Scientific Publications since 2002

Journal Article

de Souza, F. D.; Marques, A.; Almeida, C.: Mitochondrial genome of Hancornia speciosa gomes: intergenic regions containing retrotransposons and predicted genes. Molecular Biology Reports 51 (1), 132 (2024)

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Del Toro-De León, G.; van Boven, J.; Santos-González, J.; Jiao, W.-B.; Peng, H.; Schneeberger, K.; Köhler, C.: Epigenetic and transcriptional consequences in the endosperm of chemically induced transposon mobilization in Arabidopsis. Nucleic Acids Research 53 (15), pp. 8833 - 8848 (2024)

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Dias, Y.; Mata Sucre, Y.; Thangavel, G.; Costa, L.; Báez, M.; Houben, A.; Marques, A.; Pedrosa-Harand, A.: How diverse a monocentric chromosome can be? Repeatome and centromeric organization of Juncus effusus (Juncaceae). The Plant Journal (2024)

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Emmenecker, C.; Pakzad, S.; Ture, F.; Guerin, J.; Hurel, A.; Chambon, A.; Girard, C.; Mercier, R.; Kumar, R.: FIGL1 attenuates meiotic interhomolog repair and is counteracted by the RAD51 paralog XRCC2 and the chromosome axis protein ASY1 during meiosis. New Phytologist 244 (6), pp. 2442 - 2457 (2024)

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Emonet, A.; Hay, A.: Explosive seed dispersal. Current Biology 34, pp. R970 - R972 (2024)

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Emonet, A.; Pérez Antón, M.; Neumann, U.; Dunemann, S.; Huettel, B.; Koller, R.; Hay, A.: Amphicarpic development in the emerging model organism Cardamine chenopodiifolia. New Phytologist 244, pp. 1041 - 1056 (2024)

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Entila, F.; Han, X.; Mine, A.; Schulze-Lefert, P.; Tsuda, K.: Commensal lifestyle regulated by a negative feedback loop between Arabidopsis ROS and the bacterial T2SS. Nature Communications 15 (1), 456 (2024)

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Entila, F.; Tsuda, K.: Taming of the microbial beasts: Plant immunity tethers potentially pathogenic microbiota members. Bioessays, 2400171 (2024)

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Ernst, M.; Mercier, R.; Zwicker, D.: Interference length reveals regularity of crossover placement across species. Nature Communications 15, 8973 (2024)

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Fernandes, J. B.; Naish, M.; Lian, Q.; Burns, R.; Tock, A. J.; Rabanal, F. A.; Wlodzimierz, P.; Habring, A.; Nicholas, R. E.; Weigel, D. et al.; Mercier, R.; Henderson, I. R.: Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis. Genome Biology 25 (1), 30 (2024)

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Freh, M.; Reinstaedler, A.; Neumann, K. D.; Neumann, U.; Panstruga, R.: The development of pleiotropic phenotypes in powdery mildew-resistant barley and Arabidopsis thaliana mlo mutants is linked to nitrogen availability. Plant, Cell and Environment 47 (7), pp. 2362 - 2376 (2024)

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Fuster-Pons, A.; Murillo-Sanchez, A.; Mendez-Vigo, B.; Marcer, A.; Pieper, B.; Torres-Perez, R.; Oliveros, J. C.; Tsiantis, M.; Pico, F. X.; Alonso-Blanco, C.: The trichome pattern diversity of Cardamine shares genetic mechanisms with Arabidopsis but differs in environmental drivers. Plant Physiology, kiae213 (2024)

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Getzke, F.; Wang, L.; Chesneau, G.; Böhringer, N.; Mesny, F.; Denissen, N.; Wesseler, H.; Adisa, P. T.; Marner, M.; Schulze-Lefert, P. et al.; Schäberle, T. F.; Hacquard, S.: Physiochemical interaction between osmotic stress and a bacterial exometabolite promotes plant disease. Nature Communications 15, 4438 (2024)

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Goel, M.; Campoy, J. A.; Krause, K.; Baus, L. C.; Sahu, A.; Sun, H.-Q.; Walkemeier, B.; Marek, M.; Beaudry, R.; Ruiz, D., D. et al.; Huettel, B.; Schneeberger, K.: The vast majority of somatic mutations in plants are layer-specific. Genome Biology: Biology for the Post-Genomic Era 25 (1), 194 (2024)

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Goto, Y.; Kadota, Y.; Mbengue, M.; Lewis, J.D.; Matsui, H.; Maki, N.; Ngou, B.P.M.; Sklenar, J.; Derbyshire, P.; Shibata, A. et al.; Ichihashi, Y.; Guttman, D.S.; Nakagami, H.; Suzuki, T.; Menke, F.L.H.; Robatzek, S.; Desveaux, D.; Zipfel, C.; Shirasu, K.: The leucine-rich repeat receptor kinase QSK1 regulates PRR–RBOHD complexes targeted by the bacterial effector HopF2Pto. The Plant Cell, koae267 (2024)

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Grones, C.; Eekhout, T.; Shi, D.; Neumann, M.; Berg, L. S.; Ke, Y.; Shahan, R.; Cox, K. L.; Gomez-Cano, F.; Nelissen, H. et al.; Lohmann, J. U.; Giacomello, S.; Martin, O. C.; Cole, B.; Wang, J.-W.; Kaufmann, K.; Raissig, M. T.; Palfalvi, G.; Greb, T.; Libault, M.; De Rybel, B.: Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics. The Plant Cell, koae003, pp. 1 - 17 (2024)

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Hacquard, S.; Martin, F. M.: The chemical language of plant-microbe-microbe associations: an introduction to a Virtual Issue. New Phytologist 244 (3), pp. 739 - 742 (2024)

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Hasegawa, K.; Timmers, T.; Chai, J.; Maekawa, T.: A disease resistance assay in Nicotiana benthamiana reveals the immune function of Response to HopBA1. Plant Physiology, kiae368 (2024)

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Hu, Z.; Wilson Sánchez, D.; Bhatia, N.; Rast, M. I.; Wu, A.; Vlad, D.; McGuire, L.; Nikolov, L. A.; Laufs, P.; Gan, X. et al.; Laurent, S.; Runions, A.; Tsiantis, M.: A CUC1/auxin genetic module links cell polarity to patterned tissue growth and leaf shape diversity in crucifer plants. PNAS 121 (26), e2321877121 (2024)

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Huang, L.; Oekmen, B.; Stolze, S. C.; Kastl, M.; Khan, M.; Hilbig, D.; Nakagami, H.; Djamei, A.; Doehlemann, G.: The fungal pathogen Ustilago maydis targets the maize corepressor RELK2 to modulate host transcription for tumorigenesis. New Phytologist 241 (4), pp. 1747 - 1762 (2024)

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Islam, S.; Peart, C.; Kehlmaier, C.; Sun, Y.-H.; Lei, F.; Dahl, A.; Klemroth, S.; Alexopoulou, D.; Delgado, M.d. M.; Laiolo, P. et al.; Illera, J. C.; Dirren, S.; Hille, S.; Lkhagvasuren, D.; Toepfer, T.; Kaiser, M.; Gebauer, A.; Martens, J.; Paetzold, C.; Paeckert, M.: Museomics help resolving the phylogeny of snowfinches (Aves, Passeridae, Montifringilla and allies). Molecular Phylogenetics and Evolution 198, 108135 (2024)

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Ivanković, M.; Brand, J. N.; Pandolfini, L.; Brown, T.; Pippel, M.; Rozanski, A.; Schubert, T.; Grohme, M. A.; Winkler, S.; Robledillo, L. et al.; Zhang, M.; Codino, A.; Gustincich, S.; Vila-Farré, M.; Zhang, S.; Papantonis, A.; Marques, A.; Rink, J. C.: A comparative analysis of planarian genomes reveals regulatory conservation in the face of rapid structural divergence. Nature Communications 15, 8215 (2024)

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Jeon, H.-W.; Iwakawa, H.; Naramoto, S.; Herrfurth, C.; Gutsche, N.; Schluter, T.; Kyozuka, J.; Miyauchi, S.; Feussner, I.; Zachgo, S. et al.; Nakagami, H.: Contrasting and conserved roles of NPR pathways in diverged land plant lineages. New Phytologist 243 (6), pp. 2295 - 2310 (2024)

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Kim, H.; Kim, J.; Son, N.; Kuo, P.; Morgan, C.; Chambon, A.; Byun, D.; Park, J.; Lee, Y.; Park, Y. M. et al.; Fozard, J. A.; Guérin, J.; Hurel, A.; Lambing, C.; Howard, M.; Hwang, I.; Mercier, R.; Grelon, M.; Henderson, I. R.; Choi, K.: Control of meiotic crossover interference by a proteolytic chaperone network. Nature Plants 10, pp. 453 - 468 (2024)

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Klug, K.; Zhu, P.; Pattar, P.; Mueller, T.; Safari, N.; Sommer, F.; Valero-Jimenez, C. A.; van Kan, J. A. L.; Huettel, B.; Stueber, K. et al.; Scheuring, D.; Schroda, M.; Hahn, M.: Genome Comparisons between Botrytis fabae and the Closely Related Gray Mold Fungus Botrytis cinerea Reveal Possible Explanations for Their Contrasting Host Ranges. Journal of Fungi 10 (3), 216 (2024)

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Kuo, Y.-T.; Kurian, J. G.; Schubert, V.; Fuchs, J.; Melzer, M.; Muraleedharan, A.; Maruthachalam, R.; Houben, A.: The holocentricity in the dioecious nutmeg Myristica fragrans is not based on major satellite repeats. Chromosome Research 32 (2), 8 (2024)

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Kuo, Y.-T.; Schubert, V.; Marques, A.; Schubert, I.; Houben, A.: Centromere diversity: How different repeat-based holocentromeres may have evolved. Bioessays 46 (6), e2400013 (2024)

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Li, X.-M.; Jenke, H.; Strauss, S.; Bazakos, C.; Mosca, G.; Lymbouridou, R.; Kierzkowski, D.; Neumann, U.; Naik, P.; Huijser, P. et al.; Laurent, S.; Smith, R. S.; Runions, A.; Tsiantis, M.: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis. Current Biology 34, pp. 541 - 556.e515 (2024)

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Li, X.-M.; Jenke, H.; Strauß, S.; Wang, Y.; Bhatia, N.; Kierzkowski, D.; Lymbouridou, R.; Huijser, P.; Smith, R. S.; Runions, A. et al.; Tsiantis, M.: Age-associated growth control modifies leaf proximodistal symmetry and enabled leaf shape diversification. Current Biology 34 (19), pp. 4547 - 4558.e9 (2024)

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Lian, Q.; Huettel, B.; Walkemeier, B.; Mayjonade, B.; Lopez-Roques, C.; Gil, L.; Roux, F.; Schneeberger, K.; Mercier, R.: A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range. Nature Genetics 56, pp. 982 - 991 (2024)

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Lian, Q.; Mercier, R.: Constants and variations in 69 diverse genomes of Arabidopsis thaliana. Nature Genetics 56 (5), pp. 748 - 749 (2024)

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Liu, Y.; Esposto, D.; Mahdi, L.; Porzel, A.; Stark, P.; Hussain, H.; Scherr-Henning, A.; Isfort, S.; Bathe, U.; Acosta, I. et al.; Zuccaro, A.; Balcke, G. U.; Tissier, A.: Hordedane diterpenoid phytoalexins restrict Fusarium graminearum infection but enhance Bipolaris sorokiniana colonization of barley roots. Molecular Plant 17 (8), pp. 1307 - 1327 (2024)

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Locci, F.; Parker, J. E.: Plant NLR immunity activation and execution: a biochemical perspective. Open Biology 14 (1), 230387 (2024)

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Loo, E. P. I.; Durán, P.; Pang, T. Y.; Westhoff, P.; Deng, C.; Durán, C.; Lercher, M.; Garrido Oter, R.; Frommer, W. B.: Sugar transporters spatially organize microbiota colonization along the longitudinal root axis of Arabidopsis. Cell Host & Microbe 32 (4), pp. 543 - 556.e6 (2024)

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Lopes, F. L.; Formosa-Jordan, P.; Malivert, A.; Margalha, L.; Confraria, A.; Feil, R.; Lunn, J. E.; Jönsson, H.; Landrein, B.; Baena-González, E.: Sugar signaling modulates SHOOT MERISTEMLESS expression and meristem function in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 121 (37), e2408699121 (2024)

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López, H.; Mercier, R.: Meiosis: The silk moth and the elephant. Current Biology 34 (11), pp. R211 - R213 (2024)

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Ma, S.; An, C.; Lawson, A. W.; Cao, Y.; Sun, Y.; Tan, E. Y. J.; Pan, J.; Jirschitzka, J.; Kümmel, F.; Mukhi, N. et al.; Han, Z.; Feng, S.; Wu, B.; Schulze-Lefert, P.; Chai, J.: Oligomerization-mediated autoinhibition and cofactor binding of a plant NLR. Nature 632, pp. 869 - 876 (2024)

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Ma, X.; Vanneste, S.; Chang, J.; Ambrosino, L.; Barry, K.; Bayer, T.; Bobrov, A. A.; Boston, L. B.; Campbell, J. E.; Chen, H. et al.; Chiusano, M. L.; Dattolo, E.; Grimwood, J.; He, G.; Jenkins, J.; Khachaturyan, M.; Marin-Guirao, L.; Mesterhazy, A.; Muhd, D.-D.; Pazzaglia, J.; Plott, C.; Rajasekar, S.; Rombauts, S.; Ruocco, M.; Scott, A. D.; Tan, M. P.; Van de Velde, J. D.; Vanholme, B.; Webber, J.; Wong, L. L.; Yan, M.; Sung, Y. Y.; Novikova, P. Y.; Schmutz, J.; Reusch, T. B. H.; Procaccini, G.; Olsen, J. L.; Van de Peer, Y.: Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature Plants 10, pp. 240 - 255 (2024)

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Manosalva Perez, N.; Ferrari, C.; Engelhorn, J.; Depuydt, T.; Nelissen, H.; Hartwig, T.; Vandepoele, K.: MINI-AC: inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles. The Plant Journal 117 (1), pp. 280 - 301 (2024)

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Mata Sucre, Y.; Krátká, M.; Oliveira, L.; Neumann, P.; Macas, J.; Schubert, V.; Huettel, B.; Kejnovsky, E.; Houben , A.; Pedrosa-Harand , A. et al.; Souza, G.; Marques, A.: Repeat-based holocentromeres of the woodrush Luzula sylvatica reveal new insights into the evolutionary transition from mono- to holocentricity. Nature Communications 15, 9565 (2024)

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Mata Sucre, Y.; Parteka, L. M.; Ritz, C. M.; Gatica-Arias, A.; Félix, L. P.; Thomas, W. W.; Souza, G.; Vanzela, A. .. L.; Pedrosa-Harand, A.; Marques, A.: Oligo-barcode illuminates holocentric karyotype evolution in Rhynchospora (Cyperaceae). Frontiers in Plant Science 7 (15), 1330927 (2024)

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Mishra, P.; Roggen, A.; Ljung, K.; Albani, M.; Vayssières, A.: Adventitious rooting in response to long-term cold: a possible mechanism of clonal growth in alpine perennials. Frontiers in Plant Science 15, 1352830 (2024)

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Mosca, G.; Eng, R. C.; Adibi, M.; Yoshida, S.; Lane, B.; Bergheim, L.; Weber, G.; Smith, R. S.; Hay, A.: Growth and tension in explosive fruit. Current Biology 34, pp. 1010 - 1022.e4 (2024)

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Northen, T. R.; Kleiner, M.; Torres, M.; Kovacs, A. T.; Nicolaisen, M. H.; Krzyzanowska, D. M.; Sharma, S.; Lund, G.; Jelsbak, L.; Baars, O. et al.; Kindtler, N. L.; Wippel, K.; Dinesen, C.; Ferrarezi, J. A.; Marian, M.; Pioppi, A.; Xu, X.; Andersen, T. G.; Geldner, N.; Schulze-Lefert, P.; Vorholt, J. A.; Garrido-Oter, R.: Community standards and future opportunities for synthetic communities in plant-microbiota research. Nature Microbiology 9 (11), pp. 2774 - 2784 (2024)

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Ntoanidou, S.; Kaplani, A.; Paloukopoulou, C.; Bazakos, C.; Patelou, E.; Doukidou, L.; Kotoula, A.-A.; Gklavakis, E.; Hatzilazarou, S.; Karioti, A. et al.; Nianiou-Obeidat, E.; Kostas, S.; Kanellis, A. K.: Identification of high carnosic acid rosemary (Salvia rosmarinus Spenn.) genotypes through genetic diversity exploitation, chemical profiling, and transcriptomic approaches. Industrial Crops and Products 214, 118562 (2024)

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Oliveira, L.; Neumann, P.; Mata Sucre, Y.; Kuo, Y.-T.; Marques, A.; Schubert, V.; Macas, J.: KNL1 and NDC80 represent new universal markers for the detection of functional centromeres in plants. Chromosome Research 32 (1), 3 (2024)

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Ordon, J.; Thouin, J.; Nakano, R. T.; Ma, K.-W.; Zhang, P.; Huettel, B.; Garrido Oter, R.; Schulze-Lefert, P.: Chromosomal barcodes for simultaneous tracking of near-isogenic bacterial strains in plant microbiota. Nature Microbiology (2024)

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Peckham, M.; Neumann, U.; Culley, S.: Introduction to women in microscopy: Volume 2. Special Issue 295 (1), pp. 3 - 5 (2024)

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Phookaew, P.; Ma, Y.; Suzuki, T.; Stolze, S. C.; Harzen, A.; Sano, R.; Nakagami, H.; Demura, T.; Ohtani, M.: Active protein ubiquitination regulates xylem vessel functionality. The Plant Cell 36 (9), pp. 3298 - 3317 (2024)

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Regmi, K. C.; Ghosh, S.; Koch, B.; Neumann, U.; Stein, B.; O'Connell, R. J.; Innes, R. W.: Three-Dimensional Ultrastructure of Arabidopsis Cotyledons Infected with Colletotrichum higginsianum. Molecular Plant-Microbe Interactions 37 (4), pp. 396 - 406 (2024)

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