Scientific Publications since 2002

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Burns, R.; Glushkevich, A.; Kulkarni, A.; Kolesnikova, U. K.; Kolar, F.; Scott, A. D.; Novikova, P. Y.: Diploid origins and early genome stabilization in the allotetraploid Arabidopsis suecica. New Phytologist 249 (1), pp. 524 - 538 (2026)

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Elkatmis, B.; Tuerksoy, G. M.; Rodríguez, E.; Rahmoune, B.; Koprivova, A.; Kopriva, S.: Sulfur as a Central Integrator of Plant-Microbe Interactions: From Nutrient Cycling to Immune Signalling and Microbiome Assembly. Journal of Experimental Botany, erag186 (2026)

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Eng, R. C.; Emonet, A.; Neumann, U.; Pauly, M.; Hay, A.: CESA7 and microtubules pattern complex secondary cell walls in explosive fruit of Cardamine hirsuta. The Plant Cell 38 (3), koag062 (2026)

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Neto, C.; Theeuwen, T.P. J. M.; Flood, P. J.; Unger, P.; Goektay, M.; Aarts, M. G. M.; Hancock, A. M.: Uncovering adaptation with a new Arabidopsis thaliana multiparent intercross population. Genetics 232 (2), PMID 374636, p. iyaf227 (2026)

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Oliveri, H.; Cozzolino, E.; Goriely, A.: A multiscale theory for network advection- reaction-diffusion. Journal of Mathematical Biology 92, 65 (2026)

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Parker, J. E.; Wang, J.: A fellowship of the rings in plant defence. Nature (2026)

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Prior, M. J.; Weidauer, D.; Locci, F.; Liao, J.-Y.; Kuwata, K.; Deng, C.; Ye, H. B.; Cai, Q.; Bezrutczyk, M.; Zhao, C. et al.; Jonikas, M. C.; Pilot, G.; Jin, H.; Parker, J. E.; Frommer, W. B.; Kim, J.-Y.: The Arabidopsis neutral amino acid transporter UmamiT20 confers Botrytis cinerea susceptibility. Journal of Experimental Botany 77 (4), PMID 9882906, pp. 1003 - 1012 (2026)

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Rahnamae, N.; Metzger, L.; Hoerdemann, L.; Korfmann, K.; Khan, A. S.; Oezoglan, Y.; Dent, C. I.; Amar, S.; Wijfjes, R. Y.; Ali, T. et al.; Schmitz, G.; Stich, B.; Tellier, A.; de Meaux, J.: Contemporary hybridization among Arabis floodplain species creates opportunities for adaptation. New Phytologist 249, pp. 1542 - 1557 (2026)

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Sashidhar, N.; Coupland, G.: In perennial Arabis alpina, CONSTANS and FLOWERING LOCUS T have common and distinct effects on flowering and inflorescence architecture. New Phytologist (2026)

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Skodra, C.; Michailidis, M.; Raptis, P.; Giannoutsou, E.; Adamakis, I.-D. S.; Kontomina, E.-A.; Samiotaki, M.; Bazakos, C.; Tanou, G.; Molassiotis, A.: Silicon-induced tissue-specific reprogramming of the ripening transition in kiwifruit. Postharvest Biology and Technology 232, 113983 (2026)

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Wang, Y.; Zahn, I. E.; Heidemann, B.; Fuentes, R. R.; Underwood, C. J.: Synthetic Apomeiosis in Tomato via the Mutagenesis of SlSPO11-1, SlREC8, and SlTAM to Engineer Mitosis Instead of Meiosis. Methods in Molecular Biology 2987, pp. 255 - 273 (2026)

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Yarkhunova-Kreye, Y.; Hancock, A. M.: Finding the genetic basis of adaptation: reducing complexity to improve trait mapping. Current Opinion in Genetics & Development 97, 102432 (2026)

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Zappone, D.; Schroder, P. M.; Petrik, I.; Dong, X.; Schaufele, R.; Schneeberger, K.; Novak, O.; Schwechheimer, C.: B-GATA factors are required for nitrogen-responsive growth in Physcomitrium patens and Arabidopsis thaliana. New Phytologist, PMID 9882884 (2026)

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Zedek, F.; Bures, P.; Elliott, T. L.; Escudero, M.; Lucek, K.; Marques, A.: Chromosome size as a robust predictor of recombination rate: insights from holocentric and monocentric systems. Genetics, iyaf247 (2026)

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Zhou, H.; Doan, D. T. H.; Hartwig, T.; Turck, F.: Cis-regulatory architecture downstream of FLOWERING LOCUS T underlies quantitative control of flowering in Arabidopsis thaliana. Genome Biology 27, 124 (2026)

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Ahern, A.; Thompson, T. B.; Oliveri, H.; Lorthois, S.; Goriely, A.: Modelling cerebrovascular pathology and the spread of amyloid beta in Alzheimer's disease. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences 481 (2311), 20240548 (2025)

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Albernaz, V. B.; Mata-Sucre, Y.; Sader, M. A.; Rodriguez, P. E.; Targueta, C.P.; Antunes, A. M.; Pinto, R. B.; Marques, A.; Rocha, D. M. S. D. A.; Souza, G. et al.; Soares, T. N.: Integrative systematics of the Brazilian tree "sucupira": morphological, cytogenetic and genomic boundaries of Pterodon emarginatus Vogel and P. pubescens (Benth.) Benth. (Leguminosae, Papilionoideae). Systematics and Biodiversity 23 (1), 2474979 (2025)

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Almeida, C.; Marques, A.: Giant mitogenomes in Rhynchospora are a result of nuclear gene and retrotransposon insertions in intergenic spaces. Annals of Botany, mcaf098 (2025)

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Amrhein, A.; Zhang, M.; Hacquard, S.; Heintz-Buschart, A.; Wippel, K.: Pseudomonas intra-genus competition determines the protective function of synthetic bacterial communities in Arabidopsis thaliana. PLOS Biology 23 (7), e3002882 (2025)

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Barbosa, L. H. S.; Amorim, L.; Ribeiro, R. V.; Neumann, U.; Timmers, T.; Andersen, T. G.; Sposito, M. B.; Appezzato-da-Gloria, B.: Late Leaf Rust Monocyclic Components and Primary Metabolism of Raspberry Plants Facing Water Deficit. Plant Pathology (2025)

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Barbosa, L. H. S.; Neumann, U.; Timmers, T.; Andersen, T. G.; Appezzato-da-Glória, B.: Histopathology of Aculeastrum americanum on Rubus idaeus and insights into the chloroplast-pathogen interaction. Frontiers in Plant Science 16, 1630100 (2025)

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Bartels, D.; Giarola, V.; Chandler, J. W.: Unravelling the molecular network of desiccation tolerance in resurrection plants started with the model plant Craterostigma plantagineum. Planta 262 (2), 37 (2025)

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Benitez-Benitez, C.; Mohan, A. V.; Sanchez-Villegas, R.; Gomez-Ramos, I.; Valdes-Florido, A.; Lucek, K.; Slovak, M.; Kolar, F.; Leitch, I. J.; Luceno, M. et al.; Larridon, I.; Carta, A.; Cusco-Borras, J.; Maguilla, E.; Montero-Ramirez, A.; Meirmans, P. G.; Scott, A. D.; Martin-Bravo, S.; Escudero, M.: Bridging micro and macroevolution: insights from chromosomal dynamics in plants. Frontiers in Plant Science 16, 1606450 (2025)

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Biancucci, M.; Chirivi, D.; Baldini, A.; Badenhorst, E.; Dobetti, F.; Khahani, B.; Formentin, E.; Eguen, T.; Turck, F.; Moore, J. P. et al.; Tavakol, E.; Wenkel, S.; Lo Schiavo, F.; Ezquer, I.; Brambilla, V.; Horner, D.; Chiara, M.; Perrella, G.; Betti, C.; Fornara, F.: Mutations in HEADING DATE 1 affect transcription and cell wall composition in rice. Plant Physiology 197 (4), kiaf120 (2025)

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Brazel, A. J.; Manoj, N.S.; Turck, F.; Ó’Maoiléidigh, D.S.: Measuring CO2 assimilation of Arabidopsis thaliana whole plants and seedlings. Plant Science 350 (January), 112295 (2025)

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Calabria, J.; Wang, L.; Rast-Somssich, M. I.; Chen, H.-W.; Watt, M.; Persson, S.; Andersen, T. G.; Idnurm, A.; Somssich, M.: Resolving spatially distinct phytohormone response zones in Arabidopsis thaliana roots colonized by Fusarium oxysporum. Journal of Experimental Botany, erae516 (2025)

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Carrillo-Carrasco, V. P.; Hernandez-Garcia, J.; Girou, C.; Grubor, I.; Keller, J.; Lim, E.; Schmidt, V.; Sorensen, I.; Vosolsobe, S.; Buschmann, H. et al.; Delaux, P.-M.; Domozych, D.; Holzinger, A.; Nakagami, H.; Nishiyama, T.; Petrasek, J.; Renault, H.; Rensing, S. A.; Rose, J. K. C.; Sekimoto, H.; Delwiche, C. D.; Weijers, D.; de Vries, J.: A roadmap to developing unified streptophyte algal model systems. Current Biology 35 (14), pp. R725 - R738 (2025)

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Celestini, S.; Duchoslav, M.; Nezamivand-Chegini, M.; Gerchen, J.; Sramkova, G.; Wijfjes, R.; Krejcova, A.; Kuzmanovic, N.; Spaniel, S.; Schneeberger, K. et al.; Yant, L.; Kolar, F.: Genomic basis of adaptation to serpentine soil in two Alyssum species shows convergence with Arabidopsis across 20 million years of divergence. Annals of Botany, mcaf141 (2025)

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Chesneau, G.; Herpell, J.; Garrido Oter, R.; Hacquard, S.: From synthetic communities to synthetic ecosystems: exploring causalities in plant-microbe-environment interactions. New Phytologist 245 (2), pp. 496 - 502 (2025)

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Chesneau, G.; Herpell, J.; Wolf, S. M., S. M.; Perin, S.; Hacquard, S.: MetaFlowTrain: a highly parallelized 1 and modular fluidic system for studying exometabolite-mediated inter-organismal interactions. Nature Communications 16, 3310 (2025)

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Chrysostomakis, I.; Mozer, A.; Di-Nizo, C. B.; Fischer, D.; Sargheini, N.; von der Mark, L.; Huettel, B.; Astrin, J. J.; Topfer, T.; Bohne, A.: A high-quality reference genome for the Ural Owl (Strix uralensis) enables investigations of cell cultures as a genomic resource for endangered species. GigaScience 14, giaf106 (2025)

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Clark, F. K.; Weissbart, G.; Wang, X.; Harline, K.; Li, C.; Formosa-Jordan, P.; Roeder, A. K. H.: A common pathway controls cell size in the sepal and leaf epidermis leading to a non-random pattern of giant cells. PLOS Biology 23, e3003469 (2025)

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Copeland, C.; Schulze-Lefert, P.; Ma, K.-W.: Potential and challenges for application of microbiomes in agriculture. The Plant Cell 37 (8), koaf185 (2025)

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De Muyt, A.; Lee, S.; Khanal, S.; Dal Toe, L.; Adam, C.; Mercier, R.; Borde, V.; Hunter, N.; Robert, T.: HEIP1 orchestrates pro-crossover protein activity during mammalian meiosis. Proceedings of the National Academy of Sciences of the United States of America 122 (43), e2515747122 (2025)

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Durand, S.; Lian, Q.; Solier, V.; Fernandes, J. B.; Mercier, R.: MutLγ enforces meiotic crossovers in Arabidopsis thaliana. Nucleic Acids Research 53 (5), gkaf157 (2025)

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Engelhorn, J.; Snodgrass, S.; Kok, A.; Seetharam, A.S.; Schneider, M.; Kiwit Singh A., T.; Banf, M.; Khaipho-Burch, M.; Runcie, D.E.; Camargo, V.S. et al.; Torres-Rodriguez, J.V.; Sun, G.; Stam, M.; Fiorani, F.; Schnable, J.C.; Bass, H.W.; Hufford, M.B.; Stich, B.; Frommer, W. B.; Ross-Ibarra, J.; Hartwig, T.: Genetic variation at transcription factor binding sites largely explains phenotypic heritability in maize. Nature Genetics (2025)

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Fan, R.; Feng, L.; Liu, Y.; Tang, Q.; Zhao, Y.; Li, Y.; Gong, S.; Lin, R.; Huang, S.; Qi, T. et al.; Foerderer, A.; Yang, L.; Wang, Y.; Chai, J.; Schulze-Lefert, P.; He, H.; Shen, Q.-H.: An NLR receptor confers broad-spectrum resistance to diversified powdery mildew sublineages in wheat and barley. Plant Biotechnology Journal (2025)

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Gao, H.; Ding, N.; Wu, Y.; Yu, D.; Zhou, S.-Z.; Stolze, S. C.; Vincent, C.; Rodriguez Maroto, G.; de los Reyes, P.; Harzen, A. et al.; Cerise, M.; da Silveira Falavigna, V.; Li, E.; Timmers, T.; Neumann, U.; Nakagami, H.; Hu, J.-Y.; Chai, J.; Coupland, G.: Florigen activation complex forms via multifaceted assembly in Arabidopsis. Nature (2025)

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Garrido Oter, R.: A nitrogen-fixing bacterium forms symbioses on land and at sea. Nature Microbiology 10 (10), pp. 2363 - 2364 (2025)

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Gonzalo, A.; Fernandes, J. B.: Deciphering how dog roses with an odd chromosome copy number sexually reproduce. Nature 643 (8070), pp. 42 - 43 (2025)

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Guan, R.; Garrido Oter, R.: Integrated diversity and network analyses reveal drivers of microbiome dynamics. mSystems 10 (10), e0056425 (2025)

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Hancock, A. M.; Portalier, S.; Fulgione, A.; Stetter, M. G.; de Meaux, J.: The Molecular Basis of Adaptation to Climatic Factors and Range Change in Plants. Annual Review of Ecology, Evolution, and Systematics 56 (1), pp. 597 - 621 (2025)

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Heidemann, B.; Primetis, E.; Zahn, I.E.; Underwood, C. J.: To infinity and beyond: recent progress, bottlenecks, and potential of clonal seeds by apomixis. The Plant Journal 121 (4), e70054 (2025)

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Herklotz, V.; Zhang, M.; Nascimento, T. H. D.; Kalfusová, R.; Lunerová, J.; Fuchs, J.; Harpke, D.; Huettel, B.; Pfordt, U.; Wissemann, V. et al.; Kovařík, A.; Marques, A.; Ritz, C.M.: Bimodal centromeres in pentaploid dogroses shed light on their unique meiosis. Nature 643, pp. 148 - 157 (2025)

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Hong, K.; Nakano, M.; Tang, Y.; Jeanguenin, L.; Kang, W.; Wang, Y.; Zuo, L.; Li, P.; He, J.; Jiang, W. et al.; Huang, R.; Matsui, H.; Wang, Y.; Nakagami, H.; Li, B.; Li, X.; Xie, K.; Fukushima, K.; Guo, L.; Han, X.; Katagiri, F.; Hattori, M.; Tsuda, K.: Emergence of isochorismate- based salicylic acid biosynthesis within Brassicales. Proceedings of the National Academy of Sciences of the United States of America 122 (29), e2506170122 (2025)

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Huang, S.; Wang, J.; Song, R.; Jia, A.; Xiao, Y.; Sun, Y.; Wang, L.; Mahr, D.; Wu, Z.; Han, Z. et al.; Li, X.; Parker, J. E.; Chai, J.: Balanced plant helper NLR activation by a modified host protein complex. Nature 639, pp. 447 - 455 (2025)

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Johnston-Monje, D.; Martinez, J. I.: Seed Surface Sterilization Can Alter Root Microbiomes, Increase Endophyte Diversity and Enhance Plant Growth. Applied Sciences 15 (17), 9545 (2025)

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Joshi, M.; Duchen, P.; Kapopoulou, A.; Laurent, S.: Natural Selection in Transcription Factor-DNA Interaction Motifs: A Comparative and Population Genomics Perspective. Genome Biology and Evolution 17 (11), evaf212 (2025)

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Kadiyala, U.; Sprinzak, D.; Monk, N. A. M.; Taylor, S. E.; Verd, B.; Sonnen, K. F.; Moon, L.; Roeder, A. H. K.; Perez-Carrasco, R.; Formosa-Jordan, P.: From genes to patterns: five key dynamical systems concepts to decode developmental regulatory mechanisms. Development 152 (14), dev204617 (2025)

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Kang, W.; Nakano, M.; Fukumoto, K.; Hirata, R.; Zhai, P.; Du, Y.; Hong, K.; Ziegler, J.; Tsuda, Y.; Becker, D. et al.; Nambara, E.; Nakano, R. T.; Miyashima, S.; Mine, A.; Han, X.; Tsuda, K.: Evolutionary trade-off between stomatal defense and gas exchange in Brassicaceae. Current Biology 35 (23), pp. 5779 - 5792.e6 (2025)

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