Scientific Publications since 2002

Max Planck Institute for Plant Breeding Research

Journal Article (2416)

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Romeiro Motta, M.; Nédélec, F.; Saville, H.; Woelken, E.; Jacquerie, C.; Pastuglia, M.; Stolze, S. C.; Van De Slijke, E.; Böttger, L.; Belcram, K. et al.; Nakagami, H.; De Jaeger, G.; Bouchez, D.; Schnittger, A.: The cell cycle controls spindle architecture in Arabidopsis by activating the augmin pathway. Developmental Cell 59, pp. 1 - 15 (2024)

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Sajeev, N.; Koornneef, M.; Bentsink, L.: A commitment for life: Decades of unraveling the molecular mechanisms behind seed dormancy and germination. The Plant Cell, koad328, pp. 1 - 19 (2024)

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Schmitz, G.; Linstaedter, A.; Frank, A.S. K.; Dittberner, H.; Thome, J.; Schrader, A.; Linne von Berg, K.-H.; Fulgione, A.; Coupland, G.; de Meaux, J.: Environmental filtering of life-history trait diversity in urban populations of Arabidopsis thaliana. Journal of Ecology 112 (1), pp. 14 - 27 (2024)

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Seah, B. K. B.; Singh, A.; Vetter, D. E.; Emmerich, C.; Peters, M.; Soltys, V.; Huettel, B.; Swart, E. C.: Nuclear dualism without extensive DNA elimination in the ciliate Loxodes magnus. Proceedings of the National Academy of Sciences of the United States of America 121 (39), e566212 (2024)

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Shen, D.; Wippel, K.; Remmel, S.; Zhang, Y.; Kuertoes, N.; Neumann, U.; Kopriva, S.; Andersen, T. G.: The Arabidopsis SGN3/GSO1 receptor kinase integrates soil nitrogen status into shoot development. The EMBO Journal 43, pp. 2486 - 2505 (2024)

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Shen, Q.; Hasegawa, K.; Oelerich, N.; Prakken, A.; Tersch, L. W.; Wang, J.; Reichhardt, F.; Tersch, A.; Choo, J. C.; Timmers, T. et al.; Hofmann, K.; Parker, J. E.; Chai, J.; Maekawa, T.: Cytoplasmic calcium influx mediated by plant MLKLs confers TNL-triggered immunity. Cell Host & Microbe 32, pp. P453 - 465.e6 (2024)

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Somssich, M.: From the archives: male-female communication, glue that keeps cells together, and a SUPERMAN for all flowering plants. The Plant Cell, pp. 795 - 796 (2024)

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Song, W.; Liu, L.; Yu, D.; Bernardy, H.; Jirschitzka, J.; Huang, S.; Jia, A.; Jemielniak, W.; Acker, J.; Laessle, H. et al.; Wang, J.; Shen, Q.-H.; Chen, W.; Li, P.; Parker, J. E.; Han, Z.; Schulze-Lefert, P.; Chai, J., J.: Substrate-induced condensation activates plant TIR domain proteins. Nature 627 (8005), pp. 847 - 853 (2024)

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Souza, T. B.; Parteka, L. M.; Kuo, Y. T.; Nascimento, T. H. D.; Schubert, V.; Pedrosa-Harand, A.; Marques, A.; Houben, A.; Vanzela, A. L. S.: Distinct patterns of satDNA distribution in holocentric chromosomes of spike-sedges. Genome (2024)

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Sun, H.-Q.; Abeli, P.; Campoy, J. A.; Ruetjes, T.; Krause, K.; Jiao, W.-B.; Beaudry, R.; Schneeberger, K.: The identification and analysis of meristematic mutations within the apple tree that developed the RubyMac sport mutation. BMC Plant Biology 24 (1), 912 (2024)

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Tjeng, B.; Arimon, M.; Grindeland, H. B.; Dalla Libera, A.; Fulgione, A.: ParaMask, a new method to identify multicopy genomic regions, corrects major biases in whole-genome sequencing data. PREPRINT available. Research Square (2024)

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Valasiadis, D.; Kollaros, M. G.; Michailidis, M.; Polychroniadou, C.; Tanou, G.; Bazakos, C.; Molassiotis, A.: Wide-characterization of high and low dry matter kiwifruit through spatiotemporal multi-omic approach. Postharvest Biology and Technology 209, 112727 (2024)

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van Boerdonk, S.; Saake, P.; Wanke, A.; Neumann, U.; Zuccaro, A.: b-Glucan-binding proteins are key modulators of immunity and symbiosis in mutualistic plant-microbe interactions. Current Opinion in Plant Biology 81, 102610 (2024)

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Vijayan, A.; Mody, T. A.; Yu, Q.; Wolny, A.; Cerrone, L.; Strauss, S.; Tsiantis, M.; Smith, R. S.; Hamprecht, F. A.; Kreshuk, A. et al.; Schneitz, K.: A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context. Development 151 (14), dev202800 (2024)

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Wang, D.; Wei, L.; Ma, J.; Wan, Y.; Huang, K.; Sun, Y.; Wen, H.; Chen, Z.; Li, Z.; Yu, D. et al.; Cui, H.; Wu, J.; Wu, Y.; Kim, S. T.; Zhao, J.; Parker, J.; Tsuda, K.; Jiang, C.; Wang, Y.: Bacillus cereus NJ01 induces SA- and ABA-mediated immunity against bacterial pathogens through the EDS1-WRKY18 module. Cell Reports 43 (4), 113985 (2024)

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Wang, X.; Yu, D.; Yu, J.; Hu, H.; Hang, R.; Amador, Z.; Chen, Q.; Chai, J.; Chen, X.: Toll/interleukin-1 receptor (TIR) domain-containing proteins have NAD-RNA decapping activity. Nature Communications 15 (1), 2261 (2024)

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Wang, Y.; Fuentes, R. R.; van Rengs, W. M. J.; Effgen, S.; Zaidan, M. W. A.; Franzen, R.; Susanto, T.; Fernandes, J. B.; Mercier, R.; Underwood, C. J.: Harnessing clonal gametes in hybrid crops to engineer polyploid genomes. Nature Genetics 56, pp. 1075 - 1079 (2024)

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Watson, A. E.; Guitton, B.; Soriano, A.; Rivallan, R.; Vignes, H.; Farrera, I.; Huettel, B.; Arnaiz, C.; Falavigna, V.; Coupel-Ledru, A. et al.; Segura, V.; Sarah, G.; Dufayard, J.-F.; Sidibe-Bocs, S.; Costes, E.; Andres, F.: Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple. Frontiers in Plant Science 15, 1352757 (2024)

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Wu, Y.; Xu, W.; Zhao, G.; Lei, Z.; Li, K.; Liu, J.; Huang, S.; Wang, J.; Zhong, X.; Yi X., n. et al.; Wang, Y.; Zhang, H.; He, Y.; Ye, Z.; Meng, Y.; Chang, X.; Lin, H.; Wang, X.; Gao, Y.; Chai, J.; Parker, J. E.; Deng, Y.; Zhang, Y.; Gao, M.; He, Z.: The rice ROD1-TIR-EDS1-PAD4-ADR1 module controls immune homeostasis and multipathogen resistance. Science, eadr2138 (2024)

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Xuan, Y. H.; Wang, Y.; Gao, L.; Gan, X.: Editorial: Novel insights into the regulatory role of sugar and amino acids signaling in plant-microbe interactions. Frontiers in Plant Science 14, 1261186 (2024)

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Zainu, A.; Dupaigne, P.; Bouchouika, S.; Cau, J.; Clement, J. A. J.; Auffret, P.; Ropars, V.; Charbonnier, J.-B.; de Massy, B.; Mercier, R. et al.; Kumar, R.; Baudat, F.: FIGNL1-FIRRM is essential for meiotic recombination and prevents DNA damage-independent RAD51 and DMC1 loading. Nature Communications 15 (1), 7015 (2024)

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Zhang, M.; Marques, A.: How plants with hundreds of centromeres crossover. Nature Plants 10 (3), pp. 354 - 355 (2024)

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Ai, H.; Bellstaedt, J.; Bartusch, K. S.; Eschen-Lippold, L.; Babben, S.; Balcke, G. U.; Tissier, A.; Hause, B.; Andersen, T. G.; Delker, C. et al.; Quint, M.: Auxin-dependent regulation of cell division rates governs root thermomorphogenesis. The EMBO Journal 42 (11), e111926 (2023)

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Andersen, T. G.; Vermeer, J. E. M.: Bacterial gas-lighting of lateral root formation. PNAS 120 (17), e2303919120 (2023)

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Arlt, C.; Wachtmeister, T.; Koehrer, K.; Stich, B.: Affordable, accurate and unbiased RNA sequencing by manual library miniaturization: A case study in barley. Plant Biotechnology Journal 21 (11), pp. 2241 - 2253 (2023)

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Awad, M.; Gan, X.: GALA: a computational framework for de novo chromosome-by chromosome assembly with long reads. Nature Communications 14, 204 (2023)

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Baumgarten, L.; Pieper, B.; Song, B.; Mane, S.; Lempe, J.; Lamb, J.; Cooke, E. L.; Srivastava, R.; Struett, S.; Zanko, D. et al.; Casimiro, P. G. P.; Hallab, A.; Cartolano, M.; Tattersall, A. D.; Huettel, B.; Filatov, D. A.; Pavlidis, P.; Neuffer, B.; Bazakos, C.; Schaefer, H.; Mott, R.; Gan, X.; Alonso-Blanco, C.; Laurent, S.; Tsiantis, M.: Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns. PLoS Biology 21 (7), e3002191 (2023)

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Bhatia, N.; Wilson-Sanchez, D.; Strauss, S.; Vuolo, F.; Pieper, B.; Hu, Z.; Rambaud-Lavigne, L.; Tsiantis, M.: Interspersed expression of CUP-SHAPED COTYLEDON2 and REDUCED COMPLEXITY shapes Cardamine hirsuta complex leaf form. Current Biology (2023)

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Bock, D. G.; Liu, J.; Novikova, P. Y.; Rieseberg, L. H.: Long-read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity. Molecular Ecology 32, pp. 1229 - 1235 (2023)

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Brazel, A. J.; Fattorini, R.; McCarthy, J.; Franzen, R.; Rümpler, F.; Coupland, G.; O'Maoiléidigh, D. S.: AGAMOUS mediates timing of guard cell formation during gynoecium development. PLOS Genetics 19 (10), e1011000 (2023)

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Campos Martin, R.; Schmickler, S.; Goel, M.; Schneeberger, K.; Tresch, A.: Reliable genotyping of recombinant genomes using a robust hidden Markov model. Plant Physiology 192 (2), pp. 821 - 836 (2023)

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Cao, Y.; Kümmel, F.; Logemann, E.; Gebauer, J. M.; Lawson, A. W.; Yu, D.; Uthoff, M.; Keller, B.; Jirschitzka, J.; Baumann, U. et al.; Tsuda, K.; Chai, J.; Schulze-Lefert, P.: Structural polymorphisms within a common powdery mildew effector scaffold as a driver of coevolution with cereal immune receptors. Proceedings of the National Academy of Sciences of the United States of America 120 (32), e2307604120 (2023)

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Castro, N.; Mata-Sucre, Y.; Carvalho-Sobrinho, J.; Marques, A.; de Queiroz, R. T.; Souza, G.: Genomic stability in Cenostigma Tul., (Caesalpinioideae, Fabaceae): causes and consequences. Botanical Journal of the Linnean Society, boad043 (2023)

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Cerise, M.; da Silveira Falavigna, V.; Rodriguez Maroto, G.; Signol, A.; Severing, E.; Gao, H.; van Driel, A.; Vincent, C.; Wilkens, S.; Iacobini, F. et al.; Formosa-Jordan, P.; Pajoro, A.; Coupland, G.: Two modes of gene regulation by TFL1 mediate its dual function in flowering time and shoot determinacy of Arabidopsis. Development 150 (23), dev202089 (2023)

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Chai, J.; Song, W.; Parker, J. E.: New Biochemical Principles for NLR Immunity in Plants. Molecular Plant-Microbe Interactions 36 (8), pp. 468 - 475 (2023)

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Costa, L.; Marques, A.; Buddenhagen, C. E.; Pedrosa-Harand, A.; Souza, G.: Investigating the diversification of holocentromeric satellite DNA Tyba in Rhynchospora (Cyperaceae). Annals of Botany 131 (5), pp. 813 - 825 (2023)

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Crean, E. E.; Bilstein-Schloemer, M.; Maekawa, T.; Schulze-Lefert, P.; Saur, I. M. L.: A dominant-negative avirulence effector 1 of the barley powdery mildew fungus provides mechanistic insight to barley MLA immune receptor activation. Journal of Experimental Botany 74 (18), pp. 5854 - 5869 (2023)

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Cullen, E.; Wang, Q.; Glover, B. J.: How do you build a nectar spur? A transcriptomic comparison of nectar spur development in Linaria vulgaris and gibba development in Antirrhinum majus. Frontiers in Plant Science 14, 1190373 (2023)

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de Jager, N.; Shukla, V.; Koprivova, A.; Lyčka, M.; Bilalli, L.; You, Y.; Zeier, J.; Kopriva, S.; Ristova, D.: Traits linked to natural variation of sulfur content in A. thaliana leaf. Journal of Experimental Botany, erad401 (2023)

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Elfarargi, A. F.; Gilbault, E.; Doering, N.; Neto, C.; Fulgione, A.; Weber, A. P. M.; Loudet, O.; Hancock, A. M.: Genomic Basis of Adaptation to a Novel Precipitation Regime. Molecular Biology and Evolution 40 (3), msad031 (2023)

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Escobar-Nino, A.; Harzen, A.; Stolze, S. C.; Nakagami, H.; Fernandez-Acero, F. J.: The Adaptation of Botrytis cinerea Extracellular Vesicles Proteome to Surrounding Conditions: Revealing New Tools for Its Infection Process. Journal of Fungi 9 (9), 872 (2023)

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Escudero, M.; Marques, A.; Lucek, K.; Hipp, A. L. L.: Genomic hotspots of chromosome rearrangements explain conserved synteny despite high rates of chromosome evolution in a holocentric lineage. Molecular Ecology (2023)

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Feehan, J. M.; Wang, J.; Sun, X.; Choi, J.; Ahn, H. K.; Ngou, B. P.; Parker, J. E.; Jones, J. D.: Oligomerization of a plant helper NLR requires cell-surface and intracellular immune receptor activation. Proceedings of the National Academy of Sciences of the United States of America 120 (11), e2210406120 (2023)

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Foerderer, A.; Chai, J.: Die another day: phytosulfokine at the molecular trade-off between growth and defense in plants. The EMBO Journal 42 (6), e113540 (2023)

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Formosa-Jordan, P.; Holloway, D. M.; Diambra, L.: Editorial: Pattern formation in biology. Frontiers in Physics 11, 1161890 (2023)

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Frommer, B.; Muellner, S.; Holtgraewe, D.; Viehoever, P.; Huettel, B.; Toepfer, R.; Weisshaar, B.; Zyprian, E.: Phased grapevine genome sequence of an Rpv12 carrier for biotechnological exploration of resistance to Plasmopara viticola. Frontiers in Plant Science 14, 1180982 (2023)

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Gebhardt, C.: A physical map of traits of agronomic importance based on potato and tomato genome sequences. Frontiers in Genetics 14, 1197206 (2023)

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Getzke, F.; Hassani, M. A.; Crüsemann, M.; Malisic, M.; Zhang, P.; Ishigaki, Y.; Böhringer, N.; Jiménez Fernández, A.; Wang, L.; Ordon, J. et al.; Ma, K.-W.; Thiergart, T.; Harbort, C. J.; Wesseler, H.; Miyauchi, S.; Garrido-Oter, R.; Shirasu, K.; Schäberle, T.F.; Hacquard, S.; Schulze-Lefert, P.: Co-functioning of bacterial exometabolites drives root microbiota establishment. Proceedings of the National Academy of Sciences of the United States of America 120 (15), e2221508120 (2023)

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Giaume, F.; Bono, G. A.; Martignago, D.; Miao, Y.; Vicentini, G.; Toriba, T.; Wang, R.; Kong, D.; Cerise, M.; Chirivi, D. et al.; Biancucci, M.; Khahani, B.; Morandini, P.; Tameling, W.; Martinotti, M.; Goretti, D.; Coupland, G.; Kater, M.; Brambilla, V.; Miki, D.; Kyozuka, J.; Fornara, F.: Two florigens and a florigen-like protein form a triple regulatory module at the shoot apical meristem to promote reproductive transitions in rice. Nature Plants 9 (4), pp. 525 - 534 (2023)

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Girard, C.; Zwicker, D.; Mercier, R.: The regulation of meiotic crossover distribution: a coarse solution to a century-old mystery? Biochemical Society Transactions 28 (51), pp. 1179 - 1190 (2023)

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