Publications of M. Tsiantis

Journal Article (50)

2024
Journal Article
Li, X.-M.; Jenke, H.; Strauss, S.; Bazakos, C.; Mosca, G.; Lymbouridou, R.; Kierzkowski, D.; Neumann, U.; Naik, P.; Huijser, P. et al.; Laurent, S.; Smith, R. S.; Runions, A.; Tsiantis, M.: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis. Current Biology 34, pp. 541 - 556.e515 (2024)
2023
Journal Article
Baumgarten, L.; Pieper, B.; Song, B.; Mane, S.; Lempe, J.; Lamb, J.; Cooke, E. L.; Srivastava, R.; Struett, S.; Zanko, D. et al.; Casimiro, P. G. P.; Hallab, A.; Cartolano, M.; Tattersall, A. D.; Huettel, B.; Filatov, D. A.; Pavlidis, P.; Neuffer, B.; Bazakos, C.; Schaefer, H.; Mott, R.; Gan, X.; Alonso-Blanco, C.; Laurent, S.; Tsiantis, M.: Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns. PLoS Biology 21 (7), e3002191 (2023)
Journal Article
Bhatia, N.; Wilson-Sanchez, D.; Strauss, S.; Vuolo, F.; Pieper, B.; Hu, Z.; Rambaud-Lavigne, L.; Tsiantis, M.: Interspersed expression of CUP-SHAPED COTYLEDON2 and REDUCED COMPLEXITY shapes Cardamine hirsuta complex leaf form. Current Biology (2023)
Journal Article
Srivastava, R.; Bazakos, C.; Tsachaki, M.; Zanko, D.; Kalantidis, K.; Tsiantis, M.; Laurent, S.: Genealogical Analyses of 3 Cultivated and 1 Wild Specimen of Vitis vinifera from Greece. Genome Biology and Evolution 15 (12), evad226 (2023)
2022
Journal Article
Liu, S.; Strauss, S.; Adibi, M.; Mosca, G.; Yoshida, S.; Dello Ioio, R.; Runions, A.; Andersen, T. G.; Grossmann, G.; Huijser, P. et al.; Smith, R. S.; Tsiantis, M.: Cytokinin promotes growth cessation in the Arabidopsis root. Current Biology 32 (9), pp. 1974 - 1985 (2022)
Journal Article
Strauß, S.; Runions, A.; Lane, B.; Eschweiler, D.; Bajpai, N.; Trozzi, N.; Routier-Kierzkowska, A.-L.; Yoshida, S.; Rodrigues da Silveira, S.; Vijayan, A. et al.; Tofanelli, R.; Majda, M.; Echevin, E.; Le Gloanec, C.; Bertrand-Rakusova, H.; Adibi, M.; Schneitz, K.; Bassel, G. W.; Kierzkowski, D.; Stegmaier, J.; Tsiantis, M.; Smith, R. S.: Using positional information to provide context for biological image analysis with MorphoGraphX 2.0. ELIFE 11, e72601 (2022)
Journal Article
Vijayan, A.; Strauß, S.; Tofanelli, R.; Mody, T. A.; Lee, K.; Tsiantis, M.; Smith, R. S.; Schneitz, K.: The annotation and analysis of complex 3D plant organs using 3DCoordX. Plant Physiology 189 (3), pp. 1278 - 1295 (2022)
Journal Article
Wang, Y.; Strauß, S.; Liu, S.; Pieper, B.; Lymbouridou, R.; Runions, A.; Tsiantis, M.: The cellular basis for synergy between RCO and KNOX1 homeobox genes in leaf shape diversity. Current Biology 32 (17), pp. 3773 - 3784.e5 (2022)
2021
Journal Article
Bhatia, N.; Runions, A.; Tsiantis, M.: Leaf Shape Diversity: From Genetic Modules to Computational Models. Annual Review of Plant Biology 72, pp. 325 - 356 (2021)
Journal Article
Paulisic, S.; Qin, W.; Veraszto, H. A.; Then, C.; Alary, B.; Nogue, F.; Tsiantis, M.; Hothorn, M.; Martinez-Garcia, J. F.: Adjustment of the PIF7-HFR1 transcriptional module activity controls plant shade adaptation. EMBO Journal 40, e104273 (2021)
Journal Article
Winkelmueller, T. M.; Entila, F.; Anver, S.; Piasecka, A.; Song, B.; Dahms, E.; Sakakibara, H.; Gan, X.; Kułak, K.; Sawikowska, A. et al.; Krajewski, P.; Garrido-Oter, R.; Tsiantis, M.; Fukushima, K.; Schulze-Lefert, P.; Laurent, S.; Bednarek, P.; Tsuda, K.: Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species. The Plant Cell, koab073 (2021)
2020
Journal Article
Akiyama, R.; Sun, J.; Hatakeyama, M.; Lischer, H. E. L.; Briskine, R. V.; Hay, A.; Gan, X.; Tsiantis, M.; Kudoh, H.; Kanaoka, M. et al.; Sese, J.; Shimizu, K. K.; Shimizu-Inatsugi, R.: Fine-scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species. New Phytologist 229, pp. 3587 - 3601 (2020)
Journal Article
Kamei, C. L. A.; Pieper, B.; Laurent, S.; Tsiantis, M.; Huijser, P.: CRISPR/Cas9-Mediated Mutagenesis of RCO in Cardamine hirsuta. PLANTS-BASEL 9 (2), 268 (2020)
Journal Article
Romani, F.; Banic, E.; Florent, S. N.; Kanazawa, T.; Goodger, J. Q. D.; Mentink, R. A.; Dierschke, T.; Zachgo, S.; Ueda, T.; Bowman, J. L. et al.; Tsiantis, M.; Moreno, J. E.: Oil Body Formation in Marchantia polymorpha Is Controlled by MpC1HDZ and Serves as a Defense against Arthropod Herbivores. Current Biology 30 (14), pp. 2815 - 2828.e (2020)
Journal Article
Strauss, S.; Lempe, J.; Prusinkiewicz, P.; Tsiantis, M.; Smith, R. S.: Phyllotaxis: is the golden angle optimal for light capture? New Phytologist 225 (1), pp. 499 - 510 (2020)
Journal Article
Wolny, A.; Cerrone, L.; Vijayan, A.; Tofanelli, R.; Barro, A. V.; Louveaux, M.; Wenzl, C.; Strauß, S.; Wilson Sánchez, D.; Lymbouridou, R. et al.; Steigleder, S. S.; Pape, C.; Bailoni, A.; Duran-Nebreda, S.; Bassel, G. W.; Lohmann, J. U.; Tsiantis, M.; Hamprecht, F. A.; Schneitz, K.; Maizel, A.; Kreshuk, A.: Accurate and versatile 3D segmentation of plant tissues at cellular resolution. eLife 9, e57613 (2020)
Journal Article
Zhang, Z.; Runions, A.; Mentink, R. A.; Kierzkowski, D.; Karady, M.; Hashemi, B.; Huijser, P.; Strauß, S.; Gan, X.; Ljung, K. et al.; Tsiantis, M.: A WOX/Auxin Biosynthesis Module Controls Growth to Shape Leaf Form. Current Biology 30, pp. 4857 - 4868.e6 (2020)
2019
Journal Article
Busch, A.; Deckena, M.; Almeida-Trapp, M.; Kopischke, S.; Kock, C.; Schuessler, E.; Tsiantis, M.; Mithoefer, A.; Zachgo, S.: MpTCP1 controls cell proliferation and redox processes in Marchantia polymorpha. New Phytologist 224 (4), pp. 1627 - 1641 (2019)
Journal Article
Hajheidari, M.; Wang, Y.; Bhatia, N.; Vuolo, F.; Franco-Zorrilla, J. M.; Karady, M.; Mentink, R. A.; Wu, A.; Rilwan Oluwatobi, B. R.; Müller, B. et al.; Dello Ioio, R.; Laurent, S.; Ljung, K.; Huijser, P.; Gan, X.; Tsiantis, M.: Autoregulation of RCO by low-affinity binding modulates cytokinin action and shapes leaf diversity. Current Biology (2019)
Journal Article
Kierzkowski, D.; Runions, A.; Vuolo, F.; Strauß, S.; Lymbouridou, R.; Routier-Kierzkowska, A.-L.; Wilson Sánchez, D.; Jenke, H.; Galinha, C.; Mosca, G. et al.; Zhang, Z.; Canales, C.; Dello Ioio, R.; Huijser, P.; Smith, R. S.; Tsiantis, M.: A Growth-Based Framework for Leaf Shape Development and Diversity. Cell (2019)
Journal Article
Molina-Contreras, M. J.; Paulisic, S.; Then, C.; Moreno-Romero, J.; Pastor-Andreu, P.; Morelli, L.; Roig-Villanova, I.; Jenkins, H.; Hallab, A.; Gan, X. et al.; Gomez-Cadenas, A.; Tsiantis, M.; Rodriguez-Concepcion, M.; Martinez-Garcia, J. F.: Photoreceptor Activity Contributes to Contrasting Responses to Shade in Cardamine and Arabidopsis Seedlings. The Plant Cell 31 (11), pp. 2649 - 2663 (2019)
Journal Article
Nikolov, L. A.; Shushkov, P.; Nevado, B.; Gan, X.; Al-Shehbaz, I. A.; Filatov, D.; Bailey, C. D.; Tsiantis, M.: Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity. New Phytologist 222, pp. 1638 - 1651 (2019)
2018
Journal Article
Das Gupta, M.; Tsiantis, M.: Gene networks and the evolution of plant morphology. Current Opinion in Plant Biology 45, pp. 82 - 87 (2018)
Journal Article
Di Ruocco, G.; Bertolotti, G.; Pacifici, E.; Polverari, L.; Tsiantis, M.; Sabatini, S.; Costantino, P.; Dello Ioio, R.: Differential spatial distribution of miR165/6 determines variability in plant root anatomy. Development 145 (1), UNSP dev153858 (2018)
Journal Article
Failmezger, H.; Lempe, J.; Khadem, N.; Cartolano, M.; Tsiantis, M.; Tresch, A.: MowJoe: a method for automated-high throughput dissected leaf phenotyping. Plant Methods 14, 27 (2018)
Journal Article
Rasmann, S.; Vilas, J. S.; Glauser, G.; Cartolano, M.; Lempe, J.; Tsiantis, M.; Pannell, J. R.: Pleiotropic effect of the Flowering Locus C on plant resistance and defence against insect herbivores. Journal of Ecology 106 (3), pp. 1244 - 1255 (2018)
Journal Article
Sapala, A.; Runions, A.; Routier-Kierzkowska, A.-L.; Das Gupta, M.; Hong, L.; Hofhuis, H.; Verger, S.; Mosca, G.; Li, C.-B.; Hay, A. et al.; Hamant, O.; Roeder, A.H.K.; Tsiantis, M.; Prusinkiewicz, R.; Smith, R. S.: Why plants make puzzle cells, and how their shape emerges. eLife 7, e32794 (2018)
Journal Article
Vuolo, F.; Kierzkowski, D.; Runions, A.; Hajheidari, M.; Mentink, R. A.; Das Gupta, M.; Zhang, Z.; Vlad, D.; Wang, Y.; Pecinka, A. et al.; Gan, X.; Hay, A.; Huijser, P.; Tsiantis, M.: LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes and Development 32, pp. 1361 - 1366 (2018)
2017
Journal Article
Imprialou, M.; Kahles, A.; Steffen, J. G.; Osborne, E. J.; Gan, X.; Lempe, J.; Bhomra, A.; Belfield, E.; Visscher, A.; Greenhalgh, R. et al.; Harberd, N. P.; Goram, R.; Hein, J.; Robert-Seilaniantz, A.; Jones, J.; Stegle, O.; Kover, P.; Tsiantis, M.; Nordborg, M.; Rätsch , G.; Clark, R. M.; Mott, R.: Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics 205 (4), pp. 1425 - 1441 (2017)
Journal Article
McKim, S. M.; Routier-Kierzkowska, A.-L.; Monniaux, M.; Kierzkowski, D.; Pieper, B.; Smith, R. S.; Tsiantis, M.; Hay, A.: Seasonal Regulation of Petal Number. Plant Physiology 175 (2), pp. 886 - 903 (2017)
Journal Article
Monniaux, M.; McKim, S. M.; Cartolano, M.; Thévenon, E.; Parcy, F.; Tsiantis, M.; Hay, A.: Conservation vs divergence in LEAFY and APETALA1 functions between Arabidopsis thaliana and Cardamine hirsuta. New Phytologist 216, pp. 549 - 561 (2017)
Journal Article
Nikolov, L. A.; Tsiantis, M.: Using mustard genomes to explore the genetic basis of evolutionary change. Current Opinion in Plant Biology 36, pp. 119 - 128 (2017)
Journal Article
Rebeiz, M.; Tsiantis, M.: Enhancer evolution and the origins of morphological novelty. Current Opinion in Genetics & Development 45, pp. 115 - 123 (2017)
Journal Article
Runions, A.; Tsiantis, M.: The shape of things to come: From typology to predictive models for leaf diversity. American Journal of Botany 104 (10), pp. 1437 - 1441 (2017)
Journal Article
Runions, A.; Tsiantis, M.; Prusinkiewicz, P.: A common developmental program can produce diverse leaf shapes. New Phytologist 216 (2), pp. 401 - 418 (2017)
2016
Journal Article
Gan, X.; Hay, A.; Kwantes, M.; Haberer, G.; Hallab, A.; Dello Ioio, R.; Hofhuis, H.; Pieper, B.; Cartolano, M.; Neumann, U. et al.; Nikolov, L. A.; Song, B.; Hajheidari, M.; Briskine, R.; Kougioumoutzi, E.; Vlad, D.; Broholm, S.; Hein, J.; Meksem, K.; Lightfoot, D.; Shimizu, K. K.; Shimizu-Inatsugi, R.; Imprialou, M.; Kudrna, D.; Wing, R.; Sato, S.; Huijser, P.; Filatov, D.; Mayer, K. F. X.; Mott, R.; Tsiantis, M.: The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants 2 (10), 16167 (2016)
Journal Article
Hay, A.; Tsiantis, M.: Cardamine hirsuta: a comparative view. Current Opinion in Genetics & Development 39, pp. 1 - 7 (2016)
Journal Article
Hofhuis, H.; Moulton, D.; Lessinnes, T.; Routier-Kierzkowska, A.-L.; Bomphrey, R.J.; Mosca, G.; Reinhardt, H.; Sarchet, P.; Gan, X.; Tsiantis, M. et al.; Ventikos, Y.; Walker, S.; Goriely, A.; Smith, R. S.; Hay, A.: Morphomechanical Innovation Drives Explosive Seed Dispersal. Cell 166 (1), pp. 222 - 33 (2016)
Journal Article
Matsuhashi, S.; Kudoh, H.; Maki, M.; Cartolano, M.; Tsiantis, M.; Itagaki, T.; Sakai, S.: Invasion history of Cardamine hirsuta in Japan inferred from genetic analyses of herbarium specimens and current populations. BIOLOGICAL INVASIONS 18 (7), pp. 1939 - 1951 (2016)
Journal Article
Vuolo, F.; Mentink, R. A.; Hajheidari, M.; Bailey, C. D.; Filatov, D. A.; Tsiantis, M.: Coupled enhancer and coding sequence evolution of a homeobox gene shaped leaf diversity. Genes and Development 30, pp. 2370 - 2375 (2016)
2015
Journal Article
Barbier de Reuille, P.; Routier-Kierzkowska, A.-L.; Kierzkowski, D.; Bassel, G. W.; Schuepbach, T.; Tauriello, G.; Bajpai, N.; Strauss, S.; Weber, A.; Kiss, A. et al.; Burian, A.; Hofhuis, H.; Sapala, A.; Lipowczan, M.; Heimlicher, M. B.; Robinson, S.; Bayer, E. M.; Basler, K.; Koumoutsakos, P.; Roeder, A. H. K.; Aegerter-Wilmsen, T.; Nakayama, N.; Tsiantis, M.; Hay, A.; Kwiatkowska, D.; Xenarios, I.; Kuhlemeier, C.; Smith, R. S.: MorphoGraphX: A platform for quantifying morphogenesis in 4D. ELIFE 4, e05864 (2015)
Journal Article
Cartolano, M.; Pieper, B.; Lempe, J.; Tattersall, A.; Huijser, P.; Tresch, A.; Darrah, P. R.; Hay, A.; Tsiantis, M.: Heterochrony underpins natural variation in Cardamine hirsuta leaf form. Proceedings of the National Academy of Sciences of the United States of America 112 (33), pp. 10539 - 10544 (2015)
Journal Article
Mentink, R.; Tsiantis, M.: From limbs to leaves: common themes in evolutionary diversification of organ form. Frontiers in genetics 6, p. 284 - 284 (2015)
Journal Article
Nikolov, L. A.; Tsiantis, M.: Interspecies Gene Transfer as a Method for Understanding the Genetic Basis for Evolutionary Change: Progress, Pitfalls, and Prospects. Frontiers in Plant Science 6, 1135 (2015)
Journal Article
Rast-Somssich, M.; Broholm, S.; Jenkins, H.; Canales, C.; Vlad, D.; Kwantes, M.; Bilsborough, G.; Dello Ioio, R.; Ewing, R. M.; Laufs, P. et al.; Huijser, P.; Ohno, C.; Heisler, M. G.; Hay, A.; Tsiantis, M.: Alternate wiring of a KNOXI genetic network underlies differences in leaf development of A. thaliana and C. hirsuta. Genes and Development 29 (23), pp. 2391 - 2404 (2015)
2014
Journal Article
Hay, A.; Pieper, B.; Cooke, E.; Mandakova, T.; Cartolano, M.; Tattersall, A. D.; Ioio, R. D.; McGowan, S. J.; Barkoulas, M.; Galinha, C. et al.; Rast, M. I.; Hofhuis, H.; Then, C.; Plieske, J.; Ganal, M.; Mott, R.; Martinez-Garcia, J. F.; Carine, M. A.; Scotland, R. W.; Gan, X.; Filatov, D. A.; Lysak, M. A.; Tsiantis, M.: Cardamine hirsuta: a versatile genetic system for comparative studies. The Plant Journal 78 (1), pp. 1 - 15 (2014)
Journal Article
Nelson, A. D. L.; Forsythe, E. S.; Gan, X.; Tsiantis, M.; Beilstein, M. A.: Extending the model of Arabidopsis telomere length and composition across Brassicaceae. SI 22 (2), pp. 153 - 166 (2014)
Journal Article
Vlad, D.; Kierzkowski, D.; Rast, M. I.; Vuolo, F.; Dello Ioio, R.; Galinha, C.; Gan, X.; Hajheidari, M.; Hay, A.; Smith, R. S. et al.; Huijser, P.; Bailey, C. D.; Tsiantis, M.: Leaf Shape Evolution Through Duplication, Regulatory Diversification, and Loss of a Homeobox Gene. Science 343 (6172), pp. 780 - 783 (2014)
2013
Journal Article
Kougioumoutzi, E.; Cartolano, M.; Canales, C.; Dupre, M.; Bramsiepe, J.; Vlad, D.; Rast, M.; Dello Ioio, R.; Tattersall, A.; Schnittger, A. et al.; Hay, A.; Tsiantis, M.: SIMPLE LEAF3 encodes a ribosome-associated protein required for leaflet development in Cardamine hirsuta. The Plant Journal 73 (4), pp. 533 - 545 (2013)
2012
Journal Article
Dello Ioio, R.; Galinha, C.; Fletcher, A. G.; Grigg, S. P.; Molnar, A.; Willemsen, V.; Scheres, B.; Sabatini, S.; Baulcombe, D.; Maini, P. K. et al.; Tsiantis, M.: A PHABULOSA/Cytokinin Feedback Loop Controls Root Growth in Arabidopsis. Current Biology 22 (18), pp. 1699 - 1704 (2012)
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