How plants with hundreds of centromeres crossover. Nat. Plants (2024).

Dias, Y., Mata-Sucre, Y., Thangavel, G., Costa, L., Báez, M., Houben, A., Marques, A. and Pedrosa-Harand, A. (2024), How diverse a monocentric chromosome can be? Repeatome and centromeric organization of Juncus effusus (Juncaceae). Plant J.

Mata-Sucre Y, Parteka LM, Ritz CM, Gatica-Arias A, Félix LP, Thomas WW, Souza G, Vanzela ALL, Pedrosa-Harand A, Marques A. Oligo-barcode illuminates holocentric karyotype evolution in Rhynchospora (Cyperaceae). Front Plant Sci. 2024 Feb 7;15:1330927. doi: 10.3389/fpls.2024.1330927

Castellani, M., Zhang, M., Thangavel, G., Mata-Sucre, Y., Lux, T., Campoy, J. A., Marek, M., Huettel, B., Sun, H., Mayer, K. F. X, Schneeberger, Marques, A. (2024). Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning. Nature Plants.

Saul, F., Scharmann, M., Wakatake, T. et al. (2023) Subgenome dominance shapes novel gene evolution in the decaploid pitcher plant Nepenthes gracilis. Nat. Plants .

Mata-Sucre Y., W. Matzenauer, N. M. Souza Castro, B. Huettel, A. Pedrosa-Harand, Marques, A., Souza, G. (2023). Repeat-based phylogenomics shed light on unclear relationships in the monocentric genus Juncus L. (Juncaceae). Molecular Phylogenetics and Evolution 107930.

Castro N., Y. Mata-Sucre, J. Carvalho-Sobrinho, Marques, A., R. T. De Queiroz, Souza, G. (2023) Genomic stability in Cenostigma Tul., (Caesalpinioideae, Fabaceae): causes and consequences. Botanical Journal of the Linnean Society boad043.

Escudero, M.,  Marques, A.,  Lucek, K., &  Hipp, A. L. (2023).  Genomic hotspots of chromosome rearrangements explain conserved synteny despite high rates of chromosome evolution in a holocentric lineage. Molecular Ecology,  00,  1– 12.

Kuo, Y.-T, Souza Câmara, A., Schubert, V., Neumann, P., Macas, J., Melzer, M., Chen, J., Fuchs, J., Abel, S., Klocke, E., Huettel, B., Himmelbach, A., Demidov, D., Dunemann, F., Mascher, M., Ishii, T., Marques, A., Houben, A. (2023) Holocentromeres can consist of merely a few megabase-sized satellite arrays. Nature Communications 14, 3502

Castellani, M., Zhang, M., Thangavel, G., Sucre, Y. M., Lux, T., Campoy, J. A., Marek, M., Huettel, B., Sun, H., Mayer, K. F. X., Schneeberger, K., Marques, A. (2023) Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning. bioRxiv 2023.04.28.538594;  

Costa, L.,  Marques, A., Buddenhagen, C. E., Pedrosa-Harand, A., Souza, G. Investigating the diversification of holocentromeric satDNA Tyba in Rhynchospora (Cyperaceae), Annals of Botany, 2023; mcad036,

Thangavel, G., Hofstatter, P.G., Mercier, R., Marques A. Tracing the evolution of the plant meiotic molecular machinery. Plant Reproduction (2023).

Hofstatter, P. G., Thangavel, G., Lux, T., Neumann, P., Vondrak, T., Novak, P., Zhang, M., Costa, L., Castellani, M., Scott, A., Toegelová, H., Fuchs, J., Mata-Sucre, Y., Dias, Y., Vanzela, A. L. L., Huettel, B., Almeida, C. C. S., Šimková, H., Souza, G., Pedrosa-Harand, A., Macas, J., Mayer, K. F. X., Houben, A., & Marques, A. (2022). Repeat-based holocentromeres influence genome architecture and karyotype evolution. Cell. doi:10.1016/j.cell.2022.06.045.

Marques, A., Hufnagel, B., Soriano, A., Péret, B. The Highly Repeat-Diverse (Peri) Centromeres of White Lupin (Lupinus albus L.). Frontiers in Plant Science 13 (2022). 

Maria Alice Silva Oliveira, Tomáz Nunes, Maria Aparecida dos Santos, Danyelle Ferreira, Iara Costa, Brena Van-Lume, Sarah Seco Marques da Silva, Ronaldo Simão de Oliveira, Marcelo Simon, Gaus Silvestre de Andrade Lima, Danilo Soares Gissi, Cicero Carlos de Souza Almeida, Gustavo Souza and André Marques. High-throughput genomic data reveal complex phylogenetic relationships in Stylosanthes Sw. (Leguminosae). Frontiers in Genetics 12, 1846 (2021).     

Lucas Costa, André Marques, Chris Buddenhagen, William Wayt Thomas, Bruno Huettel, Veit Schubert, Steven Dodsworth, Andreas Houben, Gustavo Souza, Andrea Pedrosa-Harand, Aiming off the target: recycling target capture sequencing reads for investigating repetitive DNA, Annals of Botany, 2021; mcab063,

Barbosa, P., Schemczssen-Graeff, Z., Marques, A., da Silva, M., Favero, G.M., Sobreiro, B.P., de Almeida, M.C., Moreira-Filho, O., Silva, D.M.Z.d.A., Porto-Foresti, F., Foresti, F., Artoni, R.F. Silencing of Transposable Elements Mediated by 5-mC and Compensation of the Heterochromatin Content by Presence of B Chromosomes in Astyanax scabripinnis. Cells 10, 1162 (2021).

Hofstatter, P. G., Thangavel, G., Castellani, M., Marques, A. Meiosis Progression and Recombination in Holocentric Plants: What Is Known? Frontiers in Plant Science 12, 617 (2021).

Hufnagel, B., Marques, A., Soriano, A. et al. High-quality genome sequence of white lupin provides insight into soil exploration and seed quality. Nat Commun 11, 492 (2020).

Burchardt, P., Buddenhagen, C. E., Gaeta, M. L., Souza, M. D., Marques, A.*, Vanzela, A. L. L.* Holocentric Karyotype Evolution in Rhynchospora Is Marked by Intense Numerical, Structural, and Genome Size Changes. Frontiers in Plant Science 11, 1390 (2020).     

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