Scientific Publications since 2002

Journal Article

Locci, F.; Parker, J. E.: Plant NLR immunity activation and execution: a biochemical perspective. Open Biology 14 (1), 230387 (2024)

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Loo, E. P. I.; Durán, P.; Pang, T. Y.; Westhoff, P.; Deng, C.; Durán, C.; Lercher, M.; Garrido Oter, R.; Frommer, W. B.: Sugar transporters spatially organize microbiota colonization along the longitudinal root axis of Arabidopsis. Cell Host & Microbe 32 (4), pp. 543 - 556.e6 (2024)

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Lopes, F. L.; Formosa-Jordan, P.; Malivert, A.; Margalha, L.; Confraria, A.; Feil, R.; Lunn, J. E.; Jönsson, H.; Landrein, B.; Baena-González, E.: Sugar signaling modulates SHOOT MERISTEMLESS expression and meristem function in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 121 (37), e2408699121 (2024)

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López, H.; Mercier, R.: Meiosis: The silk moth and the elephant. Current Biology 34 (11), pp. R211 - R213 (2024)

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Ma, S.; An, C.; Lawson, A. W.; Cao, Y.; Sun, Y.; Tan, E. Y. J.; Pan, J.; Jirschitzka, J.; Kümmel, F.; Mukhi, N. et al.; Han, Z.; Feng, S.; Wu, B.; Schulze-Lefert, P.; Chai, J.: Oligomerization-mediated autoinhibition and cofactor binding of a plant NLR. Nature 632, pp. 869 - 876 (2024)

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Ma, X.; Vanneste, S.; Chang, J.; Ambrosino, L.; Barry, K.; Bayer, T.; Bobrov, A. A.; Boston, L. B.; Campbell, J. E.; Chen, H. et al.; Chiusano, M. L.; Dattolo, E.; Grimwood, J.; He, G.; Jenkins, J.; Khachaturyan, M.; Marin-Guirao, L.; Mesterhazy, A.; Muhd, D.-D.; Pazzaglia, J.; Plott, C.; Rajasekar, S.; Rombauts, S.; Ruocco, M.; Scott, A. D.; Tan, M. P.; Van de Velde, J. D.; Vanholme, B.; Webber, J.; Wong, L. L.; Yan, M.; Sung, Y. Y.; Novikova, P. Y.; Schmutz, J.; Reusch, T. B. H.; Procaccini, G.; Olsen, J. L.; Van de Peer, Y.: Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature Plants 10, pp. 240 - 255 (2024)

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Manosalva Perez, N.; Ferrari, C.; Engelhorn, J.; Depuydt, T.; Nelissen, H.; Hartwig, T.; Vandepoele, K.: MINI-AC: inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles. The Plant Journal 117 (1), pp. 280 - 301 (2024)

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Mata Sucre, Y.; Krátká, M.; Oliveira, L.; Neumann, P.; Macas, J.; Schubert, V.; Huettel, B.; Kejnovsky, E.; Houben , A.; Pedrosa-Harand , A. et al.; Souza, G.; Marques, A.: Repeat-based holocentromeres of the woodrush Luzula sylvatica reveal new insights into the evolutionary transition from mono- to holocentricity. Nature Communications 15, 9565 (2024)

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Mata Sucre, Y.; Parteka, L. M.; Ritz, C. M.; Gatica-Arias, A.; Félix, L. P.; Thomas, W. W.; Souza, G.; Vanzela, A. .. L.; Pedrosa-Harand, A.; Marques, A.: Oligo-barcode illuminates holocentric karyotype evolution in Rhynchospora (Cyperaceae). Frontiers in Plant Science 7 (15), 1330927 (2024)

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Mishra, P.; Roggen, A.; Ljung, K.; Albani, M.; Vayssières, A.: Adventitious rooting in response to long-term cold: a possible mechanism of clonal growth in alpine perennials. Frontiers in Plant Science 15, 1352830 (2024)

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Mosca, G.; Eng, R. C.; Adibi, M.; Yoshida, S.; Lane, B.; Bergheim, L.; Weber, G.; Smith, R. S.; Hay, A.: Growth and tension in explosive fruit. Current Biology 34, pp. 1010 - 1022.e4 (2024)

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Northen, T. R.; Kleiner, M.; Torres, M.; Kovacs, A. T.; Nicolaisen, M. H.; Krzyzanowska, D. M.; Sharma, S.; Lund, G.; Jelsbak, L.; Baars, O. et al.; Kindtler, N. L.; Wippel, K.; Dinesen, C.; Ferrarezi, J. A.; Marian, M.; Pioppi, A.; Xu, X.; Andersen, T. G.; Geldner, N.; Schulze-Lefert, P.; Vorholt, J. A.; Garrido-Oter, R.: Community standards and future opportunities for synthetic communities in plant-microbiota research. Nature Microbiology 9 (11), pp. 2774 - 2784 (2024)

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Ntoanidou, S.; Kaplani, A.; Paloukopoulou, C.; Bazakos, C.; Patelou, E.; Doukidou, L.; Kotoula, A.-A.; Gklavakis, E.; Hatzilazarou, S.; Karioti, A. et al.; Nianiou-Obeidat, E.; Kostas, S.; Kanellis, A. K.: Identification of high carnosic acid rosemary (Salvia rosmarinus Spenn.) genotypes through genetic diversity exploitation, chemical profiling, and transcriptomic approaches. Industrial Crops and Products 214, 118562 (2024)

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Oliveira, L.; Neumann, P.; Mata Sucre, Y.; Kuo, Y.-T.; Marques, A.; Schubert, V.; Macas, J.: KNL1 and NDC80 represent new universal markers for the detection of functional centromeres in plants. Chromosome Research 32 (1), 3 (2024)

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Ordon, J.; Thouin, J.; Nakano, R. T.; Ma, K.-W.; Zhang, P.; Huettel, B.; Garrido Oter, R.; Schulze-Lefert, P.: Chromosomal barcodes for simultaneous tracking of near-isogenic bacterial strains in plant microbiota. Nature Microbiology (2024)

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Peckham, M.; Neumann, U.; Culley, S.: Introduction to women in microscopy: Volume 2. Special Issue 295 (1), pp. 3 - 5 (2024)

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Phookaew, P.; Ma, Y.; Suzuki, T.; Stolze, S. C.; Harzen, A.; Sano, R.; Nakagami, H.; Demura, T.; Ohtani, M.: Active protein ubiquitination regulates xylem vessel functionality. The Plant Cell 36 (9), pp. 3298 - 3317 (2024)

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Regmi, K. C.; Ghosh, S.; Koch, B.; Neumann, U.; Stein, B.; O'Connell, R. J.; Innes, R. W.: Three-Dimensional Ultrastructure of Arabidopsis Cotyledons Infected with Colletotrichum higginsianum. Molecular Plant-Microbe Interactions 37 (4), pp. 396 - 406 (2024)

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Romeiro Motta, M.; Nédélec, F.; Saville, H.; Woelken, E.; Jacquerie, C.; Pastuglia, M.; Stolze, S. C.; Van De Slijke, E.; Böttger, L.; Belcram, K. et al.; Nakagami, H.; De Jaeger, G.; Bouchez, D.; Schnittger, A.: The cell cycle controls spindle architecture in Arabidopsis by activating the augmin pathway. Developmental Cell 59, pp. 1 - 15 (2024)

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Sajeev, N.; Koornneef, M.; Bentsink, L.: A commitment for life: Decades of unraveling the molecular mechanisms behind seed dormancy and germination. The Plant Cell, koad328, pp. 1 - 19 (2024)

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Schmitz, G.; Linstaedter, A.; Frank, A.S. K.; Dittberner, H.; Thome, J.; Schrader, A.; Linne von Berg, K.-H.; Fulgione, A.; Coupland, G.; de Meaux, J.: Environmental filtering of life-history trait diversity in urban populations of Arabidopsis thaliana. Journal of Ecology 112 (1), pp. 14 - 27 (2024)

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Seah, B. K. B.; Singh, A.; Vetter, D. E.; Emmerich, C.; Peters, M.; Soltys, V.; Huettel, B.; Swart, E. C.: Nuclear dualism without extensive DNA elimination in the ciliate Loxodes magnus. Proceedings of the National Academy of Sciences of the United States of America 121 (39), e566212 (2024)

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Shen, D.; Wippel, K.; Remmel, S.; Zhang, Y.; Kuertoes, N.; Neumann, U.; Kopriva, S.; Andersen, T. G.: The Arabidopsis SGN3/GSO1 receptor kinase integrates soil nitrogen status into shoot development. The EMBO Journal 43, pp. 2486 - 2505 (2024)

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Shen, Q.; Hasegawa, K.; Oelerich, N.; Prakken, A.; Tersch, L. W.; Wang, J.; Reichhardt, F.; Tersch, A.; Choo, J. C.; Timmers, T. et al.; Hofmann, K.; Parker, J. E.; Chai, J.; Maekawa, T.: Cytoplasmic calcium influx mediated by plant MLKLs confers TNL-triggered immunity. Cell Host & Microbe 32, pp. P453 - 465.e6 (2024)

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Somssich, M.: From the archives: male-female communication, glue that keeps cells together, and a SUPERMAN for all flowering plants. The Plant Cell, pp. 795 - 796 (2024)

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Song, W.; Liu, L.; Yu, D.; Bernardy, H.; Jirschitzka, J.; Huang, S.; Jia, A.; Jemielniak, W.; Acker, J.; Laessle, H. et al.; Wang, J.; Shen, Q.-H.; Chen, W.; Li, P.; Parker, J. E.; Han, Z.; Schulze-Lefert, P.; Chai, J., J.: Substrate-induced condensation activates plant TIR domain proteins. Nature 627 (8005), pp. 847 - 853 (2024)

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Souza, T. B.; Parteka, L. M.; Kuo, Y. T.; Nascimento, T. H. D.; Schubert, V.; Pedrosa-Harand, A.; Marques, A.; Houben, A.; Vanzela, A. L. S.: Distinct patterns of satDNA distribution in holocentric chromosomes of spike-sedges. Genome (2024)

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Sun, H.-Q.; Abeli, P.; Campoy, J. A.; Ruetjes, T.; Krause, K.; Jiao, W.-B.; Beaudry, R.; Schneeberger, K.: The identification and analysis of meristematic mutations within the apple tree that developed the RubyMac sport mutation. BMC Plant Biology 24 (1), 912 (2024)

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Tjeng, B.; Arimon, M.; Grindeland, H. B.; Dalla Libera, A.; Fulgione, A.: ParaMask, a new method to identify multicopy genomic regions, corrects major biases in whole-genome sequencing data. PREPRINT available. Research Square (2024)

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Journal Article

Valasiadis, D.; Kollaros, M. G.; Michailidis, M.; Polychroniadou, C.; Tanou, G.; Bazakos, C.; Molassiotis, A.: Wide-characterization of high and low dry matter kiwifruit through spatiotemporal multi-omic approach. Postharvest Biology and Technology 209, 112727 (2024)

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van Boerdonk, S.; Saake, P.; Wanke, A.; Neumann, U.; Zuccaro, A.: b-Glucan-binding proteins are key modulators of immunity and symbiosis in mutualistic plant-microbe interactions. Current Opinion in Plant Biology 81, 102610 (2024)

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Vijayan, A.; Mody, T. A.; Yu, Q.; Wolny, A.; Cerrone, L.; Strauss, S.; Tsiantis, M.; Smith, R. S.; Hamprecht, F. A.; Kreshuk, A. et al.; Schneitz, K.: A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context. Development 151 (14), dev202800 (2024)

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Wang, D.; Wei, L.; Ma, J.; Wan, Y.; Huang, K.; Sun, Y.; Wen, H.; Chen, Z.; Li, Z.; Yu, D. et al.; Cui, H.; Wu, J.; Wu, Y.; Kim, S. T.; Zhao, J.; Parker, J.; Tsuda, K.; Jiang, C.; Wang, Y.: Bacillus cereus NJ01 induces SA- and ABA-mediated immunity against bacterial pathogens through the EDS1-WRKY18 module. Cell Reports 43 (4), 113985 (2024)

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Wang, X.; Yu, D.; Yu, J.; Hu, H.; Hang, R.; Amador, Z.; Chen, Q.; Chai, J.; Chen, X.: Toll/interleukin-1 receptor (TIR) domain-containing proteins have NAD-RNA decapping activity. Nature Communications 15 (1), 2261 (2024)

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Wang, Y.; Fuentes, R. R.; van Rengs, W. M. J.; Effgen, S.; Zaidan, M. W. A.; Franzen, R.; Susanto, T.; Fernandes, J. B.; Mercier, R.; Underwood, C. J.: Harnessing clonal gametes in hybrid crops to engineer polyploid genomes. Nature Genetics 56, pp. 1075 - 1079 (2024)

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Watson, A. E.; Guitton, B.; Soriano, A.; Rivallan, R.; Vignes, H.; Farrera, I.; Huettel, B.; Arnaiz, C.; Falavigna, V.; Coupel-Ledru, A. et al.; Segura, V.; Sarah, G.; Dufayard, J.-F.; Sidibe-Bocs, S.; Costes, E.; Andres, F.: Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple. Frontiers in Plant Science 15, 1352757 (2024)

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Wu, Y.; Xu, W.; Zhao, G.; Lei, Z.; Li, K.; Liu, J.; Huang, S.; Wang, J.; Zhong, X.; Yi X., n. et al.; Wang, Y.; Zhang, H.; He, Y.; Ye, Z.; Meng, Y.; Chang, X.; Lin, H.; Wang, X.; Gao, Y.; Chai, J.; Parker, J. E.; Deng, Y.; Zhang, Y.; Gao, M.; He, Z.: The rice ROD1-TIR-EDS1-PAD4-ADR1 module controls immune homeostasis and multipathogen resistance. Science, eadr2138 (2024)

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Xuan, Y. H.; Wang, Y.; Gao, L.; Gan, X.: Editorial: Novel insights into the regulatory role of sugar and amino acids signaling in plant-microbe interactions. Frontiers in Plant Science 14, 1261186 (2024)

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Zainu, A.; Dupaigne, P.; Bouchouika, S.; Cau, J.; Clement, J. A. J.; Auffret, P.; Ropars, V.; Charbonnier, J.-B.; de Massy, B.; Mercier, R. et al.; Kumar, R.; Baudat, F.: FIGNL1-FIRRM is essential for meiotic recombination and prevents DNA damage-independent RAD51 and DMC1 loading. Nature Communications 15 (1), 7015 (2024)

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Zhang, M.; Marques, A.: How plants with hundreds of centromeres crossover. Nature Plants 10 (3), pp. 354 - 355 (2024)

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