IMPRS Publications

Awad, M.; Gan, X.: GALA: a computational framework for de novo chromosome-by chromosome assembly with long reads. Nature Communications 14, 204 (2023)

Baumgarten, L.; Pieper, B.; Song, B.; Mane, S.; Lempe, J.; Lamb, J.; Cooke, E. L.; Srivastava, R.; Struett, S.; Zanko, D. et al.; Casimiro, P. G. P.; Hallab, A.; Cartolano, M.; Tattersall, A. D.; Huettel, B.; Filatov, D. A.; Pavlidis, P.; Neuffer, B.; Bazakos, C.; Schaefer, H.; Mott, R.; Gan, X.; Alonso-Blanco, C.; Laurent, S.; Tsiantis, M.: Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns. PLoS Biology 21 (7), e3002191 (2023)

Bhatia, N.; Wilson-Sanchez, D.; Strauss, S.; Vuolo, F.; Pieper, B.; Hu, Z.; Rambaud-Lavigne, L.; Tsiantis, M.: Interspersed expression of CUP-SHAPED COTYLEDON2 and REDUCED COMPLEXITY shapes Cardamine hirsuta complex leaf form. Current Biology (2023)

Cao, Y.; Kümmel, F.; Logemann, E.; Gebauer, J. M.; Lawson, A. W.; Yu, D.; Uthoff, M.; Keller, B.; Jirschitzka, J.; Baumann, U. et al.; Tsuda, K.; Chai, J.; Schulze-Lefert, P.: Structural polymorphisms within a common powdery mildew effector scaffold as a driver of coevolution with cereal immune receptors. Proceedings of the National Academy of Sciences of the United States of America 120 (32), e2307604120 (2023)

Cerise, M.; da Silveira Falavigna, V.; Rodriguez Maroto, G.; Signol, A.; Severing, E.; Gao, H.; van Driel, A.; Vincent, C.; Wilkens, S.; Iacobini, F. et al.; Formosa-Jordan, P.; Pajoro, A.; Coupland, G.: Two modes of gene regulation by TFL1 mediate its dual function in flowering time and shoot determinacy of Arabidopsis. Development 150 (23), dev202089 (2023)

de Jager, N.; Shukla, V.; Koprivova, A.; Lyčka, M.; Bilalli, L.; You, Y.; Zeier, J.; Kopriva, S.; Ristova, D.: Traits linked to natural variation of sulfur content in A. thaliana leaf. Journal of Experimental Botany, erad401 (2023)

Elfarargi, A. F.; Gilbault, E.; Doering, N.; Neto, C.; Fulgione, A.; Weber, A. P. M.; Loudet, O.; Hancock, A. M.: Genomic Basis of Adaptation to a Novel Precipitation Regime. Molecular Biology and Evolution 40 (3), msad031 (2023)

Getzke, F.; Hassani, M. A.; Crüsemann, M.; Malisic, M.; Zhang, P.; Ishigaki, Y.; Böhringer, N.; Jiménez Fernández, A.; Wang, L.; Ordon, J. et al.; Ma, K.-W.; Thiergart, T.; Harbort, C. J.; Wesseler, H.; Miyauchi, S.; Garrido-Oter, R.; Shirasu, K.; Schäberle, T.F.; Hacquard, S.; Schulze-Lefert, P.: Co-functioning of bacterial exometabolites drives root microbiota establishment. Proceedings of the National Academy of Sciences of the United States of America 120 (15), e2221508120 (2023)

Ji, C.; Song, F.; He, C.; An, J.; Huang, S.; Yu, H.; Lu, H.; Xiao, S.; Bucher, M.; Pan, Z.: Integrated miRNA-mRNA analysis reveals candidate miRNA family regulating arbuscular mycorrhizal symbiosis of Poncirus trifoliata. Plant, Cell and Environment 46 (6), pp. 1805 - 1821 (2023)

Johanndrees, O.; Baggs, E. L.; Uhlmann, C.; Locci, F.; Laessle, H.; Melkonian, K.; Käufer, K.; Dongus, J. A.; Nakagami, H.; Krasileva, K. V. et al.; Parker, J. E.; Lapin, D.: Variation in plant Toll/Interleukin-1 receptor domain protein dependence on ENHANCED DISEASE SUSCEPTIBILITY 1. Plant Physiology 191, kiac480, pp. 626 - 642 (2023)

Kolesnikova, U. K.; Scott, A. D.; Van de Velde, J. D.; Burns, R.; Tikhomirov, N. P.; Pfordt, U.; Clarke, A. C.; Yant, L.; Seregin, A. P.; Vekemans, X. et al.; Laurent, S.; Novikova, P. Y.: Transition to Self-compatibility Associated With Dominant S-allele in a Diploid Siberian Progenitor of Allotetraploid Arabidopsis kamchatica Revealed by Arabidopsis lyrata Genomes. Molecular Biology and Evolution 40 (7), msad122 (2023)

Kusch, S.; Qian, J.; Loos, A.; Kümmel, F.; Spanu, P. D.; Panstruga, R.: Long-term and rapid evolution in powdery mildew fungi. Molecular Ecology (2023)

Llamas, E.; Koyuncu, S.; Lee, H. J.; Wehrmann, M.; Gutierrez-Garcia, R.; Dunken, N.; Charura, N.; Torres-Montilla, S.; Schlimgen, E.; Mandel, A. M. et al.; Theile, E. B.; Grossbach, J.; Wagle, P.; Lackmann, J.-W.; Schermer, B.; Benzing, T.; Beyer, A.; Pulido, P.; Rodriguez-Concepcion, M.; Zuccaro, A.; Vilchez, D.: In planta expression of human polyQ-expanded huntingtin fragment reveals mechanisms to prevent disease-related protein aggregation. Nature aging 3, pp. 1345 - 1357 (2023)

Mahlandt, A.; Singh, D. K.; Mercier, R.: Engineering apomixis in crops. Theoretical and Applied Genetics 136 (6), 131 (2023)

Ordon, J.; Kiel, N.; Becker, D.; Kretschmer, C.; Schulze-Lefert, P.; Stuttmann, J.: Targeted gene deletion with SpCas9 and multiple guide RNAs in Arabidopsis thaliana: four are better than two. Plant Methods 19 (1), 30 (2023)

Rahimzadeh Karvansara, P.; Kelly, C.; Krone, R.; Zenzen, I.; Ristova, D.; Silz, E.; Jobe, T.O.; Kopriva, S.: Unique features of regulation of sulfate assimilation in monocots. Journal of Experimental Botany 74 (1308), 320, pp. 308 (2023)

Sarnowska, E.; Kubala, S.; Cwiek, P.; Sacharowski, S.; Oksinska, P.; Steciuk, J.; Zaborowska, M.; Szurmak, J. M.; Dubianski, R.; Maassen, A. et al.; Stachowiak, M.; Huettel, B.; Ciesla, M.; Nowicka, K.; Rolicka, A. T.; Alseekh, S.; Bucior, E.; Franzen, R.; Skoneczna, A.; Domagalska, M. A.; Amar, S.; Hajirezaei, M.-R.; Siedlecki, J. A.; Fernie, A. R.; Davis, S. J.; Sarnowski, T. J.: A non-canonical function of Arabidopsis ERECTA proteins and a role of the SWI3B subunit of the SWI/SNF chromatin remodeling complex in gibberellin signaling. The Plant Journal 115 (3), pp. 788 - 802 (2023)

Singh, D. K.; Gamboa, R. S.; Singh, A. K.; Walkemeier, B.; Van Leene, J.; De Jaeger, G.; Siddiqi, I.; Guerois, R.; Crismani, W.; Mercier, R.: The FANCC-FANCE-FANCF complex is evolutionarily conserved and regulates meiotic recombination. Nucleic Acids Research 51 (3), pp. 2516 - 2528 (2023)

Srivastava, R.; Bazakos, C.; Tsachaki, M.; Zanko, D.; Kalantidis, K.; Tsiantis, M.; Laurent, S.: Genealogical Analyses of 3 Cultivated and 1 Wild Specimen of Vitis vinifera from Greece. Genome Biology and Evolution 15 (12), evad226 (2023)

Strütt, S.; Sellinger, T.; Glémin, S.; Tellier, A.; Laurent, S.: Joint inference of evolutionary transitions to self-fertilization and demographic history using whole-genome sequences. eLife 12, e82384 (2023)