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time. The ISME Journal 11, 10.1038/ismej.2016.109, pp. 43 - 55 (2017)
  50. Journal Article
    Donnart, T.; Piednoel, M.; Higuet, D.; Bonnivard, E.: Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi. BMC Genomics 18 (2017)
 
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