Publikationen von S. Hacquard

Durán, P.; Ellis, T. J.; Thiergart, T.; Agren, J.; Hacquard, S.: Climate drives rhizosphere microbiome variation and divergent selection between geographically distant Arabidopsis populations. New Phytologist 236, S. 608 - 621 (2022)

Hacquard, S.; Wang, E.; Slater, H.; Martin, F.: Impact of global change on the plant microbiome. Special Issue 234 (6), S. 1907 - 1909 (2022)

Meyer, F.; Fritz, A.; Deng, Z.-L.; Koslicki, D.; Lesker, T. R.; Gurevich, A.; Robertson, G.; Alser, M.; Antipov, D.; Beghini, F. et al.; Bertrand, D.; Brito, J. J.; Brown, C. T.; Buchmann, J.; Buluc, A.; Chen, B.; Chikhi, R.; Clausen, P. T. L. C.; Cristian, A.; Dabrowski, P. W.; Darling, A. E.; Egan, R.; Eskin, E.; Georganas, E.; Goltsman, E.; Gray, M. A.; Hansen, L. H.; Hofmeyr, S.; Huang, P.; Irber, L.; Jia, H.; Jorgensen, T. S.; Kieser, S. D.; Klemetsen, T.; Kola, A.; Kolmogorov, M.; Korobeynikov, A.; Kwan, J.; LaPierre, N.; Lemaitre, C.; Li, C.; Limasset, A.; Malcher-Miranda, F.; Mangul, S.; Marcelino, V. R.; Marchet, C.; Marijon, P.; Meleshko, D.; Mende, D. R.; Milanese, A.; Nagarajan, N.; Nissen, J.; Nurk, S.; Oliker, L.; Paoli, L.; Peterlongo, P.; Piro, V. C.; Porter, J. S.; Rasmussen, S.; Rees, E. R.; Reinert, K.; Renard, B.; Robertsen, E. M.; Rosen, G. L.; Ruscheweyh, H.-J.; Sarwal, V.; Segata, N.; Seiler, E.; Shi, L.; Sun, F.; Sunagawa, S.; Sorensen, S. J.; Thomas, A.; Tong, C.; Trajkovski, M.; Tremblay, J.; Uritskiy, G.; Vicedomini, R.; Wang, Z.; Wang, Z.; Wang, Z.; Warren, A.; Willassen, N.; Yelick, K.; You, R.; Zeller, G.; Zhao, Z.; Zhu, S.; Zhu, J.; Garrido-Oter, R.; Gastmeier, P.; Hacquard, S.; Haeussler, S.; Khaledi, A.; Maechler, F.; Mesny, F.; Radutoiu, S.; Schulze-Lefert, P.; Smit, N.; Strowig, T.; Bremges, A.; Sczyrba, A.; McHardy, A. C.: Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods 19 (4), S. 429 - 440 (2022)

Hou, S.; Thiergart, T.; Vannier, N.; Mesny, F.; Ziegler, J.; Pickel, B.; Hacquard, S.: A microbiota-root-shoot circuit favours Arabidopsis growth over defence under suboptimal light. Nature Plants (2021)

Hou, S.; Wolinska, K. W.; Hacquard, S.: Microbiota-root-shoot-environment axis and stress tolerance in plants. Current Opinion in Plant Biology 62, 102028 (2021)

Mataigne, V.; Vannier, N.; Vandenkoornhuyse, P.; Hacquard, S.: Microbial Systems Ecology to Understand Cross-Feeding in Microbiomes. Frontiers in Microbiology 12 (2021)

Mayer, T.; Mari, A.; Almario, J.; Murillo-Roos, M.; Abdullah, H. S. M.; Dombrowski, N.; Hacquard, S.; Kemen, E. M.; Agler, M. T.: Obtaining deeper insights into microbiome diversity using a simple method to block host and nontargets in amplicon sequencing. Molecular Ecology Resources 21 (6), S. 1952 - 1965 (2021)

Mesny, F.; Miyauchi, S.; Thiergart, T.; Pickel, B.; Atanasova, L.; Karlsson, M.; Huettel, B.; Barry, K.W.; Haridas, S.; Chen, C. et al.; Bauer, D.; Andreopoulos, W.; Pangilinan, J.; LaButti, K.; Riley, R.; Lipzen, A.; Clum, A.; Drula, E.; Henrissat, B.; Kohler, A.; Grigoriev, I.V.; Martin, F.M.; Hacquard, S.: Genetic determinants of endophytism in the Arabidopsis root mycobiome. Nature Communications 12, 7227 (2021)

Schuetz, V.; Frindte, K.; Cui, J.; Zhang, P.; Hacquard, S.; Schulze-Lefert, P.; Knief, C.; Schulz, M.; Doermann, P.: Differential Impact of Plant Secondary Metabolites on the Soil Microbiota. Frontiers in Microbiology 12, 666010 (2021)

Wolinska, K. W.; Vannier, N.; Thiergart, T.; Pickel, B.; Gremmen, S.; Piasecka, A.; Piślewska-Bednarek, M.; Nakano, R. T.; Belkhadir, Y.; Bednarek, P. et al.; Hacquard, S.: Tryptophan metabolism and bacterial commensals prevent fungal dysbiosis in Arabidopsis roots. Proceedings of the National Academy of Sciences of the United States of America 118 (49), e2111521118 (2021)

Zhang, P.; Spaepen, S.; Bai, Y.; Hacquard, S.; Garrido-Oter, R.: Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities. ISME Communications 73 (1), S. 1 (2021)

Thiergart, T.; Durán, P.; Ellis, T.; Vannier, N.; Garrido-Oter, R.; Kemen, E.; Roux, F.; Alonso-Blanco, C.; Agren, J.; Schulze-Lefert, P. et al.; Hacquard, S.: Root microbiota assembly and adaptive differentiation among European Arabidopsis populations. Nature Ecology & Evolution 4 (1), S. 122 - 131 (2020)

Getzke, F.; Thiergart, T.; Hacquard, S.: Contribution of bacterial-fungal balance to plant and animal health. Current Opinion in Microbiology 49, S. 66 - 72 (2019)

Hacquard, S.: Stephane Hacquard. New Phytologist 224 (4), S. 1442 - 1443 (2019)

Vannier, N.; Agler, M.; Hacquard, S.: Microbiota-mediated disease resistance in plants. PLoS Pathogens 15 (6), e1007740 (2019)

Deveau, A.; Bonito, G.; Uehling, J.; Paoletti, M.; Becker, M.; Bindschedler, S.; Hacquard, S.; Herve, V.; Labbe, J.; Lastovetsky, O. A. et al.; Mieszkin, S.; Millet, L. J.; Vajna, B.; Junier, P.; Bonfante, P.; Krom, B. P.; Olsson, S.; van Elsas, J. D.; Wick, L. Y.: Bacterial-fungal interactions: ecology, mechanisms and challenges. FEMS Microbiology Reviews 42 (3), fuy008, S. 335 - 352 (2018)

Durán, P.; Thiergart, T.; Garrido-Oter, R.; Agler, M.T.; Kemen, E.; Schulze-Lefert, P.; Hacquard, S.: Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival. Cell 175 (4), S. 973 - + (2018)

Hassani, M. A.; Durán, P.; Hacquard, S.: Microbial interactions within the plant holobiont. MICROBIOME 6, 58 (2018)

Robbins, C.; Thiergart, T.; Hacquard, S.; Garrido Oter, R.; Gans, W.; Peiter, E.; Schulze-Lefert, P.; Spaepen, S.: Root-associated bacterial and fungal community profiles of Arabidopsis thaliana are robust across contrasting soil P levels. Phytobiomes 2 (1), S. 24 - 34 (2018)

Dombrowski, N.; Schlaeppi, K.; Agler, M.T.; Hacquard, S.; Kemen, E.; Garrido Oter, R.; Wunder, J.; Coupland, G.; Schulze-Lefert, P.: Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time. The ISME Journal 11, 10.1038/ismej.2016.109, S. 43 - 55 (2017)

Hacquard, S.: Commentary: Microbial Small Talk: Volatiles in Fungal-Bacterial Interactions. Frontiers in Microbiology 8, 1 (2017)

Hacquard, S.; Spaepen, S.; Garrido-Oter, R.; Schulze-Lefert, P.: Interplay Between Innate Immunity and the Plant Microbiota. Annual Review of Phytopathology (55), S. 565 - 589 (2017)

Hacquard, S.: Disentangling the factors shaping microbiota composition across the plant holobiont. New Phytologist 209 (2), S. 454 - 457 (2016)

Hacquard, S.; Kracher, B.; Hiruma, K.; Muech, P. C.; Garrido Oter, R.; Thon, M. R.; Weimann, A.; Damm, U.; Dallery, J.-F.; Hainaut, M. et al.; Henrissat, B.; Lespinet, O.; Sacristan, S.; Ver Loren van Themaat, E.; Kemen, E.; McHardy, A. C.; Schulze-Lefert, P.; O'Connell, R. J.: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi. Nature Communications 7, 11362 (2016)

Hiruma, K.; Gerlach, N.; Sacristan, S.; Nakano, R. T.; Hacquard, S.; Kracher, B.; Neumann, U.; Ramirez, D.; Bucher, M.; O'Connell, R. J. et al.; Schulze-Lefert, P.: Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent. Cell 165 (2), S. 464 - 474 (2016)

Takahara, H.; Hacquard, S.; Kombrink, A.; Bleddy Hughes, H.; Halder, V.; Robin, G. P.; Hiruma, K.; Neumann, U.; Shinya, T.; Kombrink, E. et al.; Shibuya, N.; Thomma, B. P. H. J.; O'Connell, R. J. O.: Colletotrichum higginsianum extracellular LysM proteins play dual roles in appressorial function and suppression of chitin-triggered plant immunity. New Phytologist 211, S. 1323 - 1337 (2016)

Hacquard, S.; Garrido Oter, R.; González, A.; Spaepen, S.; Ackermann, G.; Lebeis, S.; McHardy, A. C.; Dangl, J. L.; Knight, R.; Ley, R. et al.; Schulze-Lefert, P.: Microbiota and Host Nutrition across Plant and Animal Kingdoms. Cell Host & Microbe 17 (5), S. 603 - 613 (2015)

Hacquard, S.; Schadt, C. W.: Towards a holistic understanding of the beneficial interactions across the Populus microbiome. New Phytologist, Special Issue 205 (4), S. 1424 - 1430 (2015)

Hacquard, S.; Kracher, B.; Maekawa, T.; Vernaldi, S.; Schulze-Lefert, P.; Ver Loren van Themaat, E.: Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts. Proceedings of the National Academy of Sciences of the United States of America 110 (24), S. E2219 - E2228 (2013)

Hacquard, S.: The Genomics of Powdery Mildew Fungi: Past Achievements, Present Status and Future Prospects. In: Fungi, Bd. 70, S. 109 - 142. Academic Press, London (2014)