Scientific Publications since 2002

Journal Article

Failmezger, H.; Froehlich, H.; Tresch, A.: Unsupervised automated high throughput phenotyping of RNAi time-lapse movies. BMC Bioinformatics 14, 292 (2013)

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Failmezger, H.; Jaegle, B.; Schrader, A.; Huelskamp, M.; Tresch, A.: Semi-automated 3D Leaf Reconstruction and Analysis of Trichome Patterning from Light Microscopic Images. PLoS Computational Biology 9 (4), e1003029 (2013)

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Journal Article

Failmezger, H.; Praveen, P.; Tresch, A.; Froehlich, H.: Learning gene network structure from time laps cell imaging in RNAi Knock downs. BIOINFORMATICS 29 (12), pp. 1534 - 1540 (2013)

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Falke, K. C.; Glander, S.; Fei, H.; Hu, J.; de Meaux, J.; Schmitz, G.: The spectrum of mutations controlling complex traits and the genetics of fitness in plants. Current Opinion in Genetics & Development 23 (6), pp. 665 - 671 (2013)

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Fischer, M.; Schreiber, L. K.; Colby, T.; Kuckenberg, M.; Tacke, E.; Hofferbert, H.-R.; Schmidt, J.; Gebhardt, C.: Novel candidate genes influencing natural variation in potato tuber cold sweetening identified by comparative proteomics and association mapping. BMC Plant Biology 13, 113 (2013)

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Fournier-Level, A.; Wilczek, A. M.; Cooper, M. D.; Roe, J. L.; Anderson, J.; Eaton, D.; Moyers, B. T.; Petipas, R. H.; Schaeffer, R. N.; Pieper, B. et al.; Reymond, M.; Koornneef, M.; Welch, S. M.; Remington, D. L.; Schmitt, J.: Paths to selection on life history loci in different natural environments across the native range of Arabidopsis thaliana. Molecular Ecology 22 (13), pp. 3552 - 3566 (2013)

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Gan, P.; Ikeda, K.; Irieda, H.; Narusaka, M.; O'Connell, R. J.; Narusaka, Y.; Takano, Y.; Kubo, Y.; Shirasu, K.: Comparative genomic and transcriptomic analyses reveal the hemibiotrophic stage shift of Colletotrichum fungi. New Phytologist 197 (4), pp. 1236 - 1249 (2013)

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Garcia-Molina, A.; Andres-Colas, N.; Perea-Garcia, A.; Neumann, U.; Dodani, S. C.; Huijser, P.; Penarrubia, L.; Puig, S.: The Arabidopsis COPT6 Transport Protein Functions in Copper Distribution Under Copper-Deficient Conditions. Plant and Cell Physiology 54 (8), pp. 1378 - 1390 (2013)

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Gebhardt, C.: Bridging the gap between genome analysis and precision breeding in potato. Trends in Genetics 29 (4), pp. 248 - 256 (2013)

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Giska, F.; Lichocka, M.; Piechocki, M.; Dadlez, M.; Schmelzer, E.; Hennig, J.; Krzymowska, M.: Phosphorylation of HopQ1, a Type III Effector from Pseudomonas syringae, Creates a Binding Site for Host 14-3-3 Proteins. Plant Physiology 161 (4), pp. 2049 - 2061 (2013)

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Goremykin, V. V.; Nikiforova, S. V.; Biggs, P. J.; Zhong, B.; Delange, P.; Martin, W.; Woetzel, S.; Atherton, R. A.; Mclenachan, P. A.; Lockhart, P. J.: The Evolutionary Root of Flowering Plants. Systematic Biology 62 (1), pp. 50 - 61 (2013)

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Gratkowska, D. M.; Rolicka, A. T.; Bucior, E.; Sarnowska, E.; Sacharowski, S. P.; Koncz, C.; Jerzmanowski, A.; Sarnowski, T. J.: The SWI/SNF complex in Arabidopsis responds to environmental changes in temperature - dependent manner. FEBS JOURNAL 280, pp. 517 - 518 (2013)

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Gregis, V.; Andrés Lalaguna, F.; Sessa, A.; Guerra, R. F.; Simonini, S.; Mateos, J. L.; Torti, S.; Zambelli, F.; Prazzoli, G. M.; Bjerkan, K. N. et al.; Grini, P. E.; Pavesi, G.; Colombo, L.; Coupland, G.; Kater, M. M.: Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis. Genome Biology 14 (6), R56 (2013)

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Gruner, K.; Griebel, T.; Navarova, H.; Attaran, E.; Zeier, J.: Reprogramming of plants during systemic acquired resistance. FRONTIERS IN PLANT SCIENCE 4, 252 (2013)

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Journal Article

Gu, C.; Shannon, D. A.; Colby, T.; Wang, Z.; Shabab, M.; Kumari, S.; Villamor, J. G.; McLaughlin , C. J.; Weerapana , E.; Kaiser, M. et al.; Cravatt, B. F.; Van der Hoorn, R. A. L.: Chemical Proteomics with Sulfonyl Fluoride Probes Reveals Selective Labeling of Functional Tyrosines in Glutathione Transferases. Cell 20 (4), pp. 541 - 548 (2013)

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Gueye, M.; Kantoussan, J.; Tine, M.: The impact of environmental degradation on reproduction of the black-chinned tilapia Sarotherodon melanotheron from various coastal marine, estuarine and freshwater habitats. Comptes Rendus Biologies 336 (7), pp. 342 - 353 (2013)

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Hacquard, S.; Kracher, B.; Maekawa, T.; Vernaldi, S.; Schulze-Lefert, P.; Ver Loren van Themaat, E.: Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts. Proceedings of the National Academy of Sciences of the United States of America 110 (24), pp. E2219 - E2228 (2013)

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Journal Article

Hajheidrai, M.; Koncz, C.; Eick, D.: Emerging roles for RNA polymerase II CTD in Arabidopsis. Trends in Plant Science 18 (11), pp. 633 - 643 (2013)

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Heidrich, K.; Tsuda, K.; Blanvillain-Baufumé, S.; Wirthmueller, L.; Bautor, J.; Parker, J. E.: Arabidopsis TNL-WRKY domain receptor RRS1 contributes to temperature-conditioned RPS4 auto-immunity. Frontiers in Plant Science 4, 403 (2013)

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publisher-version

Journal Article

Hoerger, A. C.; Van der Hoorn, R. A. L.: The structural basis of specific protease-inhibitor interactions at the plant-pathogen interface. Current Opinion in Structural Biology 23 (6), pp. 842 - 850 (2013)

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Horn, F.; Habekuss, A.; Stich, B.: Natural variation for BYDV resistance in maize. Maydica 58 (2), pp. 173 - 181 (2013)

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Hoser, R.; Zurczak, M.; Lichocka, M.; Zuzga, S.; Dadlez, M.; Samuel, M. A.; Ellis, B. E.; Stuttmann, J.; Parker, J. E.; Hennig, J. et al.; Krzymowska, M.: Nucleocytoplasmic partitioning of tobacco N receptor is modulated by SGT1. New Phytologist 200 (1), pp. 158 - 171 (2013)

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Journal Article

Huang, X.; Ding, J.; Effgen, S.; Turck, F.; Koornneef, M.: Multiple loci and genetic interactions involving flowering time genes regulate stem branching among natural variants of Arabidopsis. New Phytologist 199 (3), pp. 843 - 857 (2013)

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Ilyas, S.; Ilyas, M.; Van der Hoorn, R. A. L.; Mathur, S.: Selective Conjugation of Proteins by Mining Active Proteomes through Click-Functionalized Magnetic Nanoparticles. ACS NANO 7 (11), pp. 9655 - 9663 (2013)

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Jacob, F.; Vernaldi, S.; Maekawa, T.: Evolution and conservation of plant NLR functions. Frontiers in immunology, 297 (2013)

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Journal Article

James, G. V.; Patel, V.; Nordstroem, K.; Klasen, J. R.; Salome, P. A.; Weigel, D.; Schneeberger, K.: User guide for mapping-by-sequencing in Arabidopsis. Genome Biology: Biology for the Post-Genomic Era 14 (6), R61 (2013)

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Journal Article

Jasik, J.; Boggetti, B.; Baluska, F.; Volkmann, D.; Gensch, T.; Rutten, T.; Altmann, T.; Schmelzer, E.: PIN2 Turnover in Arabidopsis Root Epidermal Cells Explored by the Photoconvertible Protein Dendra2. PLoS One 8 (4), e61403 (2013)

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Journal Article

Kemen, E.; Kemen, A.; Ehlers, A.; Voegele, R.; Mendgen, K.: A novel structural effector from rust fungi is capable of fibril formation. The Plant Journal 75 (5), pp. 767 - 780 (2013)

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Journal Article

Khan, M. R.; Ali, G. M.: Functional evolution of cis-regulatory modules of STMADS11 superclade MADS-box genes. Plant Molecular Biology 83 (4-5), pp. 489 - 506 (2013)

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Kim, Y. J.; Lee, H. M.; Wang, Y.; Wu, J.; Kim, S. G.; Kang, K. Y.; Park, K. H.; Kim, Y. C.; Choi, I. S.; Agrawal, G. K. et al.; Rakwal, R.; Kim, S. T.: Depletion of abundant plant RuBisCO protein using the protamine sulfate precipitation method. Proteomics 13 (14), pp. 2176 - 2179 (2013)

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Journal Article

Koenig, D.; Jimenez-Gomez, J. M.; Kimura, S.; Fulop, D.; Chitwood, D. H.; Headland, L. R.; Kumar, R.; Covington, M. F.; Devisetty, U. K.; Tat, A. V. et al.; Tohge, T.; Bolger, A.; Schneeberger, K.; Ossowski, S.; Lanz, C.; Xiong, G.; Taylor-Teeples, M.; Brady, S. M.; Pauly, M.; Weigel, D.; Usadel, B.; Fernie, A. R.; Peng, J.; Sinha, N. R.; Maloof, J. N.: Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERLICA 110 (28), pp. E2655 - E2662 (2013)

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Journal Article

Kopischke, M.; Westphal, L.; Schneeberger, K.; Clark, R.; Ossowski, S.; Wewer, V.; Fuchs, R.; Landtag, J.; Hause, G.; Doermann, P. et al.; Lipka, V.; Weigel, D.; Schulze-Lefert, P.; Scheel, D.; Rosahl, S.: Impaired sterol ester synthesis alters the response of Arabidopsis thaliana to Phytophthora infestans. The Plant Journal 73 (3), pp. 456 - 468 (2013)

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Journal Article

Kougioumoutzi, E.; Cartolano, M.; Canales, C.; Dupre, M.; Bramsiepe, J.; Vlad, D.; Rast, M.; Dello Ioio, R.; Tattersall, A.; Schnittger, A. et al.; Hay, A.; Tsiantis, M.: SIMPLE LEAF3 encodes a ribosome-associated protein required for leaflet development in Cardamine hirsuta. The Plant Journal 73 (4), pp. 533 - 545 (2013)

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Krogh Jensen, M.; Lindemose, S.; de Masi, F.; Reimer, J. J.; Nielsen, M.; Perera, V.; Workman, C. T.; Turck, F.; Grant, M.; Mundy, J. et al.; Petersen, M.; Skriver, K.: ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio 3, pp. 321 - 327 (2013)

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Journal Article

Kundu, N.; Dozier, U.; Deslandes, L.; Somssich, I. E.; Ullah, H.: Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Plant Signaling & Behavior 8 (5), e24012 (2013)

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Journal Article

Li, L.; Tacke, E.; Hofferbert, H.-R.; Luebeck, J.; Strahwald, J.; Draffehn, A.; Walkemeier, B.; Gebhardt, C.: Validation of candidate gene markers for marker-assisted selection of potato cultivars with improved tuber quality. Theoretical and Applied Genetics 126 (4), pp. 1039 - 1052 (2013)

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Logemann, E.; Birkenbihl, R.; Rawat, V.; Schneeberger, K.; Schmelzer, E.; Somssich, I. E.: Functional dissection of the PROPEP2 and PROPEP3 promoters reveals the importance of WRKY factors in mediating microbe-associated molecular pattern-induced expression. New Phytologist 198 (4), pp. 1165 - 1177 (2013)

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Journal Article

Lorek, J.; Griebel, T.; Jones, A. M.; Kuhn, H.; Panstruga, R.: The Role of Arabidopsis Heterotrimeric G-Protein Subunits in MLO2 Function and MAMP-Triggered Immunity. Molecular Plant-Microbe Interactions 26 (9), pp. 991 - 1003 (2013)

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Lota, F.; Wegmüller, S.; Buer, B.; Sato, S.; Bräutigam, A.; Hanf, B.; Bucher, M.: The cis‐acting CTTC–P1BS module is indicative for gene function of LjVTI12, a Qb‐SNARE protein gene that is required for arbuscule formation in Lotus japonicus. The Plant Journal 74, pp. 280 - 293 (2013)

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Lovell, J. T.; Aliyu, O. M.; Mau, M.; Schranz, M. E.; Koch, M.; Kiefer, C.; Song, B.-H.; Mitchell-Olds, T.; Sharbel, T. F.: On the origin and evolution of apomixis in Boechera. PLANT REPRODUCTION 26 (4), pp. 309 - 315 (2013)

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Lozano-Duran, R.; Macho, A. P.; Boutrot, F.; Segonzac, C.; Somssich, I. E.; Zipfel, C.: The transcriptional regulator BZR1 mediates trade-off between plant innate immunity and growth. ELIFE 2, e00983 (2013)

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Journal Article

Lu, H.; Wang, Z.; Shabab, M.; Oeljeklaus, J.; Verhelst, S. H.; Kaschani, F.; Kaiser, M.; Bogyo, M.; Van der Hoorn, R. A. L.: A substrate-inspired probe monitors translocation, activation, and subcellular targeting of bacterial type III effector protease AvrPphB. Chemistry and Biology 20 (2), pp. 137 - 138 (2013)

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Mann, A. J.; Hahnke, R. L.; Huang, S.; Werner, J.; Xing, P.; Barbeyon, T.; Huettel, B.; Stüber, K.; Reinhardt, R.: The Genome of the Alga-Associated Marine Flavobacterium Formosa agariphila KMM 3901T Reveals a Broad Potential for Degradation of Algal Polysaccharides. Applied and Environmental Microbiology 79, pp. 6813 - 6822 (2013)

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Misas-Villamil, J.; Kolodziejek, I.; Crabill, E.; Kaschani, F.; Niessen, S.; Shindo, T.; Kaiser, M.; Alfano, J. R.; Van der Hoorn, R. A. L.: Pseudomonas syringae pv. syringae Uses Proteasome Inhibitor Syringolin A to Colonize from Wound Infection Sites. PLoS Pathogens 9 (3), e1003281 (2013)

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Misas-Villamil, J.; Toenges, G.; Kolodziejek, I.; Sadaghiani, A. M.; Kaschani, F.; Colby, T.; Bogyo, M.; Van der Hoorn, R. A. L.: Activity profiling of vacuolar processing enzymes reveals a role for VPE during oomycete infection. The Plant Journal 73 (4), DOI: 10.1111/tpj.12062, pp. 689 - 700 (2013)

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Mueller, B. U.; Stich, B.; Piepho, H.-P.: Response to 'Controlling type 1 error rates in genome-wide association studies in plants' by Andrew W George. HEREDITY 111 (1), p. 88 - 88 (2013)

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Naz, A. A.; Raman, S.; Martinez, C. C.; Sinha, N. R.; Schmitz, G.; Theres, K.: Trifoliate encodes an MYB transcription factor that modulates leaf and shoot architecture in tomato. Proceedings of the National Academy of Sciences of the United States of America 110 (6), pp. 2401 - 2406 (2013)

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Nguyen, H. M.; Schippers, J. H. M.; Goni-Ramos, O.; Christoph, M. P.; Dortay, H.; Van der Hoorn, R. L.; Mueller-Roeber, B.: An upstream regulator of the 26S proteasome modulates organ size in Arabidopsis thaliana. The Plant Journal 74 (1), pp. 25 - 36 (2013)

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Nordstroem, K.; Albani, M.; James, G. V.; Gutjahr, C.; Hartwig, B.; Turck, F.; Paszkowski, U.; Coupland, G.; Schneeberger, K.: Mutation identification by direct comparison of whole-genome sequencing data from mutant and wild-type individuals using k-mers. Nature biotechnology 31 (4), pp. 325 - 330 (2013)

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Norousi, R.; Wickles, S.; Leidig, C.; Becker, T.; Schmid, V. J.; Beckmann, R.; Tresch, A.: Automatic post-picking using MAPPOS improves particle image detection from cryo-EM micrographs. Journal of Structural Biology 182 (2), pp. 59 - 66 (2013)

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Journal Article (2416)