Publikationen von R. Reinhardt

Zeitschriftenartikel (88)

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Lambrecht, S. J.; Kanesaki, Y.; Fuss, J.; Huettel, B.; Reinhardt, R.; Steglich, C.: Interplay and Targetome of the Two Conserved Cyanobacterial sRNAs Yfr1 and Yfr2 in Prochlorococcus MED4. Scientific Reports 9, 14331 (2019)
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Pucker, B.; Holtgraewe, D.; Stadermann, K. B.; Frey, K.; Huettel, B.; Reinhardt, R.; Weisshaar, B.: A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set. PLoS One 14 (5), e0216233 (2019)
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Hagemann, M.; Gaertner, K.; Scharnagl, M.; Bolay, P.; Lott, S. C.; Fuß, J.; Huettel, B.; Reinhardt, R.; Klaehn, S.; Hess, W. R.: Identification of the DNA methyltransferases establishing the methylome of the cyanobacterium Synechocystis sp PCC 6803. DNA RESEARCH 25 (4), S. 343 - 352 (2018)
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Wenzel, A.; Altmueller, J.; Ekici, A. B.; Popp, B.; Stueber, K.; Thiele, H.; Pannes, A.; Staubach, S.; Salido, E.; Nuernberg, P. et al.; Reinhardt, R.; Reis, A.; Rump, P.; Hanisch, F.-G.; Wolf, M. T. F.; Wiesener, M.; Huettel, B.; Beck, B. B.: Single molecule real time sequencing in ADTKD-MUC1 allows complete assembly of the VNTR and exact positioning of causative mutations. Scientific Reports 8, 4170 (2018)
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Chao, Y.; Li, L.; Girodat, D.; Foerstner, K. U.; Said, N.; Corcoran, C.; Smiga, M.; Papenfort, K.; Reinhardt, R.; Wieden, H.-J. et al.; Luisi, B. F.; Vogel, J.: In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways. Molecular Cell 65 (1), S. 39 - 51 (2017)
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Jiao, W.-B.; Garcia Accinelli, G.; Hartwig, B.; Kiefer, C.; Baker, D.; Severing, E.; Willing, E.-M.; Piednoel, M.; Woetzel, S.; Madrid-Herrero, E. et al.; Huettel, B.; Huemann, U.; Reinhardt, R.; Koch, M. A.; Swan, D.; Clavijo, B.; Coupland, G.; Schneeberger, K.: Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data. Genome Research 27 (5), S. 778 - 786 (2017)
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Metge, F.; Czaja-Hasse, L.; Reinhardt, R.; Dieterich, C.: FUCHS - towards full circular RNA characterization using RNAseq. PeerJ 5, e2934 (2017)
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Oral, M.; Colleter, J.; Bekaert, M.; Taggart, J. B.; Palaiokostas, C.; McAndrew, B. J.; Vandeputte, M.; Chatain, B.; Kuhl, H.; Reinhardt, R. et al.; Peruzzi, S.; Penman, D. J.: Gene-centromere mapping in meiotic gynogenetic European seabass. BMC Genomics 18, 449 (2017)
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Rast, P.; Gloeckner, I.; Boedeker, C.; Jeske, O.; Wiegand, S.; Reinhardt, R.; Schumann, P.; Rohde, M.; Spring, S.; Gloeckner, F. O. et al.; Jogler, C.; Jogler, M.: Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov in the Family Opitutaceae of the Verrucomicrobial Subdivision 4. Frontiers in Microbiology 8, 202 (2017)
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Schiessl, S.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R. J.: Targeted deep sequencing of flowering regulators in Brassica napus reveals extensive copy number variation. Scientific Data 4, 170013 (2017)
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Schiessl, S.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R.: Post-polyploidisation morphotype diversification associates with gene copy number variation. Scientific Reports 7, 41845 (2017)
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Schiessl, S. V.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R. J.: Flowering Time Gene Variation in Brassica Species Shows Evolutionary Principles. Frontiers in Plant Science 8, 1742 (2017)
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Alles, J.; Menegatti, J.; Motsch, N.; Hart, M.; Reinhardt, R.; Eichner, N.; Meister, G.; Grässer, F. A.: miRNA expression profiling of Epstein-Barr virus-associated NKTL cell lines by Illumina deep sequencing. Febs Open Bio 6, S. 251 - 263 (2016)
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Alves, R. N.; Gomes, A. S.; Stueber, K.; Tine, M.; Thorne, M. A. S.; Smaradottir, H.; Reinhardt, R.; Clark, M. S.; Ronnestad, I.; Power, D. M.: The transcriptome of metamorphosing flatfish. BMC Genomics 17, 413 (2016)
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Blättner, S.; Das, S.; Paprotka, K.; Eilers, U.; Krischke, M.; Kretschmer, D.; Remmele, C.W.; Dittrich, M.; Müller, T.; Schuelein-Voelk, C. et al.; Hertlein, T.; Huettel, B.; Reinhardt, R.; Ohlsen, K.; Rudel, T.; Fraunholz, M.J.: Staphylococcus aureus Exploits a Non-ribosomal Cyclic Dipeptide to Modulate Survival within Epithelial Cells and Phagocytes. PLoS Pathogens 12, e1005857 (2016)
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Cartolano, M.; Huettel, B.; Hartwig, B.; Reinhardt, R.; Schneeberger, K.: cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing. PLoS One 11 (6), e0157779 (2016)
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Das, S.; Lindemann, C.; Young, B.C.; Muller, J.; Österreich, B.; Ternette, N.; Winkler, A.-C.; Paprotka, K.; Reinhardt, R.; Förstner, K.U. et al.; Allen, E.; Flaxman, A.; Yamaguchi, Y.; Rollier, C.S.; Diemen, P.V.; Blättner, S.; Remmele, C.W.; Selle, M.; Dittrich, M.; Müller, T.; Vogel, J.; Ohlsen, K.; Crook, D.W.; Massey, R.; Wilson, D.J.; Rudel, T.; Wyllie, D.H.; Fraunholz, M.J.: Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation. Proceedings of the National Academy of Sciences of the United States of America 113 (22), S. E3101 - E3110 (2016)
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Dörries, M.; Wöhlbrand, L.; Kube, M.; Reinhardt, R.; Rabus, R.: Genome and catabolic subproteomes of the marine, nutritionally versatile, sulfate-reducing bacterium Desulfococcus multivorans DSM 2059. BMC Genomics 19, 918 (2016)
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Dugar, G.; Svensson, S. L.; Bischler, T.; Waeldchen, S.; Reinhardt, R.; Sauer, M.; Sharma, C. M.: The CsrA-FliW network controls polar localization of the dual-function flagellin mRNA in Campylobacter jejuni. Nature Communications 7, 11667 (2016)
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Forat, S.; Huettel, B.; Reinhardt, R.; Fimmers, R.; Haidl, G.; Denschlag, D.; Olek, K.: Methylation Markers for the Identification of Body Fluids and Tissues from Forensic Trace Evidence. PLoS One 11 (2), e0147973 (2016)
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Hoenicka, H.; Lehnhardt, D.; Nunna, S.; Reinhardt, R.; Jeltsch, A.; Briones, V.; Fladung, M.: Level of tissue differentiation influences the activation of a heat-inducible flower-specific system for genetic containment in poplar (Populus tremula L.). Plant Cell Reports 35, S. 369 - 384 (2016)
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Holmqvist, E.; Wright, P. R.; Li, L.; Bischler, T.; Barquist, L.; Reinhardt, R.; Backofen, R.; Vogel, J.: Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo. EMBO Journal 35 (9), S. 991 - 1011 (2016)
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Jakobi, T.; Czaja-Hasse, L.; Reinhardt, R.; Dieterich, C.: Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts. Genomics, Proteomics & Bioinformatics 14, S. 216 - 223 (2016)
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Kungulovski, G.; Mauser, R.; Reinhardt, R.; Jeltsch, A.: Application of recombinant TAF3 PHD domain instead of anti-H3K4me3 antibody. Epigenetics & Chromatin 9, 11 (2016)
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Louro, B.; Kuhl, H.; Tine, M.; de Koning, D.-J.; Batargias, C.; Volckaert, F. A. M.; Reinhardt, R.; Canario, A.V.M.; Power, D.M.: Characterization and refinement of growth related quantitative trait loci in European sea bass (Dicentrarchus labrax) using a comparative approach. Aquaculture 455, S. 8 - 21 (2016)
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Smirnov, A.; Foerstner, K. U.; Holmqvist, E.; Otto, A.; Guenster, R.; Becher, D.; Reinhardt, R.; Vogel, J.: Grad-seq guides the discovery of ProQ as a major small RNA-binding protein. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 113 (41), S. 11591 - 11596 (2016)
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Wasmund, K.; Cooper, M.; Schreiber, L.; Lloyd, K.G.; Baker, B.J.; Petersen, D.G.; Jørgensen, B.B.; Stepanauskas, R.; Reinhardt, R.; Schramm, A. et al.; Loy, A.; Adrian, L.: Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling. mBio, e00266-16 (2016)
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Westermann, A. J.; Foerstner, K. U.; Amman, F.; Barquist, L.; Chao, Y.; Schulte, L. N.; Mueller, L.; Reinhardt, R.; Stadler, P. F.; Vogel, J.: Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions. Nature 529 (7587), S. 496 - + (2016)
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Frey, F. P.; Urbany, C.; Huettel, B.; Reinhardt, R.; Stich, B.: Genome-wide expression profiling and phenotypic evaluation of European maize inbreds at seedling stage in response to heat stress. BMC Genomics 16, 123 (2015)
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Burmeister, T.; Bartels, G.; Groeger, D.; Trautmann, H.; Schwartz, S.; Lenz, K.; Tietze-Buerger, C.; Viardot, A.; Waesch, R.; Horst, H.-A. et al.; Reinhardt, R.; Goekbuget, N.; Hoelzer, D.; Kneba, M.; Brueggemann, M.: Single Nucleotide PolymorPhisms in IKZF1, ARID5B and CEBPE are a Risk Factor for the Development of Adult ALL. CLINICAL LYMPHOMA MYELOMA & LEUKEMIA 14, S. S114 - S114 (2014)
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Burmeister, T.; Bartels, G.; Groeger, D.; Trautmann, H.; Schwartz, S.; Lenz, K.; Tietze-Buerger, C.; Viardot, A.; Waesch, R.; Horst, H.-A. et al.; Reinhardt, R.; Goekbuget, N.; Hoelzer, D.; Kneba, M.; Brueggemann, M.: Germline variants in IKZF1, ARID5B, and CEBPE as risk factors for adult- onset acute lymphoblastic leukemia: an analysis from the GMALL study group. HAEMATOLOGICA 99 (2), S. E23 - E25 (2014)
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Dohm, J. C.; Minoche, A. E.; Holtgraewe, D.; Capella-Gutierrez, S.; Zakrzewski, F.; Tafer, H.; Rupp, O.; Rossleff Soerensen, T.; Stracke, R.; Reinhardt, R. et al.; Goesmann, A.; Kraft, T.; Schulz, B.; Stadler, P. F.; Schmidt, T.; Gabaldon, T.; Lehrach, H.; Weisshaar, B.; Himmelbauer, H.: The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). NATURE 505 (7484), S. 546 - + (2014)
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Emperle, M.; Rajavelu, A.; Reinhardt, R.; Jurkowska, R. Z.; Jeltsch, A.: Cooperative DNA Binding and Protein/DNA Fiber Formation Increases the Activity of the Dnmt3a DNA Methyltransferase. The Journal of Biological Chemistry 289 (43), S. 29602 - 29613 (2014)
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Gomes, A. S.; Alves, R. N.; Stueber, K.; Thorne, M. A. S.; Smaradottir, H.; Reinhardt, R.; Clark, M. S.; Ronnestad, I.; Power, D. M.: Transcriptome of the Atlantic halibut (Hippoglossus hippoglossus). MARINE GENOMICS 18, S. 101 - 103 (2014)
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Kopf, M.; Klähn, S.; Voss, B.; Stüber, K.; Huettel, B.; Reinhardt, R.; Hess, W. R.: Finished Genome Sequence of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC 6714. Genome Announcements 2 (4), e00757-14 (2014)
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Kube, M.; Siewert, C.; Migdoll, A. M.; Duduk, B.; Holz, S.; Rabus, R.; Seemueller, E.; Mitrovic, J.; Mueller, I.; Buettner, C. et al.; Reinhardt, R.: Analysis of the Complete Genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and Their Comparison to the Obligate Parasites from 'Candidatus Phytoplasma'. Journal of Molecular Microbiology and Biotechnology 24 (1), S. 19 - 36 (2014)
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Kungulovski, G.; Kycia, I.; Tamas, R.; Jurkowska, R. Z.; Kudithipudi, S.; Henry, C.; Reinhardt, R.; Labhart, P.; Jeltsch, A.: Application of histone modification-specific interaction domains as an alternative to antibodies. Genome Research 24 (11), S. 1842 - 1853 (2014)
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Loehrer, M.; Vogel, A.; Huettel, B.; Reinhardt, R.; Benes, V.; Duplessis, S.; Usadel, B.; Schaffrath, U.: On the current status of Phakopsora pachyrhizi genome sequencing. Frontiers in Plant Science 5, 377 (2014)
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Meharg, C.; Khan, B.; Norton, G.; Deacon, C.; Johnson, D.; Reinhardt, R.; Huettel, B.; Meharg, A. A.: Trait-directed de novo population transcriptome dissects genetic regulation of a balanced polymorphism in phosphorus nutrition/arsenate tolerance in a wild grass, Holcus lanatus. New Phytologist 201, S. 144 - 1554 (2014)
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Nunna, S.; Reinhardt, R.; Ragozin, S.; Jeltsch, A.: Targeted Methylation of the Epithelial Cell Adhesion Molecule (EpCAM) Promoter to Silence Its Expression in Ovarian Cancer Cells. PLoS One 9 (1), e87703 (2014)
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Petasch, J.; Disch, E.-M.; Markert, S.; Becher, D.; Schweder, T.; Huettel, B.; Reinhardt, R.; Harder, J.: The oxygen-independent metabolism of cyclic monoterpenes in Castellaniella defragrans 65Phen. BMC Microbiology 14, 164 (2014)
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Remmele, C. W.; Xian, Y.; Albrecht, M.; Faulstich, M.; Fraunholz, M.; Heinrichs, E.; Dittrich, M. T.; Müller, T.; Reinhardt, R.; Rudel, T.: Transcriptional landscape and essential genes of Neisseria gonorrhoeae. Nucleic Acids Research 42 (16), S. 10579 - 10595 (2014)
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Shanmugam, R.; Aklujkar, M.; Schaefer, M.; Reinhardt, R.; Nickel, O.; Reuter, G.; Lovley, D. R.; Ehrenhofer-Murray, A.; Nelle, W.; Ankri, S. et al.; Helm, M.; Jurkowski, T. P.; Jeltsch, A.: The Dnmt2 RNA methyltransferase homolog of Geobacter sulfurreducens specifically methylates tRNA-Glu. Nucleic Acids Research (London) 42 (10), S. 6487 - 6496 (2014)
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Siewert, C.; Hess, W. R.; Duduk, B.; Huettel, B.; Reinhardt, R.; Buettner, C.; Kube, M.: Complete genome determination and analysis of Acholeplasma oculi strain 19L, highlighting the loss of basic genetic features in the Acholeplasmataceae. BMC Genomics 15, 931 (2014)
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Strijkstra, A.; Trautwein, K.; Jarling, R.; Woehlbrand, L.; Doerries, M.; Reinhardt, R.; Drozdowska, M.; Golding, B. T.; Wilkes, H.; Rabus, R.: Anaerobic Activation of p-Cymene in Denitrifying Betaproteobacteria: Methyl Group Hydroxylation versus Addition to Fumarate. Applied and Environmental Microbiology 80 (24), S. 7592 - 7603 (2014)
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Tine, M.; Kuhl, H.; Gagnaire, P.-A.; Louro, B.; Desmarais, E.; Martins, R. S. T.; Hecht, J.; Knaust, F.; Belkhir, K.; Klages, S. et al.; Dieterich, R.; Stueber, K.; Piferrer, F.; Guinand, B.; Bierne, N.; Volckaert, F. A. M.; Bargelloni, L.; Power, D. M.; Bonhomme, F.; Canario, A. V. M.; Reinhardt, R.: \European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation. Nature Communications 5, 5770 (2014)
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Wasmund, K.; Algora, C.; Müller, J.; Krüger, M.; Lloyd, K.G.; Reinhardt, R.; Adrian, L.: Development and application of primers for the class Dehalococcoidia (phylum Chloroflexi) enables deep insights into diversity and stratification of subgroups in the marine subsurface. Environmental Microbiology, 10.1111/1462-2920.12510 (2014)
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Acevedo Garcia, J.; Collins, N. C.; Ahmadinejad, N.; Ma, L.; Houben, A.; Bednarek, P.; Benjdia, M.; Freialdenhoven, A.; Altmueller, J.; Nuernberg, P. et al.; Reinhardt, R.; Schulze-Lefert, P.; Panstruga, R.: Fine mapping and chromosome walking towards the Ror1 locus in barley (Hordeum vulgare L.). Theoretical and Applied Genetics 126 (12), S. 2969 - 2982 (2013)
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Dugar, G.; Herbig, A.; Förstner, K. U.; Heidrich, N.; Reinhardt, R.; Nieselt, K.; Sharma, C.: High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates. PLoS Genetics 9 (5), e1003495 (2013)
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Mann, A. J.; Hahnke, R. L.; Huang, S.; Werner, J.; Xing, P.; Barbeyon, T.; Huettel, B.; Stüber, K.; Reinhardt, R.: The Genome of the Alga-Associated Marine Flavobacterium Formosa agariphila KMM 3901T Reveals a Broad Potential for Degradation of Algal Polysaccharides. Applied and Environmental Microbiology 79, S. 6813 - 6822 (2013)
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