Scientific Publications since 2002

Journal Article

Mine, A.; Nobori, T.; Salazar Rondon, M.C.; Winkelmueller, T. M.; Anver, S.; Becker, D.; Tsuda, K.: An incoherent feed-forward loop mediates robustness and tunability in a plant immune network. EMBO Reports 18 (3), pp. 464 - 476 (2017)

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Misas-Villamil, J.; van der Burgh, A. M.; Grosse-Holz, F.; Bach-Pages, M.; Kovács, J.; Kaschani, F.; Schilasky, S.; Emon, A. E. K.; Ruben, M.; Kaiser, M. et al.; Overkleeft, H. S.; Van der Hoorn, R. A. L.: Subunit-selective proteasome activity profiling uncovers uncoupled proteasome subunit activities during bacterial infections. The Plant Journal 90 (2), pp. 418 - 430 (2017)

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Mizzotti, C.; Galliani, B. M.; Dreni, L.; Sommer, H.; Bombarely, A.; Masiero, S.: ERAMOSA controls lateral branching in snapdragon. Scientific Reports 7, 41319 (2017)

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Moltaji, A.; Runions, A.; Samavati, F. F.: Subdivision and multiresolution for PUPs. COMPUTERS & GRAPHICS-UK 62, pp. 53 - 66 (2017)

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Monniaux, M.; McKim, S. M.; Cartolano, M.; Thévenon, E.; Parcy, F.; Tsiantis, M.; Hay, A.: Conservation vs divergence in LEAFY and APETALA1 functions between Arabidopsis thaliana and Cardamine hirsuta. New Phytologist 216, pp. 549 - 561 (2017)

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Mosca, G.; Sapala, A.; Strauß, S.; Routier-Kierzkowska, A.-L.; Smith, R. S.: On the micro-indentation of plant cells in a tissue context. Physical Biology 14 (1), 015003 (2017)

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Mukhtar, M. S.; Liu, X.; Somssich, I. E.: Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signaling & Behavior 12 (9), e1363945 (2017)

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Nakano, R. T.; Piślewska-Bednarek, M.; Yamada, K.; Edger , P. P.; Miyahara, M.; Kondo, M.; Böttcher, C.; Mori, M.; Nishimura, M.; Schulze-Lefert, P. et al.; Hara-Nishimura, I.; Bednarek, P.: PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana. The Plant Journal 89 (2), pp. 201 - 220 (2017)

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Née, G.; Kramer, K.; Nakabayashi, K.; Yuan, B.; Xiang, Y.; Miatton, E.; Finkemeier, I.; Soppe, W. J. J.: Delay of germination requires PP2C phosphatases of the ABA signalling pathway to control seed dormancy. Nature Communications 8, 72 (2017)

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Née, G.; Xiang, Y.; Soppe, W.: The release of dormancy, a wake-up call for seeds to germinate. Current Opinion in Plant Biology, Special Issue: Growth and development SI: 35, pp. 8 - 14 (2017)

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Nikolov, L. A.; Tsiantis, M.: Using mustard genomes to explore the genetic basis of evolutionary change. Current Opinion in Plant Biology 36, pp. 119 - 128 (2017)

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O'Maoiléidigh, D. S.: Intrafamily Protein Interactions Contribute to DNA Localization. Plant Cell 29 (9), pp. 2076 - 2077 (2017)

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Oka, R.; Zicola, J.; Weber, B.; Anderson, S.N.; Hodgman, C.; Gent, J. I.; Wesselink, J.-J.; Springer, N. M.; Hoefsloot, H.C.J.; Turck, F. et al.; Stam, M.: Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize. Genome Biology 18, 137 (2017)

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Oral, M.; Colleter, J.; Bekaert, M.; Taggart, J. B.; Palaiokostas, C.; McAndrew, B. J.; Vandeputte, M.; Chatain, B.; Kuhl, H.; Reinhardt, R. et al.; Peruzzi, S.; Penman, D. J.: Gene-centromere mapping in meiotic gynogenetic European seabass. BMC Genomics 18, 449 (2017)

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Pajoro, A.; Severing, E.; Angenent, G. C.; Immink, R. G. H.: Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants. Genome Biology 18, 102 (2017)

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Pankin, A.; von Korff, M.: Co-evolution of methods and thoughts in cereal domestication studies: a tale of barley (Hordeum vulgare). Current Opinion in Plant Biology 36, pp. 15 - 21 (2017)

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Poret, M.; Chandrasekar, B.; Van der Hoorn, R. A. L.; Coquet, L.; Jouenne, T.; Avice, J.-C.: Proteomic Investigations of Proteases Involved in Cotyledon Senescence: A Model to Explore the Genotypic Variability of Proteolysis Machinery Associated with Nitrogen Remobilization Efficiency during the Leaf Senescence of Oilseed Rape. PROTEOMES 5 (4), UNSP 29 (2017)

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Prince, D. C.; Rallapalli, G.; Xu, D.; Schoonbeek, H.-J.; Cevik, V.; Asai, S.; Kemen, E.; Cruz-Mireles, N.; Kemen, A.; Belhaj, K. et al.; Schornack, S.; Kamoun, S.; Holub, E. B.; Halkier, B. A.; Jones, J. D. G.: Albugo-imposed changes to tryptophanderived antimicrobial metabolite biosynthesis may contribute to suppression of non- host resistance to Phytophthora infestans in Arabidopsis thaliana. BMC Biology 15, 20 (2017)

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Pruzinska, A.; Shindo, T.; Niessen, S.; Kaschani, F.; Tóth, R.; Millar, A. H.; Van der Hoorn, R. A. L.: Major Cys protease activities are not essential for senescence in individually darkened Arabidopsis leaves. BMC Plant Biology 17, 4 (2017)

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Rast, P.; Gloeckner, I.; Boedeker, C.; Jeske, O.; Wiegand, S.; Reinhardt, R.; Schumann, P.; Rohde, M.; Spring, S.; Gloeckner, F. O. et al.; Jogler, C.; Jogler, M.: Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov in the Family Opitutaceae of the Verrucomicrobial Subdivision 4. Frontiers in Microbiology 8, 202 (2017)

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Rebeiz, M.; Tsiantis, M.: Enhancer evolution and the origins of morphological novelty. Current Opinion in Genetics & Development 45, pp. 115 - 123 (2017)

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Riedlmeier, M.; Ghirardo, A.; Wenig, M.; Knappe, C.; Koch, K.; Georgii, E.; Dey, S.; Parker, J. E.; Schnitzler , J. P.; Vlot, C. A.: Monoterpenes support systemic acquired resistance within and between plants. The Plant Cell 29,6, pp. 1440 - 1459 (2017)

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Rishmawi, L.; Bühler, J.; Jaegle, B.; Hülskamp, M.; Koornneef, M.: Quantitative trait loci controlling leaf venation in Arabidopsis. Plant, Cell and Environment 40 (8), pp. 1429 - 1441 (2017)

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Rubin, M. J.; Brock, M. T.; Davis, A. M.; German, Z. M.; Knapp, M.; Welch, S. M.; Harmer, S. L.; Maloof, J. N.; Davis, S. J.; Weinig, C.: Circadian rhythms vary over the growing season and correlate with fitness components. Molecular Ecology 26 (20), pp. 5528 - 5540 (2017)

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Runions, A.; Tsiantis, M.: The shape of things to come: From typology to predictive models for leaf diversity. American Journal of Botany 104 (10), pp. 1437 - 1441 (2017)

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Runions, A.; Tsiantis, M.; Prusinkiewicz, P.: A common developmental program can produce diverse leaf shapes. New Phytologist 216 (2), pp. 401 - 418 (2017)

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Rymen, B.; Kawamura, A.; Schaefer, S.; Breuer, C.; Iwase, A.; Shibata, M.; Ikeda, M.; Mitsuda, N.; Koncz, C.; Ohme-Takagi, M. et al.; Matsui, M.; Sugimoto, K.: ABA suppresses root hair growth via OBP4 transcriptional-regulator repression of the RSL2 promoter. Plant Physiology 173 (3), pp. 1750 - 1762 (2017)

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Samad, S.; Kurokura, T.; Koskela, E.; Toivainen, T.; Patel, V.; Mouhu, K.; Sargent, D. J.; Hytonen, T.: Additive QTLs on three chromosomes control flowering time in woodland strawberry (Fragaria vesca L.). HORTICULTURE RESEARCH 4, 17020 (2017)

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Schiessl, S.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R. J.: Targeted deep sequencing of flowering regulators in Brassica napus reveals extensive copy number variation. Scientific Data 4, 170013 (2017)

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Schiessl, S.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R.: Post-polyploidisation morphotype diversification associates with gene copy number variation. Scientific Reports 7, 41845 (2017)

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Schiessl, S. V.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R. J.: Flowering Time Gene Variation in Brassica Species Shows Evolutionary Principles. Frontiers in Plant Science 8, 1742 (2017)

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Schneeberger, K.; Henderson, I.: Editorial overview: Genome studies and molecular genetics. Current Opinion in Plant Biology 36, pp. IV - V (2017)

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Schoenhals, E. M.; Ding, J.; Ritter, E.; Paulo, M. J.; Cara, N.; Tacke, E.; Hofferbert, H.-R.; Luebeck, J.; Strahwald, J.; Gebhardt, C.: Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array. BMC Genomics 18, 642 (2017)

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Sczyrba, A.; Hofmann, P.; Belmann, P.; Koslicki, D.; Janssen, S.; Droge, J.; Gregor, I.; Majda, S.; Fiedler, J.; Dahms, E. et al.; Bremges, A.; Fritz, A.; Garrido-Oter, R.; Jorgensen, T. S.; Shapiro, N.; Blood, P. D.; Gurevich, A.; Bai, Y.; Turaev, D.; DeMaere, M. Z.; Chikhi, R.; Nagarajan, N.; Quince, C.; Meyer, F.; Balvociute, M.; Hansen, L. H.; Sorensen, S. J.; Chia, B. K. H.; Denis, B.; Froula, J. L.; Wang, Z.; Egan, R.; Don Kang, D.; Cook, J. J.; Deltel, C.; Beckstette, M.; Lemaitre, C.; Peterlongo, P.; Rizk, G.; Lavenier, D.; Wu, Y.-W.; Singer, S. W.; Jain, C.; Strous, M.; Klingenberg, H.; Meinicke, P.; Barton, M. D.; Lingner, T.; Lin, H.-H.; Liao, Y.-C.; Silva, G. G. Z.; Cuevas, D. A.; Edwards, R. A.; Saha, S.; Piro, V. C.; Renard, B. Y.; Pop, M.; Klenk, H.-P.; Goker, M.; Kyrpides, N. C.; Woyke, T.; Vorholt, J. A.; Schulze-Lefert, P.; Rubin, E. M.; Darling, A. E.; Rattei, T.; McHardy, A. C.: Critical Assessment of Metagenome Interpretation — a benchmark of metagenomics software. Nature methods 14, pp. 1063 - 1071 (2017)

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Seah, B. K. B.; Schwaha, T.; Volland, J.-M.; Huettel, B.; Dubilier, N.; Gruber-Vodicka, H. R.: Specificity in diversity: single origin of a widespread ciliate-bacteria symbiosis. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 284 (1858), 20170764 (2017)

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Shigenaga, A. M.; Berens, M. L.; Tsuda, K.; Argueso, C. T.: Towards engineering of hormonal crosstalk in plant immunity. Current Opinion in Plant Biology 38, pp. 164 - 172 (2017)

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Shin, J.; Sánchez-Villarreal, A.; Davis, A. M.; Du, S. X.; Berendzen, K. W.; Koncz, C.; Ding, Z.; Li, C.; Davis, S. J.: The metabolic sensor AKIN10 modulates the Arabidopsis circadian clock in a light-dependent manner. Plant, Cell and Environment 40, pp. 997 - 1008 (2017)

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Sinclair, S. A.; Larue, C.; Bonk, L.; Khan, A.; Castillo-Michel, H.; Stein, R. J.; Grolimund, D.; Begerow, D.; Neumann, U.; Haydon, M. J. et al.; Kraemer, U.: Etiolated Seedling Development Requires Repression of Photomorphogenesis by a Small Cell-Wall-Derived Dark Signal. Current Biology 27 (22), pp. 3403 - 3418 (2017)

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Soyk, S.; Mueller, N.A.; Park, S.J.; Schmalenbach, I.; Jiang, K.; Hayama, R.; Zhang, L.; Van Eck, J.; Jiménez-Gómez, J. M.; Lippman, Z. N.: Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato. Nature Genetics 49, pp. 162 - 168 (2017)

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Stamm, P.; Strauß, S.; Montenegro-Johnson, T. D.; Smith, R. S.; Bassel, G. W.: In Silico Methods for Cell Annotation, Quantification of Gene Expression, and Cell Geometry at Single-Cell Resolution Using 3DCellAtlas. PLANT HORMONES: METHODS AND PROTOCOLS, 3RD EDITION, pp. 99 - 123 (2017)

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Templer, S. E.; Ammon, A.; Pscheidt, D.; Ciobotea, O.; Schuy, C.; McCollum, C.; Sonnewald, U.; Hanemann, A.; Förster, J.; Ordon, F. et al.; von Korff, M.; Voll, L. M.: Metabolite profiling of barley flag leaves under drought and combined heat and drought stress reveals metabolic QTLs for metabolites associated with antioxidant defense. Journal of Experimental Botany 68 (7), pp. 1697 - 1713 (2017)

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Tomé, F.; Jansseune, K.; Saey, B.; Grundy, J.; Vandenbroucke, K.; Hannah, M. A.; Redestig, H.: rosettR: protocol and software for seedling area and growth analysis. Plant Methods 13, 13 (2017)

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Toraeng, P.; Vikstrom, L.; Wunder, J.; Woetzel, S.; Coupland, G.; Agren, J.: Evolution of the selfing syndrome: Anther orientation and herkogamy together determine reproductive assurance in a self-compatible plant. Evolution 71 (9), pp. 2206 - 2218 (2017)

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Tsugawa, S.; Hervieux, N.; Kierzkowski, D.; Routier-Kierzkowska, A.-L.; Sapala, A.; Hamant, O.; Smith, R. S.; Roeder, A. H. K.; Boudaoud, A.; Li, C.-B.: Clones of cells switch from reduction to enhancement of size variability in Arabidopsis sepals. Development 144 (23), pp. 4398 - 4405 (2017)

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van Esse, W.; Walla, A.; Finke, A.; Koornneef, M.; Pecinka, A.; von Korff, M.: Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174 (4), pp. 2397 - 2408 (2017)

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Vu, G. T. H.; Cao, H. X.; Fauser, F.; Reiss, B.; Puchta, H.; Schubert, I.: Endogenous sequence patterns predispose the repair modes of CRISPR/Cas9-induced DNA double-stranded breaks in Arabidopsis thaliana. The Plant Journal 92 (1), pp. 57 - 67 (2017)

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Vu, G. T. H.; Cao, H. X.; Reiss, B.; Schubert, I.: Deletion-bias in DNA double-strand break repair differentially contributes to plant genome shrinkage. New Phytologist 214 (4), pp. 1712 - 1721 (2017)

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Wanderley, A. M.; Vasconcelos, S.; Huettel, B.; Machado, I. C.; Benko-Iseppon, A. M.: Development of 15 SSR polymorphic markers for the endangered Ameroglossum pernambucense Eb. Fischer, S. Vogel & A. V. Lopes (Scrophulariaceae), and cross-transferability in congeneric taxa. Brazilian Journal of Botany 40 (4), pp. 1007 - 1011 (2017)

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Wang, Y.; Gupta, R.; Song, W.; Huh, H.-H.; Lee, S. E.; Wu, J.; Agrawal, G. K.; Rakwal, R.; Kang, K. Y.; Park, S.-R. et al.; Kim, S. T.: Label-free quantitative secretome analysis of Xanthomonas oryzae pv. oryzae highlights the involvement of a novel cysteine protease in its pathogenicity. Journal of Proteomics 169, pp. 202 - 214 (2017)

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Wu, J.; Wang, Y.; Kim, S. G.; Jung, K.-H.; Gupta, R.; Kim, J.; Park, Y.; Kang, K. Y.; Kim, S. T.: A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa. Physiologia Plantarum 161 (2), pp. 273 - 284 (2017)

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