Publications of B. Huettel

Castellani, M.; Zhang, M., M.; Thangavel, G.; Mata Sucre, Y.; Lux, T.; Campoy, J. A.; Marek, M.; Huettel, B.; Sun, H.; Mayer, K. F. X. et al.; Schneeberger, K.; Marques, A.: Meiotic recombination dynamics in plants with repeat-based holocentromeres1 shed light on the primary drivers of crossover patterning. bioRxiv, 2023.04.28.538594 (2023)

Frommer, B.; Muellner, S.; Holtgraewe, D.; Viehoever, P.; Huettel, B.; Toepfer, R.; Weisshaar, B.; Zyprian, E.: Phased grapevine genome sequence of an Rpv12 carrier for biotechnological exploration of resistance to Plasmopara viticola. Frontiers in Plant Science 14, 1180982 (2023)

Hartwig, T.; Banf, M.; Prietsch, G. P.; Zhu, J.-Y.; Mora-Ramirez, I.; Schippers, J. H. M.; Snodgrass, S. J.; Seetharam, A. S.; Huettel, B.; Kolkman, J. M. et al.; Yang, J.; Engelhorn, J.; Wang, Z.-Y.: Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize. Genome Biology and Evolution 24 (1), 108 (2023)

Kuo, Y.-T.; Souza Câmara, A.; Schubert, V.; Neumann, P.; Macas, J.; Melzer, M.; Chen, J.; Fuchs, J.; Abel, S.; Klocke, E. et al.; Huettel, B.; Himmelbach, A.; Demidov, D.; Dunemann, F.; Mascher, M.; Ishii, T.; Marques, A.; Houben, A.: Holocentromeres can consist of merely a few megabase-sized satellite arrays. Nature Communications 14, 3502 (2023)

Flood, P. J.; Nowrousian, M.; Huettel, B.; Woehle, C.; Becker, K.; Wollenweber, T. E.; Begerow, D.; Grefen, C.: Draft genome of the aardaker (Lathyrus tuberosus L.), a tuberous legume. BMC genomic data 23 (1), 70 (2022)

Gao, H.; Song, W.; Severing, E.; Vayssières, A.; Huettel, B.; Franzen, R.; Richter, R.; Chai, J.; Coupland, G.: PIF4 enhances DNA binding by CDF2 to co-regulate target gene expression and promote Arabidopsis hypocotyl cell elongation. Nature Plants 8, pp. 1082 - 1093 (2022)

Hofstatter, P. G.; Thangavel, G.; Lux, T.; Neumann, P.; Vondrak, T.; Novak, P.; Zhang, M.; Costa, L.; Castellani, M.; Scott, A. et al.; Toegelová, H.; Fuchs, J.; Mata-Sucre, Y.; Dias, Y.; Vanzela, A. L. L.; Huettel, B.; Almeida, C. C. S.; Šimková, H.; Souza, G.; Pedrosa-Harand, A.; Macas, J.; Mayer, K. F. X.; Houben, A.; Marques, A.: Repeat-based holocentromeres influence genome architecture and karyotype evolution. Cell (2022)

Lian, Q.; Solier, V.; Walkemeier, B.; Durand, S.; Huettel, B.; Schneeberger, K.; Mercier, R.: The megabase-scale crossover landscape is largely independent of sequence divergence. Nature Communications 13 (1), 3828 (2022)

Sun, H.-Q.; Jiao, W.-B.; Campoy, J. A.; Krause, K.; Goel, M.; Folz-Donahue, K.; Kukat, C.; Huettel, B.; Schneeberger, K.: Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar. Nature Genetics 54 (3), pp. 342 - 348 (2022)

van Rengs, W. M. J.; Schmidt, M. H.-W.; Effgen, S.; Le, D. B.; Wang, Y.; Zaidan, M. W. A.; Huettel, B.; Schouten, H. J.; Usadel, B.; Underwood, C. J.: A chromosome scale tomato genome built from complementary PacBio and Nanopore sequences alone reveals extensive linkage drag during breeding. The Plant Journal 110, pp. 572 - 588 (2022)

von Heilborn, D. H.; Nover, L.-L.; Weber, M.; Hoelzl, G.; Gisch, N.; Waldhans, C.; Mittler, M.; Kreyenschmidt, J.; Woehle, C.; Huettel, B. et al.; Lipski, A.: Polar lipid characterization and description of Chryseobacterium capnotolerans sp. nov., isolated from high CO2-containing atmosphere and emended descriptions of the genus Chryseobacterium, and the species C. balustinum, C. daecheongense, C. formosense, C. gleum, C. indologenes, C. joostei, C. scophthalmum and C. ureilyticum. International Journal of Systematic and Evolutionary Microbiology 72 (5), 005372 (2022)

Aecyo, P.; Marques, A.; Huettel, B.; Silva, A.; Esposito, T.; Ribeiro, E.; Leal, I.R.; Gagnon, E.; Souza, G.; Pedrosa-Harand, A.: Plastome evolution in the Caesalpinia group (Leguminosae) and its application in phylogenomics and populations genetics. Planta 254 (2), 27 (2021)

Costa, L.; Marques, A.; Buddenhagen, C.; Thomas, W. W.; Huettel, B.; Schubert, V.; Dodsworth, S.; Houben, A.; Souza, G.; Pedrosa-Harand, A.: Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA. Annals of Botany, mcab063 (2021)

Freire, R.; Weisweiler, M.; Guerreiro, R.; Baig, N.; Huettel, B.; Obeng-Hinneh, E.; Renner, J.; Hartje, S.; Muders, K.; Truberg, B. et al.; Rosen, A.; Prigge, V.; Bruckmueller, J.; Luebeck, J.; Stich, B.: Chromosome-scale reference genome assembly of a diploid potato clone derived from an elite variety. G3: Genes, Genomes, Genetics 11 (12), jkab330 (2021)

Garighan, J.; Dvorak, E.; Estevan, J.; Loridon, K.; Huettel, B.; Sarah, G.; Farrera, I.; Leclercq, J.; Grynberg, P.; Coiti Togawa, R. et al.; Mota do Carmo Costa, M.; Costes, E.; Andres, F.: The Identification of Small RNAs Differentially Expressed in Apple Buds Reveals a Potential Role of the Mir159-MYB Regulatory Module during Dormancy. Plants 10 (12), 2665 (2021)

Graf, J. S.; Schorn, S.; Kitzinger, K.; Ahmerkamp, S.; Woehle, C.; Huettel, B.; Schubert, C. J.; Kuypers, M. M. M.; Milucka, J.: Anaerobic endosymbiont generates energy for ciliate host by denitrification. NATURE 591 (7850), pp. 445 - 450 (2021)

Heidler von Heilborn, D.; Reinmueller, J.; Hoelzl, G.; Meier-Kolthoff, J. P.; Woehle, C.; Marek, M.; Huettel, B.; Lipski, A.: Sphingomonas aliaeris sp. nov., a new species isolated from pork steak packed under modified atmosphere. International Journal of Systematic and Evolutionary Microbiology 71 (8), 004973 (2021)

Mesny, F.; Miyauchi, S.; Thiergart, T.; Pickel, B.; Atanasova, L.; Karlsson, M.; Huettel, B.; Barry, K.W.; Haridas, S.; Chen, C. et al.; Bauer, D.; Andreopoulos, W.; Pangilinan, J.; LaButti, K.; Riley, R.; Lipzen, A.; Clum, A.; Drula, E.; Henrissat, B.; Kohler, A.; Grigoriev, I.V.; Martin, F.M.; Hacquard, S.: Genetic determinants of endophytism in the Arabidopsis root mycobiome. Nature Communications 12, 7227 (2021)

Plesken, C.; Pattar, P.; Reiss, B.; Noor, Z. N.; Zhang, L.; Klug, K.; Huettel, B.; Hahn, M.: Genetic Diversity of Botrytis cinerea Revealed by Multilocus Sequencing, and Identification of B. cinerea Populations Showing Genetic Isolation and Distinct Host Adaptation. Frontiers in Plant Science 12, 663027 (2021)

Schneider, C.; Woehle, C.; Greve, C.; D'Haese, C. A.; Wolf, M.; Hiller, M.; Janke, A.; Balint, M.; Huettel, B.: Two high-quality de novo genomes from single ethanol-preserved specimens of tiny metazoans (Collembola). GigaScience 10 (5), giab035, pp. 1 - 12 (2021)

Andrés Lalaguna, F.; Kinoshita, A.; Kalluri, N.; Fernandez, V.; Falavigna, V.; Cruz, T. M. D.; Jang, S.; Chiba, Y.; Seo, M.; Mettler-Altmann, T. et al.; Huettel, B.; Coupland, C.: The sugar transporter SWEET10 acts downstream of FLOWERING LOCUS T during floral transition of Arabidopsis thaliana. BMC Plant Biology 20 (1), 53 (2020)

Campoy, J. A.; Sun, H.-Q.; Goel, M.; Jiao, W.-B.; Folz-Donahue, K.; Wang, N.; Rubio, M.; Liu, C.; Kukat, C.; Ruiz, D. et al.; Huettel, B.; Schneeberger, K.: Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes. Genome Biology and Evolution 21 (1), 306 (2020)

Flegler, A.; Runzheimer, K.; Kombeitz, V.; Maenz, A. T.; Heidler von Heilborn, D.; Etzbach, L.; Schieber, A.; Hoelzl, G.; Huettel, B.; Woehle, C. et al.; Lipski, A.: Arthrobacter bussei sp. nov., a pink-coloured organism isolated from cheese made of cow's milk. International Journal of Systematic and Evolutionary Microbiology 70 (5), pp. 3027 - 3036 (2020)

Schneider, B.; Huettel, B.; Zuebert, C.; Kube, M.: Genetic variation, phylogenetic relationship and spatial distribution of 'Candidatus Phytoplasma ulmi' strains in Germany. Scientific Reports 10 (1), 21864 (2020)

Dantas, L. G.; Alencar, L.; Huettel, B.; Pedrosa-Harand, A.: Development of ten microsatellite markers for Alibertia edulis (Rubiaceae), a Brazilian savanna tree species. Molecular Biology Reports 46 (4), pp. 4593 - 4597 (2019)

Lambrecht, S. J.; Kanesaki, Y.; Fuss, J.; Huettel, B.; Reinhardt, R.; Steglich, C.: Interplay and Targetome of the Two Conserved Cyanobacterial sRNAs Yfr1 and Yfr2 in Prochlorococcus MED4. Scientific Reports 9, 14331 (2019)

Pucker, B.; Holtgraewe, D.; Stadermann, K. B.; Frey, K.; Huettel, B.; Reinhardt, R.; Weisshaar, B.: A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set. PLoS One 14 (5), e0216233 (2019)

Seah, B. K. B.; Antony, C. P.; Huettel, B.; Zarzycki, J.; von Borzyskowski, L. S.; Erb, T. J.; Kouris, A.; Kleiner, M.; Liebeke, M.; Dubilier, N. et al.; Gruber-Vodicka, H. R.: Sulfur-Oxidizing Symbionts without Canonical Genes for Autotrophic CO2 Fixation. MBIO 10 (3), e01112-19 (2019)

Sun, H.-Q.; Rowan, B. A.; Flood, P. J.; Brandt, R.; Fuss, J.; Hancock, A. M.; Michelmore, R. W.; Huettel, B.; Schneeberger, K.: Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination. Nature Communications 10, 4310 (2019)

Dijkhuizen, L. W.; Brouwer, P.; Bolhuis, H.; Reichart, G.-J.; Koppers, N.; Huettel, B.; Bolger, A.M.; Li, F.-W.; Cheng, S.; Liu, X. et al.; Wong, G. K.-S.; Pryer, K.; Weber, A.; Braeutigam, A.; Schluepmann, H.: Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N-2 but may denitrify. NEW PHYTOLOGIST 217 (1), pp. 453 - 466 (2018)

Hagemann, M.; Gaertner, K.; Scharnagl, M.; Bolay, P.; Lott, S. C.; Fuß, J.; Huettel, B.; Reinhardt, R.; Klaehn, S.; Hess, W. R.: Identification of the DNA methyltransferases establishing the methylome of the cyanobacterium Synechocystis sp PCC 6803. DNA RESEARCH 25 (4), pp. 343 - 352 (2018)

Hou, J.; Shi, X.; Chen, C.; Islam, M. S.; Johnson, A. F.; Kanno, T.; Huettel, B.; Yen, M.-R.; Hsu, F.-M.; Ji, T. et al.; Chen, P.-Y.; Matzke, M.; Matzke, A. J. M.; Cheng, J.; Birchler, J. A.: Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa. Proceedings of the National Academy of Sciences of the United States of America 115 (48), pp. E11321 - E11330 (2018)

Kirioukhova, O.; Shah, J. N.; Larsen, D. S.; Tayyab, M.; Mueller, N. E.; Govind, G.; Baroux, C.; Federer, M.; Gheyselinck, J.; Barrell, P. J. et al.; Ma, H.; Sprunck, S.; Huettel, B.; Wallace, H.; Grossniklaus, U.; Johnston, A.J.: Aberrant imprinting may underlie evolution of parthenogenesis. Scientific Reports 8, 10626 (2018)

Li, F.-W.; Brouwer, P.; Carretero-Paulet, L.; Cheng, S.; de Vries, J.; Delaux, P.-M.; Eily, A.; Koppers, N.; Kuo, L.-Y.; Li, Z. et al.; Simenc, M.; Small, I.; Wafula, E.; Angarita, S.; Barker, M. S.; Braeutigam, A.; dePamphilis, C.; Gould, S.; Hosmani, P. S.; Huang, Y.-M.; Huettel, B.; Kato, Y.; Liu, X.; Maere, S.; McDowell, R.; Mueller, L. A.; Nierop, K. G. J.; Rensing, S. A.; Robison, T.; Rothfels, C. J.; Sigel, E. M.; Song, Y.; Timilsena, P. R.; Van de Peer, Y.; Wang, H.; Wilhelmsson, P. K. I.; Wolf, P. G.; Xu, X.; Der, J. P.; Schluepmann, H.; Wong, G. K.-S.; Pryer, K. M.: Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nature Plants 4 (7), pp. 460 - 472 (2018)

Sun, H.-Q.; Rowan, B. A.; Flood, P. J.; Brandt, R.; Fuss, J.; Hancock, A. M.; Michelmore, R. W.; Huettel, B.; Schneeberger, K.: Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination. bioRxiv, 484022 (2018)

Wenzel, A.; Altmueller, J.; Ekici, A. B.; Popp, B.; Stueber, K.; Thiele, H.; Pannes, A.; Staubach, S.; Salido, E.; Nuernberg, P. et al.; Reinhardt, R.; Reis, A.; Rump, P.; Hanisch, F.-G.; Wolf, M. T. F.; Wiesener, M.; Huettel, B.; Beck, B. B.: Single molecule real time sequencing in ADTKD-MUC1 allows complete assembly of the VNTR and exact positioning of causative mutations. Scientific Reports 8, 4170 (2018)

Zenk, F. L.; Firmer, C.; Woehrmann, T.; da Silva, L. V.; Weising, K.; Huettel, B.; Paggi, G. M.: Development of 15 nuclear microsatellite markers in Deuterocohnia (Pitcairnioideae; Bromeliaceae) using 454 pyrosequencing. APPLICATIONS IN PLANT SCIENCES 6 (4), e1147 (2018)

Jiao, W.-B.; Garcia Accinelli, G.; Hartwig, B.; Kiefer, C.; Baker, D.; Severing, E.; Willing, E.-M.; Piednoel, M.; Woetzel, S.; Madrid-Herrero, E. et al.; Huettel, B.; Huemann, U.; Reinhardt, R.; Koch, M. A.; Swan, D.; Clavijo, B.; Coupland, G.; Schneeberger, K.: Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data. Genome Research 27 (5), pp. 778 - 786 (2017)

Schiessl, S.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R. J.: Targeted deep sequencing of flowering regulators in Brassica napus reveals extensive copy number variation. Scientific Data 4, 170013 (2017)

Schiessl, S.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R.: Post-polyploidisation morphotype diversification associates with gene copy number variation. Scientific Reports 7, 41845 (2017)

Schiessl, S. V.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R. J.: Flowering Time Gene Variation in Brassica Species Shows Evolutionary Principles. Frontiers in Plant Science 8, 1742 (2017)

Seah, B. K. B.; Schwaha, T.; Volland, J.-M.; Huettel, B.; Dubilier, N.; Gruber-Vodicka, H. R.: Specificity in diversity: single origin of a widespread ciliate-bacteria symbiosis. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 284 (1858), 20170764 (2017)

Wanderley, A. M.; Vasconcelos, S.; Huettel, B.; Machado, I. C.; Benko-Iseppon, A. M.: Development of 15 SSR polymorphic markers for the endangered Ameroglossum pernambucense Eb. Fischer, S. Vogel & A. V. Lopes (Scrophulariaceae), and cross-transferability in congeneric taxa. Brazilian Journal of Botany 40 (4), pp. 1007 - 1011 (2017)

Azevedo, H.; Azinheiro, S. G.; Munoz-Merida, A.; Castro, P. H.; Huettel, B.; Aarts, M. G. M.; Assuncao, A. G. L.: Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. GENOMICS DATA 7, pp. 256 - 258 (2016)

Blättner, S.; Das, S.; Paprotka, K.; Eilers, U.; Krischke, M.; Kretschmer, D.; Remmele, C.W.; Dittrich, M.; Müller, T.; Schuelein-Voelk, C. et al.; Hertlein, T.; Huettel, B.; Reinhardt, R.; Ohlsen, K.; Rudel, T.; Fraunholz, M.J.: Staphylococcus aureus Exploits a Non-ribosomal Cyclic Dipeptide to Modulate Survival within Epithelial Cells and Phagocytes. PLoS Pathogens 12, e1005857 (2016)

Cartolano, M.; Huettel, B.; Hartwig, B.; Reinhardt, R.; Schneeberger, K.: cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing. PLoS One 11 (6), e0157779 (2016)

Forat, S.; Huettel, B.; Reinhardt, R.; Fimmers, R.; Haidl, G.; Denschlag, D.; Olek, K.: Methylation Markers for the Identification of Body Fluids and Tissues from Forensic Trace Evidence. PLoS One 11 (2), e0147973 (2016)

Woehrmann, T.; Huettel, B.; Wagner, N.; Weising, K.: MICROSATELLITES FROM FOSTERELLA CHRISTOPHII (BROMELIACEAE) BY DE NOVO TRANSCRIPTOME SEQUENCING ON THE PACIFIC BIOSCIENCES RS PLATFORM. Applications in Plant Sciences 4 (1), 1500084 (2016)

Bai, Y.; Mueller, D. B.; Srinivas, G.; Garrido Oter, R.; Potthoff, E.; Rott, M.; Dombrowski, N.; Muench, P. C.; Spaepen, S.; Remus-Emsermann, M. et al.; Huettel, B.; McHardy, A. C.; Vorholt, J. A.; Schulze-Lefert, P.: Functional overlap of the Arabidopsis leaf and root microbiota. Nature 528 (7582), pp. 364 - 369 (2015)

Fornara, F.; de Montaigu, A.; Sánchez Villarreal, A.; Takahashi, Y.; Ver Loren van Themaat, E.; Huettel, B.; Davis, S. J.; Coupland, G.: The GI-CDF module of Arabidopsis affects freezing tolerance and growth as well as flowering. The Plant Journal 81 (5), pp. 695 - 706 (2015)