Max Planck Institute for Plant Breeding Research

Publications of P. Schulze-Lefert

All genres

Journal Article (147)

2022

Journal Article

Acevedo Garcia, J.; Walden, K.; Leissing, F.; Baumgarten, K.; Drwiega, K.; Kwaaitaal, M.; Reinstadler, A.; Freh, M.; Dong, X.; James, G. V. et al.; Baus, L. C.; Mascher, M.; Stein, N.; Schneeberger, K.; Brocke-Ahmadinejad, N.; Kollmar, M.; Schulze-Lefert, P.; Panstruga, R.: Barley Ror1 encodes a class XI myosin required for mlo-based broad-spectrum resistance to the fungal powdery mildew pathogen. The Plant Journal (2022)

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Bourceret, A.; Guan, R.; Dorau, K.; Mansfeldt, T.; Omidbakhshfard, A.; Medeiros, D. B.; Fernie, A. R.; Hofmann, J.; Sonnewald, U.; Mayer, J. et al.; Gerlach, N.; The RECONSTRUCT consortium; Bucher, M.; Garrido Oter, R.; Spaepen, S.; Schulze-Lefert, P.: Maize Field Study Reveals Covaried Microbiota and Metabolic Changes in Roots over Plant Growth. mBio, e02584-21 (2022)

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Foerderer, A.; Li, E.; Lawson, A. W.; Deng, Y.-N.; Sun, Y.; Logemann, E.; Zhang, X.; Wen, J.; Han, Z.; Chang, J. et al.; Chen, Y.; Schulze-Lefert, P.; Chai, J.: A wheat resistosome defines common principles of immune receptor channels. Nature 610, pp. 532 - 539 (2022)

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Ma, K.-W.; Ordon, J.; Schulze-Lefert, P.: Gnotobiotic Plant Systems for Reconstitution and Functional Studies of the Root Microbiota. Current Protocols 2, e362 (2022)

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Meyer, F.; Fritz, A.; Deng, Z.-L.; Koslicki, D.; Lesker, T. R.; Gurevich, A.; Robertson, G.; Alser, M.; Antipov, D.; Beghini, F. et al.; Bertrand, D.; Brito, J. J.; Brown, C. T.; Buchmann, J.; Buluc, A.; Chen, B.; Chikhi, R.; Clausen, P. T. L. C.; Cristian, A.; Dabrowski, P. W.; Darling, A. E.; Egan, R.; Eskin, E.; Georganas, E.; Goltsman, E.; Gray, M. A.; Hansen, L. H.; Hofmeyr, S.; Huang, P.; Irber, L.; Jia, H.; Jorgensen, T. S.; Kieser, S. D.; Klemetsen, T.; Kola, A.; Kolmogorov, M.; Korobeynikov, A.; Kwan, J.; LaPierre, N.; Lemaitre, C.; Li, C.; Limasset, A.; Malcher-Miranda, F.; Mangul, S.; Marcelino, V. R.; Marchet, C.; Marijon, P.; Meleshko, D.; Mende, D. R.; Milanese, A.; Nagarajan, N.; Nissen, J.; Nurk, S.; Oliker, L.; Paoli, L.; Peterlongo, P.; Piro, V. C.; Porter, J. S.; Rasmussen, S.; Rees, E. R.; Reinert, K.; Renard, B.; Robertsen, E. M.; Rosen, G. L.; Ruscheweyh, H.-J.; Sarwal, V.; Segata, N.; Seiler, E.; Shi, L.; Sun, F.; Sunagawa, S.; Sorensen, S. J.; Thomas, A.; Tong, C.; Trajkovski, M.; Tremblay, J.; Uritskiy, G.; Vicedomini, R.; Wang, Z.; Wang, Z.; Wang, Z.; Warren, A.; Willassen, N.; Yelick, K.; You, R.; Zeller, G.; Zhao, Z.; Zhu, S.; Zhu, J.; Garrido-Oter, R.; Gastmeier, P.; Hacquard, S.; Haeussler, S.; Khaledi, A.; Maechler, F.; Mesny, F.; Radutoiu, S.; Schulze-Lefert, P.; Smit, N.; Strowig, T.; Bremges, A.; Sczyrba, A.; McHardy, A. C.: Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods 19 (4), pp. 429 - 440 (2022)

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Saur, , I. M. L.; Lawson, A. W.; Schulze-Lefert, P.: Buy one, get two. Nature Plants 8, pp. 100 - 101 (2022)

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Yu, D.; Song, W.; Tan, E. Y. J.; Liu, L.; Cao, Y.; Jirschitzka, J.; Li, E.; Logemann, E.; Xu, C.; Huang, S. et al.; Jia, A.; Chang, X.; Han, Z.; Wu, B.; Schulze-Lefert, P.; Chai, J.: TIR domains of plant immune receptors are 2 ',3 '-cAMP/cGMP synthetases mediating cell death. Cell 185 (13), pp. 2370 - 2386 (2022)

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Yu, D.; Song, W.; Tan, E. Y. J.; Liu, L.; Cao, Y.; Jirschitzka, J.; Li, E.; Logemann, E.; Xu, C.; Huang, S. et al.; Jia, A.; Chang, X.; Han, Z.; Wu, B.; Schulze-Lefert, P.; Chai, J.: TIR domains of plant immune receptors are 2,3-cAMP/cGMP synthetases mediating cell death. Cell 185, pp. 2370 - 2386.e18 (2022)

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2021

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Bauer, S.; Yu, D.; Lawson, A. W.; Saur, I. M. L.; Frantzeskakis, L.; Kracher, B.; Logemann, E.; Chai, J.; Maekawa, T.; Schulze-Lefert, P.: The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold. PLoS Pathogens 17 (2), e1009223 (2021)

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Durán, P.; Reinstädler, A.; Rajakrut, A.; Hashimoto, M.; Garrido Oter, R.; Schulze-Lefert, P.; Panstruga, R.: A fungal powdery mildew pathogen induces extensive local and marginal systemic changes in the Arabidopsis thaliana microbiota. Environmental Microbiology 23 (10), pp. 6292 - 6308 (2021)

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Durán, P.; Reinstaedler, A.; Rajakrut, A.; Hashimoto, M.; Garrido Oter, R.; Schulze-Lefert, P.; Panstruga, R.: A fungal powdery mildew pathogen induces extensive local and marginal systemic changes in the Arabidopsis thaliana microbiota. SI 23 (10), pp. 6292 - 6308 (2021)

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Emonet, A.; Zhou, F.; Vacheron, J.; Heiman, C. M.; Tendon, V. D.; Ma, K.-W.; Schulze-Lefert, P.; Keel, C.; Geldner, N.: Spatially Restricted Immune Responses Are Required for Maintaining Root Meristematic Activity upon Detection of Bacteria. Current Biology 31 (5) (2021)

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Kremer, J. M.; Sohrabi, R.; Paasch, B. C.; Rhodes, D.; Thireault, C.; Schulze-Lefert, P.; Tiedje, J. M.; He, S. Y.: Peat-based gnotobiotic plant growth systems for Arabidopsis microbiome research. Nature Protocols 16, pp. 2450 - 2470 (2021)

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Ma, K.-W.; Niu, Y.; Jia, Y.; Ordon, J.; Copeland, C.; Emonet, A.; Geldner, N.; Guan, R.; Stolze, S. C.; Nakagami, H. et al.; Garrido-Oter, R.; Schulze-Lefert, P.: Coordination of microbe–host homeostasis by crosstalk with plant innate immunity. Nature Plants (2021)

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Saur, I. M. L.; Panstruga, R.; Schulze-Lefert, P.: NOD-like receptor-mediated plant immunity: from structure to cell death. Nature Reviews Immunology 21, pp. 305 - 318 (2021)

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Schuetz, V.; Frindte, K.; Cui, J.; Zhang, P.; Hacquard, S.; Schulze-Lefert, P.; Knief, C.; Schulz, M.; Doermann, P.: Differential Impact of Plant Secondary Metabolites on the Soil Microbiota. Frontiers in Microbiology 12, 666010 (2021)

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Winkelmueller, T. M.; Entila, F.; Anver, S.; Piasecka, A.; Song, B.; Dahms, E.; Sakakibara, H.; Gan, X.; Kułak, K.; Sawikowska, A. et al.; Krajewski, P.; Garrido-Oter, R.; Tsiantis, M.; Fukushima, K.; Schulze-Lefert, P.; Laurent, S.; Bednarek, P.; Tsuda, K.: Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species. The Plant Cell, koab073 (2021)

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Wippel, K.; Tao, K.; Niu, Y.; Zgadzaj, R. L.; Kiel, N.; Guan, R.; Dahms, E.; Zhang, P.; Jensen, D. B.; Logemann, E. et al.; Radutoiu, S.; Schulze-Lefert, P.; Garrido Oter, R.: Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota. Nature Microbiology (2021)

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Zhang, J.; Liu, Y.-X.; Guo, X.; Qin, Y.; Garrido-Oter, R.; Schulze-Lefert, P.; Bai, Y.: High-throughput cultivation and identification of bacteria from the plant root microbiota. Nature Protocols 16 (2), pp. 988 - 1012 (2021)

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2020

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Copeland, C.; Schulze-Lefert, P.: Leaf-derived bacterial communities adapt to the local environment. Proceedings of the National Academy of Sciences of the United States of America 117 (2), pp. 808 - 810 (2020)

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Frerigmann, H.; Piotrowski, M.; Lemke, R.; Bednarek, P.; Schulze-Lefert, P.: A network of phosphate starvation and immune-related signaling and metabolic pathways controls the interaction between Arabidopsis thaliana and the beneficial fungus Colletotrichum tofieldiae. Molecular Plant-Microbe Interactions (2020)

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Harbort, C. J.; Hashimoto, M.; Haruhiko, I.; Schulze-Lefert, P.: A gnotobiotic growth assay for Arabidopsis root microbiota reconstitution under iron limitation. STAR Protocols 1 (3), 100226 (2020)

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Harbort, C. J.; Hashimoto, M.; Inoue, H.; Niu, Y.; Guan, R.; Rombolà, A. D.; Kopriva, S.; Voges, M. J. E. E. E.; Sattely, E. S.; Garrido-Oter, R. et al.; Schulze-Lefert, P.: Root-secreted coumarins and the microbiota interact to improve iron nutrition in Arabidopsis. Cell Host & Microbe 28, pp. 825 - 837 (2020)

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Hematy, K.; Lim, M.; Cherk, C.; Pislewska-Bednarek, M.; Sanchez-Rodriguez, C.; Stein, M.; Fuchs, R.; Klapprodt, C.; Lipka, V.; Molina, A. et al.; Grill, E.; Schulze-Lefert, P.; Bednarek, P.; Somerville, S.: Moonlighting function of Phytochelatin synthase1 in extracellular defense against fungal pathogens. Plant Physiology (2020)

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Ma, S.; Lapin, D.; Liu, L.; Sun, Y.; Song, W.; Zhang, X.; Logemann, E.; Yu, D.; Wang, J.; Jirschitzka, J. et al.; Han, Z.; Schulze-Lefert, P.; Parker, J. E.; Chai, J.: Direct pathogen-induced assembly of an NLR immune receptor complex to form a holoenzyme. Science Magazine 370 (6521), eabe3069 (2020)

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Mahdi, L.; Huang, M.; Zhang, X.; Nakano, R. T.; Kopp, L. B.; Saur, I. M. L.; Jacob, F.; Kovacova, V.; Lapin, D.; Parker, J.E. et al.; Murphy, J. M.; Hofmann, K.; Schulze-Lefert, P.; Chai, J.; Maekawa, T.: Innate immune signalling by plant mixed lineage kinase domain-like proteins. Cell Host & Microbe (2020)

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Thiergart, T.; Durán, P.; Ellis, T.; Vannier, N.; Garrido-Oter, R.; Kemen, E.; Roux, F.; Alonso-Blanco, C.; Agren, J.; Schulze-Lefert, P. et al.; Hacquard, S.: Root microbiota assembly and adaptive differentiation among European Arabidopsis populations. Nature Ecology & Evolution 4 (1), pp. 122 - 131 (2020)

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2019

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Berens, M. L.; Wolinska, K. W.; Spaepen, S.; Ziegler, J.; Nobori, T.; Nair, A.; Krüler, K.; Winkelmueller, T. M.; Wang, Y.; Mine, A. et al.; Becker, D.; Garrido-Oter, R.; Schulze-Lefert, P.; Tsuda, K.: Balancing trade-offs between biotic and abiotic stress responses through leaf age-dependent variation in stress hormone cross-talk. Proceedings of the National Academy of Sciences of the United States of America 116, pp. 2364 - 2373 (2019)

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Maekawa, T.; Kracher, B.; Saur, I. M.-L.; Maekawa-Yoshikawa, M.; Kellner, R.; Pankin, A.; von Korff, M.; Schulze-Lefert, P.: Subfamily-specific specialization of RGH1/MLA immune receptors in wild barley. Molecular Plant-Microbe Interactions 32 (1), pp. 107 - 119 (2019)

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Saur, I. M. L.; Bauer, S.; Kracher, B.; Lu, X.; Frantzeskakis, L.; Müller, M. C.; Sabelleck, B.; Kümmel, F.; Panstruga, R.; Maekawa, T. et al.; Schulze-Lefert, P.: Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism. eLife 8, e44471 (2019)

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Saur, I. M. L.; Bauer, S.; Lu, X.; Schulze-Lefert, P.: A cell death assay in barley and wheat protoplasts for identification and validation of matching pathogen AVR effector and plant NLR immune receptors. PLANT METHODS 15 (1), 118 (2019)

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Thiergart, T.; Zgadzaj, R.; Bozsóki, Z.; Garrido-Oter, R.; Radutoiu, S.; Schulze-Lefert, P.: Lotus japonicus symbiosis genes impact microbial interactions between symbionts and multikingdom commensal communities. mBio 10, e01833-19 (2019)

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Uemura, T.; Nakano, R. T.; Takagi, J.; Wang, Y.; Kramer, K.; Finkemeier, I.; Nakagami, H.; Tsuda, K.; Ueda, T.; Schulze-Lefert, P. et al.; Nakano, A.: A Golgi-Released Subpopulation of the Trans-Golgi Network Mediates Protein Secretion in Arabidopsis. Plant Physiology 179 (2), pp. 519 - 532 (2019)

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Voges, M. J. E. E. E.; Bai, Y.; Schulze-Lefert, P.; Sattely, E. S.: Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome. Proceedings of the National Academy of Sciences of the United States of America 116 (25), pp. 12558 - 12565 (2019)

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Wippel, K.; Schulze-Lefert, P.; Garrido Oter, R.: Rhizobien in der Pflanzenmikrobiota: Evolution der Wurzelknöllchensymbiose und Funktionen der Mikrobiota für den Pflanzenwirt. Biologie in unserer Zeit 49 (6), pp. 426 - 434 (2019)

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2018

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Durán, P.; Thiergart, T.; Garrido-Oter, R.; Agler, M.T.; Kemen, E.; Schulze-Lefert, P.; Hacquard, S.: Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival. Cell 175 (4), pp. 973 - + (2018)

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Frantzeskakis, L.; Kracher, B.; Kusch, S.; Maekawa-Yoshikawa, M.; Bauer, S.; Pedersen, C.; Spanu, P.; Maekawa, T.; Schulze-Lefert, P.; Panstruga, R.: Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen. BMC Genomics 19, 381 (2018)

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Garrido Oter, R.; Nakano, R. T.; Dombrowski, N.; Ma, K.-W.; AgBiome Team, T.; McHardy, A.; Schulze-Lefert, P.: Modular traits of the Rhizobiales root microbiota and their evolutionary relationship with symbiotic rhizobia. Cell Host & Microbe 24, pp. 155 - 167 (2018)

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Jacob, F.; Kracher, B.; Mine, A.; Seyfferth, C.; Blanvillain-Baufumé, S.; Parker, J. E.; Tsuda, K.; Schulze-Lefert, P.; Maekawa, T.: A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytologist 217 (4), pp. 1667 - 1680 (2018)

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Pislewska-Bednarek, M.; Nakano, R. T.; Hiruma, K.; Pastorczyk, M.; Sanchez-Vallet, A.; Singkaravanit-Ogawa, S.; Ciesiolka, D.; Takano, Y.; Molina, A.; Schulze-Lefert, P. et al.; Bednarek, P.: Glutathione Transferase U13 Functions in Pathogen-Triggered Glucosinolate Metabolism. Plant Physiology 176 (1), pp. 538 - 551 (2018)

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Robbins, C.; Thiergart, T.; Hacquard, S.; Garrido Oter, R.; Gans, W.; Peiter, E.; Schulze-Lefert, P.; Spaepen, S.: Root-associated bacterial and fungal community profiles of Arabidopsis thaliana are robust across contrasting soil P levels. Phytobiomes 2 (1), pp. 24 - 34 (2018)

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Sopeña-Torres, S.; Jorda, L.; Sanchez-Rodriguez, C.; Miedes, E.; Escudero, V.; Swamy, S.; Lopez, G.; Pislewska-Bednarek, M.; Lassowskat, I.; Lee, J. et al.; Gu, Y.; Haigis, S.; Alexander, D.; Pattathil, S.; Muñoz-Barrios, A.; Bednarek, P.; Somerville, S.; Schulze-Lefert, P.; Hahn, M.; Scheel, D.; Molina, A.: YODA MAP3K kinase regulates plant immune responses conferring broad-spectrum disease resistance. New Phytologist 218, pp. 661 - 680 (2018)

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Wibowo, A.; Becker, C.; Durr, J.; Price, J.; Spaepen, S.; Hilton, S.; Putra, H.; Papareddy, R.; Saintain, Q.; Harvey, S. et al.; Bending, G. D.; Schulze-Lefert, P.; Weigel, D.; Gutierrez-Marcos, J.: Partial maintenance of organ-specific epigenetic marks during plant asexual reproduction leads to heritable phenotypic variation. Proceedings of the National Academy of Sciences of the United States of America 115 (39), pp. E9145 - E9152 (2018)

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2017

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Dombrowski, N.; Schlaeppi, K.; Agler, M.T.; Hacquard, S.; Kemen, E.; Garrido Oter, R.; Wunder, J.; Coupland, G.; Schulze-Lefert, P.: Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time. The ISME Journal 11, 10.1038/ismej.2016.109, pp. 43 - 55 (2017)

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Fukunaga, S.; Sogame, M.; Hata, M.; Singkaravanit-Ogawa, S.; Piślewska-Bednarek, M.; Onozawa-Komori, M.; Nishiuchi, T.; Hiruma, K.; Saitoh, H.; Terauchi, R. et al.; Kitakura, S.; Inoue, Y.; Bednarek, P.; Schulze-Lefert, P.; Takano, Y.: Dysfunction of Arabidopsis MACPF domain protein activates programmed cell death via tryptophan metabolism in MAMP-triggered immunity. The Plant Journal 89, pp. 381 - 393 (2017)

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Hacquard, S.; Spaepen, S.; Garrido-Oter, R.; Schulze-Lefert, P.: Interplay Between Innate Immunity and the Plant Microbiota. Annual Review of Phytopathology (55), pp. 565 - 589 (2017)

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Maekawa, T.; Schulze-Lefert, P.: Caught in the jump. Science Magazine 357, pp. 31 - 32 (2017)

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Nakano, R. T.; Piślewska-Bednarek, M.; Yamada, K.; Edger , P. P.; Miyahara, M.; Kondo, M.; Böttcher, C.; Mori, M.; Nishimura, M.; Schulze-Lefert, P. et al.; Hara-Nishimura, I.; Bednarek, P.: PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana. The Plant Journal 89 (2), pp. 201 - 220 (2017)

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Sczyrba, A.; Hofmann, P.; Belmann, P.; Koslicki, D.; Janssen, S.; Droge, J.; Gregor, I.; Majda, S.; Fiedler, J.; Dahms, E. et al.; Bremges, A.; Fritz, A.; Garrido-Oter, R.; Jorgensen, T. S.; Shapiro, N.; Blood, P. D.; Gurevich, A.; Bai, Y.; Turaev, D.; DeMaere, M. Z.; Chikhi, R.; Nagarajan, N.; Quince, C.; Meyer, F.; Balvociute, M.; Hansen, L. H.; Sorensen, S. J.; Chia, B. K. H.; Denis, B.; Froula, J. L.; Wang, Z.; Egan, R.; Don Kang, D.; Cook, J. J.; Deltel, C.; Beckstette, M.; Lemaitre, C.; Peterlongo, P.; Rizk, G.; Lavenier, D.; Wu, Y.-W.; Singer, S. W.; Jain, C.; Strous, M.; Klingenberg, H.; Meinicke, P.; Barton, M. D.; Lingner, T.; Lin, H.-H.; Liao, Y.-C.; Silva, G. G. Z.; Cuevas, D. A.; Edwards, R. A.; Saha, S.; Piro, V. C.; Renard, B. Y.; Pop, M.; Klenk, H.-P.; Goker, M.; Kyrpides, N. C.; Woyke, T.; Vorholt, J. A.; Schulze-Lefert, P.; Rubin, E. M.; Darling, A. E.; Rattei, T.; McHardy, A. C.: Critical Assessment of Metagenome Interpretation — a benchmark of metagenomics software. Nature methods 14, pp. 1063 - 1071 (2017)

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2016

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Hacquard, S.; Kracher, B.; Hiruma, K.; Muech, P. C.; Garrido Oter, R.; Thon, M. R.; Weimann, A.; Damm, U.; Dallery, J.-F.; Hainaut, M. et al.; Henrissat, B.; Lespinet, O.; Sacristan, S.; Ver Loren van Themaat, E.; Kemen, E.; McHardy, A. C.; Schulze-Lefert, P.; O'Connell, R. J.: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi. Nature Communications 7, 11362 (2016)

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