Current PhD Students

Publications of J. E. Parker

Journal Article (118)

2023
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Feehan, J. M.; Wang, J.; Sun, X.; Choi, J.; Ahn, H. K.; Ngou, B. P.; Parker, J. E.; Jones, J. D.: Oligomerization of a plant helper NLR requires cell-surface and intracellular immune receptor activation. Proceedings of the National Academy of Sciences of the United States of America 120 (11), e2210406120 (2023)
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Johanndrees, O.; Baggs, E. L.; Uhlmann, C.; Locci, F.; Laessle, H.; Melkonian, K.; Käufer, K.; Dongus, J. A.; Nakagami, H.; Krasileva, K. V. et al.; Parker, J. E.; Lapin, D.: Variation in plant Toll/Interleukin-1 receptor domain protein dependence on ENHANCED DISEASE SUSCEPTIBILITY 1. Plant Physiology 191, kiac480, pp. 626 - 642 (2023)
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Prautsch, J.; Erickson, J. L.; Oezyuerek, S.; Gormanns, R.; Franke, L.; Lu, Y.; Marx, J.; Niemeyer, F.; Parker, J. E.; Stuttmann, J. et al.; Schattat, M. H.: Effector XopQ-induced stromule formation in Nicotiana benthamiana depends on ETI signaling components ADR1 and NRG1. Plant Physiology 191, pp. 161 - 176 (2023)
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2022
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Dongus, J. A.; Bhandari, D. D.; Penner, E.; Lapin, D.; Stolze, S. C.; Harzen, A.; Patel, M.; Archer, L.; Dijkgraaf, L.; Shah, J. et al.; Nakagami, H.; Parker, J. E.: Cavity surface residues of PAD4 and SAG101 contribute to EDS1 dimer signaling specificity in plant immunity. The Plant Journal 110 (5), pp. 1415 - 1432 (2022)
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Huang, S.; Jia, A.; Song, W.; Hessler, G.; Meng, Y.; Sun, Y.; Xu, L.; Laessle, H.; Jirschitzka, J.; Ma, S. et al.; Xiao, Y.; Yu, D.; Hou, J.; Liu, R.; Sun, H.; Liu, X.; Han, Z.; Chang, J.; Parker, J. E.; Chai, J.: Identification and receptor mechanism of TIR-catalyzed small molecules in plant immunity. Science (2022)
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Jia, A.; Huang, S.; Song, W.; Wang, J.; Meng, Y.; Sun, Y.; Xu, L.; Laessle, H.; Jirschitzka, J.; Hou, J. et al.; Zhang, T.; Yu, W.; Hessler, G.; Li, E.; Ma, S.; Yu, D.; Gebauer, J.; Baumann, U.; Liu, X.; Han, Z.; Chang, J.; Parker, J. E.; Chai, J.: TIR-catalyzed ADP-ribosylation reactions produce signaling molecules for plant immunity. Science (2022)
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Lapin, D.; Johanndrees, O.; Wu, Z.; Li, X.; Parker, J. E.: Molecular innovations in plant TIR-based immunity signaling. Plant Cell 34, pp. 1479 - 1496 (2022)
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Loo, E. P. -.; Tajima, Y.; Yamada, K.; Kido, S.; Hirase, T.; Ariga, H.; Fujiwara, T.; Tanaka, K.; Taji, T.; Somssich, I. E. et al.; Parker, J. E.; Saijo, Y.: Recognition of Microbe- and Damage-Associated Molecular Patterns by Leucine-Rich Repeat Pattern Recognition Receptor Kinases Confers Salt Tolerance in Plants. Molecular Plant-Microbe Interactions 35 (7), pp. 554 - 566 (2022)
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Parker, J. E.; Hessler, G.; Cui, H.: A new biochemistry connecting pathogen detection to induced defense in plants. New Phytologist 234 (3), pp. 819 - 826 (2022)
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Platre, M. P.; Satbhai, S. B.; Brent, L.; Gleason, M. F.; Cao, M.; Grison, M.; Glavier, M.; Zhang, L.; Gaillochet, C.; Goeschl, C. et al.; Giovannetti, M.; Enugutti, B.; Neveu, J.; von Reth, M.; Alcázar, R.; Parker, J.; Vert, G.; Bayer, E.; Busch, W.: The receptor kinase SRF3 coordinates iron-level and flagellin dependent defense and growth responses in plants. Nature Communications 13 (1), 4445 (2022)
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Zoennchen, J.; Gantner, J.; Lapin, D.; Barthel, K.; Eschen-Lippold, L.; Erickson, J. L.; Villanueva, S. L.; Zantop, S.; Kretschmer, C.; Joosten, M. H. A. J. et al.; Parker, J. E.; Guerois, R.; Stuttmann, J.: EDS1 complexes are not required for PRR responses and execute TNL-ETI from the nucleus in Nicotiana benthamiana. New Phytologist 236 (6), pp. 2249 - 2264 (2022)
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2021
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Bruessow, F.; Bautor, J.; Hoffmann, G.; Yildiz, I.; Zeier, J.; Parker, J. E.: Natural variation in temperature-modulated immunity uncovers transcription factor bHLH059 as a thermoresponsive regulator in Arabidopsis thaliana. PLoS Genetics 17 (1), e1009290 (2021)
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Chaudhry, V.; Runge, P.; Sengupta, P.; Doehlemann, G.; Parker, J. E.; Kemen, E.: Shaping the leaf microbiota: plant-microbe-microbe interactions. Special Issue 72 (1), pp. 36 - 56 (2021)
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Dongus, J. A.; Parker, J. E.: At the nexus of intracellular and surface receptor immunity. Current Opinion in Plant Biology 32, 102039 (2021)
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Loo, E.; Tajima, Y.; Yamada, K.; Kido, S.; Hirase, T.; Ariga, H.; Fujiwara, T.; Tanaka, K.; Taji, T.; Somssich, I. et al.; Parker, J. E.; Saijo, Y.: Recognition of microbe/damage-associated molecular patterns by leucine-rich repeat pattern recognition receptor kinases confers salt tolerance in plants. Molecular Plant-Microbe Interactions (2021)
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Mahdi, L.; Miyauchi, S.; Uhlmann, C.; Garrido-Oter, R.; Langen, G.; Wawra, S.; Niu, Y.; Guan, R.; Guan, R.; Robertson-Albertyn, S. et al.; Bulgarelli, D.; Parker, J. E.; Zuccaro, A.: The fungal root endophyte Serendipita vermifera displays inter-kingdom synergistic beneficial effects with the microbiota in Arabidopsis thaliana and barley. The ISME Journal (2021)
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Parker, J.; Hessler, G.; Cui, H.: A new biochemistry connecting pathogen detection to induced defense in plants. New Phytologist (2021)
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Pruitt, R. N.; Locci, F.; Wanke, F.; Zhang, L.; Saile, S. C.; Joe, A.; Karelina, D.; Hua, C.; Fröhlich, K.; Wan, W.-L. et al.; Hu, M.; Rao, S.; Stolze, S. C.; Harzen, A.; Gust, A. A.; Harter, K.; Joosten, M. H. A. J.; Thomma, B. P. H. J.; Zhou, J.-M.; Dangl, J. L.; Weigel, D.; Nakagami, H.; Oecking, C.; Kasmi, F. E.; Parker, J. E.; Nürnberger, T.: The EDS1–PAD4–ADR1 node mediates Arabidopsis pattern-triggered immunity. Nature (2021)
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Xing, Y.; Xu, N.; Bhandari, D. D.; Lapin, D.; Sun, X.; Luo, X.; Wang, Y.; Cao, J.; Wang, H.; Coaker, G. et al.; Parker, J. E.; Liu, J.: Bacterial effector targeting of a plant iron sensor facilitates iron acquisition and pathogen colonization. The Plant Cell, koab075 (2021)
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Zhao, C.; Tang, Y.; Wang, J.; Zeng, Y.; Sun, H.-Q.; Zheng, Z.; Su, R.; Schneeberger, K.; Parker, J. E.; Cui, H.: A mis-regulated cyclic nucleotide-gated channel mediates cytosolic calcium elevation and activates immunity in Arabidopsis. New Phytologist 230 (3), pp. 1078 - 1094 (2021)
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2020
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Dongus, J. A.; Bhandari, D. D.; Patel, M.; Archer, L.; Dijkgraaf, L.; Deslandes, L.; Shah, J.; Parker, J. E.: Arabidopsis PAD4 lipase-like domain is sufficient for resistance to green peach aphid. Molecular Plant-Microbe Interactions 33, pp. 328 - 335 (2020)
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Harvey, S.; Kumari, P.; Lapin, D.; Griebel, T.; Hickman, R.; Guo, W.; Zhang, R.; Parker, J.; Beynon, J.; Denby, K. et al.; Steinbrenner, J.: Downy Mildew effector HaRxL21 interacts with the transcriptional repressor TOPLESS to promote pathogen susceptibility. PLoS Pathogens 16 (8), e1008835 (2020)
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Lapin, D.; Bhandari, D. D.; Parker, J.: Multidimensional gene regulatory landscape of a bacterial pathogen in plants. Annual Review of Phytopathology 58, pp. 253 - 276 (2020)
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Ma, S.; Lapin, D.; Liu, L.; Sun, Y.; Song, W.; Zhang, X.; Logemann, E.; Yu, D.; Wang, J.; Jirschitzka, J. et al.; Han, Z.; Schulze-Lefert, P.; Parker, J. E.; Chai, J.: Direct pathogen-induced assembly of an NLR immune receptor complex to form a holoenzyme. Science Magazine 370 (6521), eabe3069 (2020)
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Neubauer, M.; Serrano, I.; Rodibaugh, N.; Bhandari, D. D.; Bautor, J.; Parker, J. E.; Innes, R. W.: Arabidopsis EDR1 Protein Kinase Regulates the Association of EDS1 and PAD4 to Inhibit Cell Death. Molecular Plant-Microbe Interactions 33, pp. 693 - 703 (2020)
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2019
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Bailey-Serres, J.; Parker, J. E.; Ainsworth, E. A.; Oldroyd, G. E. D.; Schroeder, J. I.: Genetic strategies for improving crop yields. Nature 575, pp. 109 - 118 (2019)
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Bhandari, D. D.; Lapin, D.; Kracher, B.; von Born, P.; Bautor, J.; Niefind, K.; Parker, J. E.: An EDS1 heterodimer signalling surface enforces timely reprogramming of immunity genes in Arabidopsis. Nature Communications 10, 772 (2019)
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Deremetz, A.; Le Roux, C.; Idir, Y.; Brousse, C.; Agorio, A.; Gy, I.; Parker, J. E.; Bouché, N.: Antagonistic actions of FPA and IBM2 regulate transcript processing from genes containing heterochromatin. Plant Physiology (2019)
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Lapin, D.; Kovacova, V.; Sun, X.; Dongus, J. A.; Bhandari, D.; von Born, P.; Bautor, J.; Guarneri, N.; Rzemieniewski, J.; Stuttmann, J. et al.; Beyer, A.; Parker, J. E.: A Coevolved EDS1-SAG101-NRG1 Module Mediates Cell Death Signaling by TIR-Domain Immune Receptors. The Plant Cell (2019)
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Parker, J.: Early Leads to Mechanisms of Plant Cultivar-Specific Disease Resistance. Plant Cell 31 (7), pp. 1410 - 1411 (2019)
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Voss, M.; Toelzer, C.; Bhandari, D. D.; Parker, J. E.; Niefind, K.: Arabidopsis immunity regulator EDS1 in a PAD4/SAG101-unbound form is a monomer with an inherently inactive conformation. Journal of Structural Biology 208, 107390 (2019)
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2018
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Atanasov, K. E.; Liu, C.; Erban, A.; Kopka, J.; Parker, J. E.; Alcázar, R.: NLR mutations suppressing immune hybrid incompatibility and their effects on disease resistance. Plant Physiology 177, pp. 1152 - 1169 (2018)
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Cui, H.; Qiu, J.; Zhou, Y.; Bhandari, D. D.; Zhao, C.; Bautor, J.; Parker, J. E.: Antagonism of Transcription Factor MYC2 by EDS1/PAD4 Complexes Bolsters Salicylic Acid Defense in Arabidopsis Effector-Triggered Immunity. Molecular Plant 11 (8), pp. 1053 - 1066 (2018)
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Jacob, F.; Kracher, B.; Mine, A.; Seyfferth, C.; Blanvillain-Baufumé, S.; Parker, J. E.; Tsuda, K.; Schulze-Lefert, P.; Maekawa, T.: A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytologist 217 (4), pp. 1667 - 1680 (2018)
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Joglekar, S.; Suliman, M. N. S.; Bartsch, M.; Halder, V.; Maintz, J.; Bautor, J.; Zeier, J.; Parker, J. E.; Kombrink, E.: Chemical Activation of EDS1/PAD4 Signaling Leading to Pathogen Resistance in Arabidopsis. Plant and Cell Physiology 59 (8), pp. 1592 - 1607 (2018)
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2017
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Ariga, H.; Katori, T.; Tsuchimatsu, T.; Hirase, T.; Tajima, Y.; Parker, J. E.; Alcázar, R.; Koornneef, M.; Hoekenga, O.; Lipka, A. E. et al.; Gore, M. A.; Sakakibara, H.; Kojima, M.; Kobayashi, Y.; Iuchi, S.; Kobayashi, M.; Shinozaki, K.; Sakata, Y.; Hayashi, T.; Saijo, Y.; Taji, T.: NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis. Nature Plants 3, 17072 (2017)
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Cui, H.; Gobbato, E.; Kracher, B.; Qiu, J.; Bautor, J.; Parker, J. E.: A core function of EDS1 with PAD4 is to protect the salicylic acid defense sector in Arabidopsis immunity. New Phytologist 213, 10.1111/nph.14302, pp. 1802 - 1817 (2017)
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Riedlmeier, M.; Ghirardo, A.; Wenig, M.; Knappe, C.; Koch, K.; Georgii, E.; Dey, S.; Parker, J. E.; Schnitzler , J. P.; Vlot, C. A.: Monoterpenes support systemic acquired resistance within and between plants. The Plant Cell 29,6, pp. 1440 - 1459 (2017)
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2016
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Kunz, H.-H.; Park, J.; Mevers, E.; Acevedo Garcia, J.; Highhouse, S.; Gerwick, W. H.; Parker, J. E.; Schroeder, J. I.: Small Molecule DFPM Derivative-Activated Plant Resistance Protein Signaling in Roots Is Unaffected by EDS1 Subcellular Targeting Signal and Chemical Genetic Isolation of victr R-Protein Mutants. PLoS One 11 (5), e0155937 (2016)
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Rhee, S. Y.; Parker, J. E.; Mockler, T. C.: A glimpse into the future of genome-enabled plant biology from the shores of Cold Spring Harbor. GENOME BIOLOGY 17, 3 (2016)
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Stuttmann, J.; Peine, N.; Garcia, A. V.; Wagner, C.; Choudhury, S. R.; Wang, Y.; James, G. V.; Griebel, T.; Alcázar, R.; Tsuda, K. et al.; Schneeberger, K.; Parker, J. E.: Arabidopsis thaliana DM2h (R8) within the Landsberg RPP1-like Resistance Locus Underlies Three Different Cases of EDS1-Conditioned Autoimmunity. PLoS Genetics 12 (4), e1005990 (2016)
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2015
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Cui, H.; Tsuda, K.; Parker, J. E.: Effector-Triggered Immunity: From Pathogen Perception to Robust Defense. ANNUAL REVIEW OF PLANT BIOLOGY, VOL 66, pp. 487 - 511 (2015)
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Le Roux, C.; Huet, G.; Jauneau, A.; Camborde, L.; Tremousaygue, D.; Kraut, A.; Zhou, B.; Levaillant, M.; Adachi, H.; Yoshioka, H. et al.; Raffaele, S.; Berthome, R.; Coute, Y.; Parker, J. E.; Deslandes, L.: A Receptor Pair with an Integrated Decoy Converts Pathogen Disabling of Transcription Factors to Immunity. Cell 161 (5), pp. 1074 - 1088 (2015)
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Makandar, R.; Nalam, V. J.; Chowdhury, Z.; Sarowar, S.; Klossner, G.; Lee, H.; Burdan, D.; Trick, H. N.; Gobbato, E.; Parker, J. E. et al.; Shah, J.: The Combined Action of ENHANCED DISEASE SUSCEPTIBILITY1, PHYTOALEXIN DEFICIENT4, and SENESCENCE-ASSOCIATED101 Promotes Salicylic Acid-Mediated Defenses to Limit Fusarium graminearum Infection in Arabidopsis thaliana. Molecular Plant-Microbe Interactions 28 (8), pp. 943 - 953 (2015)
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2014
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Alcazar, R.; von Reth, M.; Bautor, J.; Chae, E.; Weigel, D.; Koornneef, M.; Parker, J.: Analysis of a Plant Complex Resistance Gene Locus Underlying Immune-Related Hybrid Incompatibility and Its Occurrence in Nature. PLoS Genetics 10 (12), e1004848 (2014)
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Breitenbach, H. H.; Wenig, M.; Wittek, F.; Jorda, L.; Maldonado-Alconada, A. M.; Sarioglu, H.; Colby, T.; Knappe, C.; Bichlmeier, M.; Pabst, E. et al.; Mackey, D.; Parker, J. E.; Vlot, A. C.: Contrasting Roles of the Apoplastic Aspartyl Protease APOPLASTIC, ENHANCED DISEASE SUSCEPTIBILITY1-DEPENDENT1 and LEGUME LECTIN-LIKE PROTEIN1 in Arabidopsis Systemic Acquired Resistance. Plant Physiology 165 (2), pp. 791 - 809 (2014)
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Carstens, M.; McCrindle, T. K.; Adams, N.; Diener, A.; Guzha, D. T.; Murray, S. L.; Parker, J. E.; Denby, K. J.; Ingle, R. A.: Increased Resistance to Biotrophic Pathogens in the Arabidopsis Constitutive Induced Resistance 1 Mutant Is EDS1 and PAD4-Dependent and Modulated by Environmental Temperature. PLoS One 9 (10), e109853 (2014)
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Doehlemann, G.; Requena, N.; Schaefer, P.; O'Connell, R.; Parker, J. E.: Reprogramming of plant cells by filamentous plant-colonizing microbes. New Phytologist 204 (4), DOI: 10.1111/nph.12938, pp. 803 - 814 (2014)
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Gloggnitzer, J.; Akimcheva, S.; Srinivasan, A.; Kusenda, B.; Riehs, N.; Stampfl, H.; Bautor, J.; Dekrout, B.; Jonak, C.; Jimenez-Gomez, J. M. et al.; Parker, J. E.; Riha, K.: Nonsense-Mediated mRNA Decay Modulates Immune Receptor Levels to Regulate Plant Antibacterial Defense. CELL HOST & MICROBE 16 (3), pp. 376 - 390 (2014)
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Griebel, T.; Maekawa, T.; Parker, J. E.: NOD-like receptor cooperativity in effector-triggered immunity. Trends in Immunology 35 (11), pp. 562 - 570 (2014)
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