Publications

Publications

  1. Vuolo, F., Kierzkowski, D., Runions, A., Hajheidari, M., Mentink, R. A., Das Gupta, M., Zhang, Z., Vlad, D., Wang, Y., Pecinka, A., Gan, X., Hay, A., Huijser, P., & Tsiantis, M. (2018). LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes and Development. doi:10.1101/gad.318212.118.
  2. Failmezger, H.*, Lempe, J.*, Khadem, N., Cartolano, M., Tsiantis M., Tresch, A. (2018) MowJoe: a method for automated-high throughput dissected leaf phenotyping. Plant Methods 14:27. doi: 10.1186/s13007-018-0290
  3. Rasmann, S., Sánchez Vilas, J., Glauser, G., Cartolano, M., Lempe, J., Tsiantis, M., Pannell, J.R., Heil, M. (2018) Pleiotropic effect of the Flowering Locus C on plant resistance and defence against insect herbivores. Journal of Ecology 106:1244–1255. https://doi.org/10.1111/1365-2745.12894
  4. Sapala, A., Runions, A., Routier-Kierzkowska, A.-L., Das Gupta, M., Hong, L., Hofhuis, H., Verger, S., Mosca, G., Li, C.-B., Hay, A., Hamant, O., Roeder, A., Tsiantis, M., Prusinkiewicz, R., & Smith, R. S. (2018). Why plants make puzzle cells, and how their shape emerges. eLife, 7: e32794. doi:10.7554/eLife.32794.
  5. McKim, S. M., Routier-Kierzkowska, A.-L., Monniaux, M., Kierzkowski, D., Pieper, B., Smith, R. S., Tsiantis, M., & Hay, A. (2017). Seasonal Regulation of Petal Number. Plant Physiology 175, 886-903. doi:10.1104/pp.17.00563.
  6. Rebeiz, M., & Tsiantis, M. (2017). Enhancer evolution and the origins of morphological novelty. Current Opinion in Genetics & Development 45, 115-123. doi:10.1016/j.gde.2017.04.006.
  7. Runions, A., & Tsiantis, M. (2017). The shape of things to come: From typology to predictive models for leaf diversity. American Journal of Botany 104, 1437-1441. doi:10.3732/ajb.1700251.
  8. Nikolov, L. A., & Tsiantis, M. Using mustard genomes to explore the genetic basis of evolutionary change. Current Opinion in Plant Biology 36, 119-128 doi:10.1016/j.pbi.2017.02.005 (2017).
  9. Runions, A., Tsiantis, M., & Prusinkiewicz, P. A common developmental program can produce diverse leaf shapes. New Phytologist 216, 401-418 doi:10.1111/nph.14449 (2017).
  10. Imprialou, M., Kahles, A., Steffen, J. G., Osborne, E. J., Gan, X., Lempe, J., Bhomra, A., Belfield, E., Visscher, A., Greenhalgh, R., Harberd, N. P., Goram, R., Hein, J., Robert-Seilaniantz, A., Jones, J., Stegle, O., Kover, P., Tsiantis, M., Nordborg, M., Rätsch, G., Clark, R. M., Mott, R. Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics 205(4), 1425-1441, doi: 10.1534/genetics.116.192823 (2017).
  11. Monniaux, M., McKim, S. M., Cartolano, M., Thévenon, E., Parcy, F., Tsiantis, M. and Hay, A. (2017), Conservation vs divergence in LEAFY and APETALA1 functions between Arabidopsis thaliana and Cardamine hirsuta. New Phytolgist 216, 549-561, doi:10.1111/nph.14419.
  12. Vuolo, F.*; Mentink, R. A.*, Mohsen, H.*, Baily, C. D., Filatov, D. A., Tsiantis, M.: Coupled enhancer and coding sequence evolution of a homeobox gene shaped leaf diversity. Genes & Development, doi: 10.1101/gad.290684.116 (2016).
  13. Gan, X.*, Hay, A.*, Kwantes, M.*, Haberer, G. Hallab, A., Dello Ioio, R., Hofhuis, H., Pieper, B., Cartolano, M., Neumann, U., Nikolov, L. A., Song, B., Hajheidari, M., Briskine, R., Kougioumoutzi, E., Vlad, D., Broholm, S., Hein, J., Meksem, K., Lightfoot, D., Shimizu, K. K., Shimizu-Inatsugi, R., Imprialou, M., Kudrna, D., Wing, R., Sato, S., Huijser, P., Filatov, D., Mayer, K. F. X., Mott, R., Tsiantis, M. The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants, DOI: 10.1038/nplants.2016.167 (2016).
  14. Hay A, Tsiantis M. Cardamine hirsuta: a comparative view. Curr Opin Genet Dev 39:1-7 (2016).
  15. Hofhuis, H*. Moulton, D.*, Lessinnes, T.*, Routier-Kierzkowska, A.-L.*, Bomphrey, R.J.*, Mosca, G., Reinhardt, H., Sarchet, P., Gan, X., Tsiantis, M., Ventikos, Y., Walker, S, Goriely, A., Smith, R. and A. Hay: Morphomechanical Innovation Drives Explosive Seed Dispersal. Cell 166, 1, 222-2333, DOI: 10.1016/j.cell.2016.05.002 (2016).
  16. Nikolov, L. A., Tsiantis, M.: Interspecies gene transfer as a method for understanding the genetic basis for evolutionary change: Progress, Pitfalls and Prospects. Frontiers in Plant Science 6, 01135, DOI:10.3389/fpls.2015.01135 (2015).   
  17. Rast-Somssich, M.; Broholm, S.; Jenkins, H.; Canales, C.; Vlad, D.; Kwantes, M.; Bilsborough, G.; Dello Ioio, R.; Ewing, R. M.; Laufs, P.; Huijser, P.; Ohno, C.; Heisler, M. G.; Hay, A.; Tsiantis, M.: Alternate wiring of a KNOXI genetic network underlies differences in leaf development of A. thaliana and C. hirsute. Genes and Development 29: 2391-2404 (2015).
  18. Cartolano M, Pieper B, Lempe J, Tattersall A, Huijser P, Tresch A, Darrah PR, Hay A, Tsiantis M. (2015). Heterochrony underpins natural variation in Cardamine hirsuta leaf form. PNAS 112(33): 10539-44
  19. Mentink, R. A., Tsiantis, M.: From limbs to leaves: common themes in evolutionary diversification of organ form. Frontiers in Genetics 6, 00284, DOI:10.3389/fgene.2015.00284 
  20. Barbier de Reuille P, Routier-Kierzkowska A, Kierzkowski D, Bassel GW, Schüpbach T, Tauriello G, Bajpai N, Strauss S, Weber A, Kiss A, Burian A, Hofhuis H, Sapala A, Lipowczan M, Heimlicher MB, Robinson S, Bayer EM, Basler K, Koumoutsakos P, Roeder A, Aegerter-Wilmsen T, Nakayama N, Tsiantis M, Hay A, Kwiatkowska D, Xenarios I, Kuhlemeier C, Smith RS (2015) MorphoGraphX: A platform for quantifying morphogenesis in 4D. eLife 4:e05864
  21. Nelson AD, Forsythe ES, Gan X, Tsiantis M, Beilstein MA. (2014) Extending the model of Arabidopsis telomere length and composition across Brassicaceae. Chromosome Res. 22, 153-66. doi: 10.1007/s10577-014-9423-y.
  22. Vlad D, Kierzkowski D, Rast MI, Vuolo F, Dello Ioio R, Galinha C, Gan X, Hajheidari M, Hay A, Smith RS, Huijser P, Bailey CD, Tsiantis M(2014) Leaf shape evolution through duplication, regulatory diversification, and loss of a homeobox gene. Science 343, 780-3. doi: 10.1126/science.1248384.
  23. Hay AS, Pieper B, Cooke E, Mandáková T, Cartolano M, Tattersall AD, Ioio RD, McGowan SJ, Barkoulas M, Galinha C, Rast MI, Hofhuis H, Then C, Plieske J, Ganal M, Mott R, Martinez-Garcia JF, Carine MA, Scotland RW, Gan X, Filatov DA, Lysak MA, Tsiantis M(2014) Cardamine hirsuta: a versatile genetic system for comparative studies. Plant J. 78,1-15. doi: 10.1111/tpj.12447.
  24. Kougioumoutzi, E., Cartolano, M., Canales, C., Dupré, M., Bramsiepe, J., Vlad, D., Rast, M., Dello Ioio, R., Tattersall, A., Schnittger, A., Hay, A and Tsiantis, M. (2013) SIMPLE LEAF3 encodes a ribosome-associated protein required for leaflet development in Cardamine hirsuta. The Plant Journal 73, 533-45.
  25. Dello Ioio, R., Galinha, C., Fletcher, A.G., Grigg, S.P., Molnar, A., Willemsen, V., Schered, B., Sabatini, S., Baulcombe, D., Maini, P.K. and Tsiantis, M. (2012) A PHABULOSA/Cytokinin Feedback Loop Controls Root Growth in Arabidopsis. Current Biology 22,1699-1704
  26. Tsiantis, M.  A transposon in tb1 drove maize domestication. (2011) Nature Genetics 43, News and Views, 1048-105
  27. Prasad, K., Grigg S., Barkoulas, M., Yadav, R.K., Sanchez-Perez, G.F., Pinon, V., Blilou, I., Hofhuis, H.  Dhonukshe, P., Galinha, C., Mähönen, A.P, Muller, W.H, Raman S., Verkleij, A.J, Snel, B., Reddy, G.V, Tsiantis, M., Scheres, B. (2011) Arabidopsis PLETHORA transcription factors control phyllotaxis. Current Biology 21, 1123-1128
  28. Bilsborough, G., Runions, A., Barkoulas, M., Jenkins, H., Hasson, A., Galinha, C., Laufs, P., Hay, A., Prusinkiewicz, P. and Tsiantis, M. (2011) Model for the regulation of Arabidopsis thaliana leaf margin development. PNAS 108, 3424-3429
  29. Piazza, P., Bailey, C.D., Cartolano, M., Krieger, J., Cao, J., Ossowski, S., Schneeberger, K., Hall, N., He, F., Meaux, J., MacLeod, N., Filatov,  D., Hay, A. and Tsiantis, M. (2010) Arabidopsis thaliana leaf form evolved via loss of KNOX expression in leaves in association with a selective sweep. Current Biology 20, 2223-2228.
  30. Hay, A. and Tsiantis, M. (2010) KNOX genes: versatile regulators of plant development and diversity. Development 137, 3153-3165
  31. Scarpella, E., Barkoulas, M. and Tsiantis, M. (2010) Control of Leaf and Vein Development by Auxin. Cold Spring Harbor Perspectives in Biology 2, a001511
  32. Canales, C, Barkoulas, M., Galinha, C., and Tsiantis, M. (2010) Weeds of change: Cardamine hirsuta as a new model system for studying dissected leaf development. Journal of Plant Research 123, 25-33  
  33. Galinha, C., Billsborough, G. and Tsiantis, M. (2009) Hormonal input in plant meristems: a balancing act. Semin. Cell Devel. Biol. 20, 1149-1156.
  34. Grigg, S., Galinha, C., Kornet, N., Canales, C., Scheres, B.  and Tsiantis, M. (2009) Repression of apical homeobox genes is required for Arabidopsis embryonic root development. Current Biology, 19, 1485-1490
  35. Hay, A. and Tsiantis, M. (2009) A KNOX family TALE Cur. Op. in Plant Biol. 12, 593-598
  36. Blein, T., Pulido, A., Vialette-Guiraud, A., Nikovics, K., Morin, H., Hay, A., Johansen, I.E., Tsiantis, M. and Laufs, P. (2008) A conserved molecular framework for compound leaf development. Science 322, 1835-1838
  37. Barkoulas, M. Hay, A. Kouyioumoutzi, E and Tsiantis, M. (2008).  A developmental framework for dissected leaf formation in the Arabidopsis relative Cardamine hirsuta. Nature Genetics 40, 1136 – 1141.
  38. Jasinski, S., Tattersall, A., Piazza, P., Hay, A. Martinez-Garcia, J., Schmitz, G., Theres, K., McCormick, S., Tsiantis, M. (2008) PROCERA encodes a DELLA protein that mediates control of dissected leaf form in tomato. The Plant Journal 56, 603-612.
  39. Barkoulas, M., Galinha C., Grigg, S. and Tsiantis, M. (2007) From genes to shape: regulatory interactions in leaf development. Cur. Op. in Plant Biol 10, 660-666
  40. Jasinski, S., Kaur, H., Tattersall, A. and Tsiantis, M. (2007) Negative regulation of KNOX expression in tomato leaves. Planta 226, 1255-1263.
  41. Hay, A., Barkoulas, M. and Tsiantis, M. (2006) ASYMMETRIC LEAVES1 and auxin activities converge to repress BREVIPEDICELLUS expression and promote leaf development in Arabidopsis. Development 133, 3955-3961.
  42. Hay, A. and Tsiantis, M. (2006) The genetic basis for differences in leaf form between Arabidopsis and its wild relative Cardamine hirsuta. Nature Genetics 38, 942-947.  
  43. Tsiantis, M. (2006) The versatility of plant development: Many strategies for exiting seed dormancy. Current Biology 16, R25-R27.
  44. Grigg, S., Canales, C., Hay, A. and Tsiantis, M. (2005) SERRATE coordinates shoot meristem function and leaf axial patterning in Arabidopsis. Nature 437, 1022-1026.
  45. Jasinski, S, Piazza, P., Craft J., Hay, A., Woolley, L., Rieu, I., Phillips, A., Hedden, P., and Tsiantis, M. (2005) KNOX action in Arabidopsis is mediated by coordinate regulation of cytokinin and gibberellin activities. Current Biology 15, 1560-5.

* contributed equally.

 

 
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