Publications of B. Huettel

Kraege, A.; Chavarro-Carrero, E.; Schnell, E.; Heilmann-Heimbach, S.; Becker, K.; Koehrer, K.; Huettel, B.; Sargheini, N.; Schiffer, P.; Waldvogel, A.-M. et al.; Thomma, B. P. H. J.; Rovenich, H.: High quality genome assembly and annotation (v1) of the eukaryotic freshwater microalga Coccomyxa elongata SAG 216-3b. G3-Genes - Genomes - Genetics 15 (2), jkae294 (2025)

Kramer, J.; Zuebert, C.; Huettel, B.; Kube, M.; Hoelzle, L. E.: The complete genome of Mycoplasmoides cavipharyngis strain 117C, a close relative of hemotrophic mycoplasma. Microbiology Resource Announcements, e00556-24 (2025)

Mozer, A.; Di-Nizo, C. B.; Consul, A.; Huettel, B.; Jaeger, R.; Akintayo, A.; Erhardt, C.; Fenner, L.; Fischer, D.; Forat, S. et al.; Gimnich, F.; Grobe, P.; Martin, S.; Nathan, V.; Saeed, A.; von Der Mark, L.; Woehle, C.; Olek, K.; Misof, B.; Astrin, J. J.: FOGS: A SNPSTR Marker Database to Combat Wildlife Trafficking and a Cell Culture Bank for Ex-Situ Conservation. Molecular Ecology Resources, e14062 (2025)

Sun, H.-Q.; Tusso, S.; Dent, C. I.; Goel, M.; Wijfjes, R. Y.; Baus, L. C.; Dong, X.; Campoy, J. A.; Kurdadze, A.; Walkemeier, B. et al.; Saenger, C.; Huettel, B.; Hutten, R. C. B.; van Eck, H. J.; Dehmer, K. J.; Schneeberger, K.: The phased pan-genome of tetraploid European potato. Nature (2025)

Toth, R.; Huettel, B.; Eini, O.; Varrelmann, M.; Kube, M.: The complete genome sequence of the stolbur pathogen "Candidatus14 (1), e0064024 (2025)

Boehm, J. W.; Huettel, B.; Schneider, B.; Kube, M.: The complete genome of "Candidatus Phytoplasma fraxini" AshY1 from the ash yellows group. Microbiology Resource Announcements 13 (7) (2024)

Capilla-Perez, L.; Solier, V.; Gilbault, E.; Lian, Q.; Goel, M.; Goel, M.; Huettel, B.; Keurentjes, J. J. B.; Loudet, O.; Mercier, R.: Enhanced recombination empowers the detection and mapping of Quantitative Trait Loci. Communications Biology 7 (1), 829 (2024)

Castellani, M.; Zhang, M.; Thangavel, G.; Mata Sucre, Y.; Lux, T.; Campoy, J. A.; Marek, M.; Huettel, B.; Sun, H.-Q.; Mayer, K. F. X. et al.; Schneeberger, K.; Marques, A.: Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning. Nature Plants (2024)

Emonet, A.; Pérez Antón, M.; Neumann, U.; Dunemann, S.; Huettel, B.; Koller, R.; Hay, A.: Amphicarpic development in the emerging model organism Cardamine chenopodiifolia. New Phytologist 244, pp. 1041 - 1056 (2024)

Goel, M.; Campoy, J. A.; Krause, K.; Baus, L. C.; Sahu, A.; Sun, H.-Q.; Walkemeier, B.; Marek, M.; Beaudry, R.; Ruiz, D., D. et al.; Huettel, B.; Schneeberger, K.: The vast majority of somatic mutations in plants are layer-specific. Genome Biology: Biology for the Post-Genomic Era 25 (1), 194 (2024)

Klug, K.; Zhu, P.; Pattar, P.; Mueller, T.; Safari, N.; Sommer, F.; Valero-Jimenez, C. A.; van Kan, J. A. L.; Huettel, B.; Stueber, K. et al.; Scheuring, D.; Schroda, M.; Hahn, M.: Genome Comparisons between Botrytis fabae and the Closely Related Gray Mold Fungus Botrytis cinerea Reveal Possible Explanations for Their Contrasting Host Ranges. Journal of Fungi 10 (3), 216 (2024)

Lian, Q.; Huettel, B.; Walkemeier, B.; Mayjonade, B.; Lopez-Roques, C.; Gil, L.; Roux, F.; Schneeberger, K.; Mercier, R.: A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range. Nature Genetics 56, pp. 982 - 991 (2024)

Mata Sucre, Y.; Krátká, M.; Oliveira, L.; Neumann, P.; Macas, J.; Schubert, V.; Huettel, B.; Kejnovsky, E.; Houben , A.; Pedrosa-Harand , A. et al.; Souza, G.; Marques, A.: Repeat-based holocentromeres of the woodrush Luzula sylvatica reveal new insights into the evolutionary transition from mono- to holocentricity. Nature Communications 15, 9565 (2024)

Ordon, J.; Thouin, J.; Nakano, R. T.; Ma, K.-W.; Zhang, P.; Huettel, B.; Garrido Oter, R.; Schulze-Lefert, P.: Chromosomal barcodes for simultaneous tracking of near-isogenic bacterial strains in plant microbiota. Nature Microbiology (2024)

Seah, B. K. B.; Singh, A.; Vetter, D. E.; Emmerich, C.; Peters, M.; Soltys, V.; Huettel, B.; Swart, E. C.: Nuclear dualism without extensive DNA elimination in the ciliate Loxodes magnus. Proceedings of the National Academy of Sciences of the United States of America 121 (39), e566212 (2024)

Watson, A. E.; Guitton, B.; Soriano, A.; Rivallan, R.; Vignes, H.; Farrera, I.; Huettel, B.; Arnaiz, C.; Falavigna, V.; Coupel-Ledru, A. et al.; Segura, V.; Sarah, G.; Dufayard, J.-F.; Sidibe-Bocs, S.; Costes, E.; Andres, F.: Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple. Frontiers in Plant Science 15, 1352757 (2024)

Baumgarten, L.; Pieper, B.; Song, B.; Mane, S.; Lempe, J.; Lamb, J.; Cooke, E. L.; Srivastava, R.; Struett, S.; Zanko, D. et al.; Casimiro, P. G. P.; Hallab, A.; Cartolano, M.; Tattersall, A. D.; Huettel, B.; Filatov, D. A.; Pavlidis, P.; Neuffer, B.; Bazakos, C.; Schaefer, H.; Mott, R.; Gan, X.; Alonso-Blanco, C.; Laurent, S.; Tsiantis, M.: Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns. PLoS Biology 21 (7), e3002191 (2023)

Frommer, B.; Muellner, S.; Holtgraewe, D.; Viehoever, P.; Huettel, B.; Toepfer, R.; Weisshaar, B.; Zyprian, E.: Phased grapevine genome sequence of an Rpv12 carrier for biotechnological exploration of resistance to Plasmopara viticola. Frontiers in Plant Science 14, 1180982 (2023)

Hartwig, T.; Banf, M.; Prietsch, G. P.; Zhu, J.-Y.; Mora-Ramirez, I.; Schippers, J. H. M.; Snodgrass, S. J.; Seetharam, A. S.; Huettel, B.; Kolkman, J. M. et al.; Yang, J.; Engelhorn, J.; Wang, Z.-Y.: Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize. Genome Biology and Evolution 24 (1), 108 (2023)

Kuo, Y.-T.; Souza Câmara, A.; Schubert, V.; Neumann, P.; Macas, J.; Melzer, M.; Chen, J.; Fuchs, J.; Abel, S.; Klocke, E. et al.; Huettel, B.; Himmelbach, A.; Demidov, D.; Dunemann, F.; Mascher, M.; Ishii, T.; Marques, A.; Houben, A.: Holocentromeres can consist of merely a few megabase-sized satellite arrays. Nature Communications 14, 3502 (2023)

Mata-Sucre, Y.; Matzenauer, W.; Castro, N.; Huettel, B.; Pedrosa-Harand, A.; Marques, A.; Souza, G.: Repeat-based phylogenomics shed light on unclear relationships in the monocentric genus Juncus L. (Juncaceae). Molecular Phylogenetics and Evolution 189, 107930 (2023)

Sarnowska, E.; Kubala, S.; Cwiek, P.; Sacharowski, S.; Oksinska, P.; Steciuk, J.; Zaborowska, M.; Szurmak, J. M.; Dubianski, R.; Maassen, A. et al.; Stachowiak, M.; Huettel, B.; Ciesla, M.; Nowicka, K.; Rolicka, A. T.; Alseekh, S.; Bucior, E.; Franzen, R.; Skoneczna, A.; Domagalska, M. A.; Amar, S.; Hajirezaei, M.-R.; Siedlecki, J. A.; Fernie, A. R.; Davis, S. J.; Sarnowski, T. J.: A non-canonical function of Arabidopsis ERECTA proteins and a role of the SWI3B subunit of the SWI/SNF chromatin remodeling complex in gibberellin signaling. The Plant Journal 115 (3), pp. 788 - 802 (2023)

Seah, B.; Singh, M.; Emmerich, C.; Singh, A.; Woehle, C.; Huettel, B.; Byerly, A.; Stover, N.A.; Sugiura, M.; Harumoto, T. et al.; Swart, E.C.: MITE infestation accommodated by genome editing in the germline genome of the ciliate Blepharisma. Proceedings of the National Academy of Sciences of the United States of America 120 (4), e2213985120 (2023)

Sidhu, C.; Kirstein, I. V.; Meunier, C. L.; Rick, J.; Fofonova, V.; Wiltshire, K. H.; Steinke, N.; Vidal-Melgosa, S.; Hehemann, J.-H.; Huettel, B. et al.; Schweder, T.; Fuchs, B. M.; Amann, R. I.; Teeling, H.: Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom. Microbiome 11 (1), 77 (2023)

Singh, M.; Seah, B.; Emmerich, C.; Singh, A.; Woehle, C.; Huettel, B.; Byerly, A.; Stover, N.A.; Sugiura, M.; Harumoto, T. et al.; Swart, E. C.: Origins of genome-editing excisases as illuminated by the somatic genome of the ciliate Blepharisma. Proceedings of the National Academy of Sciences of the United States of America 120 (4), e2213887120 (2023)

Steiner, T.; Zachary, M.; Bauer, S.; Mueller, M. J.; Krischke, M.; Radziej, S.; Klepsch, M.; Huettel, B.; Eisenreich, W.; Rudel, T. et al.; Beier, D.: Central Role of Sibling Small RNAs NgncR_162 and NgncR_163 in Main Metabolic Pathways of Neisseria gonorrhoeae. mBio 14 (1) (2023)

Flood, P. J.; Nowrousian, M.; Huettel, B.; Woehle, C.; Becker, K.; Wollenweber, T. E.; Begerow, D.; Grefen, C.: Draft genome of the aardaker (Lathyrus tuberosus L.), a tuberous legume. BMC genomic data 23 (1), 70 (2022)

Gao, H.; Song, W.; Severing, E.; Vayssières, A.; Huettel, B.; Franzen, R.; Richter, R.; Chai, J.; Coupland, G.: PIF4 enhances DNA binding by CDF2 to co-regulate target gene expression and promote Arabidopsis hypocotyl cell elongation. Nature Plants 8, pp. 1082 - 1093 (2022)

Hofstatter, P. G.; Thangavel, G.; Lux, T.; Neumann, P.; Vondrak, T.; Novak, P.; Zhang, M.; Costa, L.; Castellani, M.; Scott, A. et al.; Toegelová, H.; Fuchs, J.; Mata-Sucre, Y.; Dias, Y.; Vanzela, A. L. L.; Huettel, B.; Almeida, C. C. S.; Šimková, H.; Souza, G.; Pedrosa-Harand, A.; Macas, J.; Mayer, K. F. X.; Houben, A.; Marques, A.: Repeat-based holocentromeres influence genome architecture and karyotype evolution. Cell (2022)

Leenen, E.; Erger, F.; Altmuller, J.; Wenzel, A.; Thiele, H.; Harth, A.; Tschernoster, N.; Lokhande, S.; Joerres, A.; Becker, J.-U. et al.; Ekici, A.; Huettel, B.; Beck, B.; Weidemann, A.: Alport syndrome and autosomal dominant tubulointerstitial kidney disease frequently underlie end-stage renal disease of unknown origin-a single-center analysis. Nephrology Dialysis Transplantation 37 (10), pp. 1895 - 1905 (2022)

Lian, Q.; Solier, V.; Walkemeier, B.; Durand, S.; Huettel, B.; Schneeberger, K.; Mercier, R.: The megabase-scale crossover landscape is largely independent of sequence divergence. Nature Communications 13 (1), 3828 (2022)

Muyle, A. M.; Seymour, D. K.; Lv, Y.; Huettel, B.; Gaut, B. S.: Gene Body Methylation in Plants: Mechanisms, Functions, and Important Implications for Understanding Evolutionary Processes. Genome Biology and Evolution 14 (4), evac038 (2022)

Sun, H.-Q.; Jiao, W.-B.; Campoy, J. A.; Krause, K.; Goel, M.; Folz-Donahue, K.; Kukat, C.; Huettel, B.; Schneeberger, K.: Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar. Nature Genetics 54 (3), pp. 342 - 348 (2022)

van Rengs, W. M. J.; Schmidt, M. H.-W.; Effgen, S.; Le, D. B.; Wang, Y.; Zaidan, M. W. A.; Huettel, B.; Schouten, H. J.; Usadel, B.; Underwood, C. J.: A chromosome scale tomato genome built from complementary PacBio and Nanopore sequences alone reveals extensive linkage drag during breeding. The Plant Journal 110, pp. 572 - 588 (2022)

von Heilborn, D. H.; Nover, L.-L.; Weber, M.; Hoelzl, G.; Gisch, N.; Waldhans, C.; Mittler, M.; Kreyenschmidt, J.; Woehle, C.; Huettel, B. et al.; Lipski, A.: Polar lipid characterization and description of Chryseobacterium capnotolerans sp. nov., isolated from high CO2-containing atmosphere and emended descriptions of the genus Chryseobacterium, and the species C. balustinum, C. daecheongense, C. formosense, C. gleum, C. indologenes, C. joostei, C. scophthalmum and C. ureilyticum. International Journal of Systematic and Evolutionary Microbiology 72 (5), 005372 (2022)

Wopperer, F. J.; Knaup, K. X.; Stanzick, K.J.; Schneider, K.; Jobst-Schwan, T.; Ekici, A. B.; Uebe, S.; Wenzel, A.; Schliep, S.; Schuerfeld, C. et al.; Seitz, R.; Bernhardt, W.; Goedel, M.; Wiesener, A.; Popp, B.; Stark, K. J.; Groene, H.-J.; Friedrich, B.; Weiss, M.; Basic-Jukic, N.; Schiffer, M.; Schroeppel, B.; Huettel, B.; Beck, B. B.; Sayer, J. A.; Ziegler, C.; Buettner-Herold, M.; Amann, K.; Heid, I. M.; Reis, A.; Pasutto, F.; Wiesener, M. S.: Diverse molecular causes of unsolved autosomal dominant tubulointerstitial kidney diseases. Kidney International 102 (2), pp. 405 - 420 (2022)

Aecyo, P.; Marques, A.; Huettel, B.; Silva, A.; Esposito, T.; Ribeiro, E.; Leal, I.R.; Gagnon, E.; Souza, G.; Pedrosa-Harand, A.: Plastome evolution in the Caesalpinia group (Leguminosae) and its application in phylogenomics and populations genetics. Planta 254 (2), 27 (2021)

Costa, L.; Marques, A.; Buddenhagen, C.; Thomas, W. W.; Huettel, B.; Schubert, V.; Dodsworth, S.; Houben, A.; Souza, G.; Pedrosa-Harand, A.: Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA. Annals of Botany, mcab063 (2021)

Freire, R.; Weisweiler, M.; Guerreiro, R.; Baig, N.; Huettel, B.; Obeng-Hinneh, E.; Renner, J.; Hartje, S.; Muders, K.; Truberg, B. et al.; Rosen, A.; Prigge, V.; Bruckmueller, J.; Luebeck, J.; Stich, B.: Chromosome-scale reference genome assembly of a diploid potato clone derived from an elite variety. G3: Genes, Genomes, Genetics 11 (12), jkab330 (2021)

Garighan, J.; Dvorak, E.; Estevan, J.; Loridon, K.; Huettel, B.; Sarah, G.; Farrera, I.; Leclercq, J.; Grynberg, P.; Coiti Togawa, R. et al.; Mota do Carmo Costa, M.; Costes, E.; Andres, F.: The Identification of Small RNAs Differentially Expressed in Apple Buds Reveals a Potential Role of the Mir159-MYB Regulatory Module during Dormancy. Plants 10 (12), 2665 (2021)

Graf, J. S.; Schorn, S.; Kitzinger, K.; Ahmerkamp, S.; Woehle, C.; Huettel, B.; Schubert, C. J.; Kuypers, M. M. M.; Milucka, J.: Anaerobic endosymbiont generates energy for ciliate host by denitrification. NATURE 591 (7850), pp. 445 - 450 (2021)

Heidler von Heilborn, D.; Reinmueller, J.; Hoelzl, G.; Meier-Kolthoff, J. P.; Woehle, C.; Marek, M.; Huettel, B.; Lipski, A.: Sphingomonas aliaeris sp. nov., a new species isolated from pork steak packed under modified atmosphere. International Journal of Systematic and Evolutionary Microbiology 71 (8), 004973 (2021)

Mesny, F.; Miyauchi, S.; Thiergart, T.; Pickel, B.; Atanasova, L.; Karlsson, M.; Huettel, B.; Barry, K.W.; Haridas, S.; Chen, C. et al.; Bauer, D.; Andreopoulos, W.; Pangilinan, J.; LaButti, K.; Riley, R.; Lipzen, A.; Clum, A.; Drula, E.; Henrissat, B.; Kohler, A.; Grigoriev, I.V.; Martin, F.M.; Hacquard, S.: Genetic determinants of endophytism in the Arabidopsis root mycobiome. Nature Communications 12, 7227 (2021)

Migur, A.; Heyl, F.; Fuss, J.; Srikumar, A.; Huettel, B.; Steglich, C.; Prakash, J. S. S.; Reinhardt, R.; Backofen, R.; Owttrim, G. W. et al.; Hess, W. R.: The temperature-regulated DEAD-box RNA helicase CrhR interactome: autoregulation and photosynthesis-related transcripts. Journal of Experimental Botany 72 (21), pp. 7564 - 7579 (2021)

Plesken, C.; Pattar, P.; Reiss, B.; Noor, Z. N.; Zhang, L.; Klug, K.; Huettel, B.; Hahn, M.: Genetic Diversity of Botrytis cinerea Revealed by Multilocus Sequencing, and Identification of B. cinerea Populations Showing Genetic Isolation and Distinct Host Adaptation. Frontiers in Plant Science 12, 663027 (2021)

Priest, T.; Orellana, l. H.; Huettel, B.; Fuchs, B. M.; Amann, R.: Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms. PeerJ 9, e11721 (2021)

Schneider, C.; Woehle, C.; Greve, C.; D'Haese, C. A.; Wolf, M.; Hiller, M.; Janke, A.; Balint, M.; Huettel, B.: Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola). GigaScience 10 (5), giab035, pp. 1 - 12 (2021)

Skern-Mauritzen, R.; Malde, K.; Eichner, C.; Dondrup, M.; Furmanek, T.; Besnier, F.; Komisarczuk, A. Z.; Nuhn, M.; Dalvin, S.; Edvardsen, R. B. et al.; Huettel, B.; Stueber, K.; Grotmol, S.; Karlsbakk, E.; Kersey, P.; Leong, J. S.; Glover, K. A.; Reinhardt, R.; Lien, S.; Jonassen, I.; Koop, B. F.; Nilsen, F.: The salmon louse genome: Copepod features and parasitic adaptations. Genomics 113, pp. 3666 - 3680 (2021)

Andrés Lalaguna, F.; Kinoshita, A.; Kalluri, N.; Fernandez, V.; Falavigna, V.; Cruz, T. M. D.; Jang, S.; Chiba, Y.; Seo, M.; Mettler-Altmann, T. et al.; Huettel, B.; Coupland, C.: The sugar transporter SWEET10 acts downstream of FLOWERING LOCUS T during floral transition of Arabidopsis thaliana. BMC Plant Biology 20 (1), 53 (2020)

Campoy, J. A.; Sun, H.-Q.; Goel, M.; Jiao, W.-B.; Folz-Donahue, K.; Wang, N.; Rubio, M.; Liu, C.; Kukat, C.; Ruiz, D. et al.; Huettel, B.; Schneeberger, K.: Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes. Genome Biology and Evolution 21 (1), 306 (2020)