MPIPZ Scientific Publications since 2002

Journal Article (2269)

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Basak, A. K.; Piasecka, A.; Hucklenbroich, J.; Tuerksoy, G. M.; Guan, R.; Zhang, P.; Getzke, F.; Garrido-Oter, R.; Hacquard, S.; Strzalka, K. et al.; Bednarek, P.; Yamada, K.; Nakano, R. T.: ER body-resident myrosinases and tryptophan specialized metabolism modulate root microbiota assembly. New Phytologist 241, pp. 329 - 342 (2024)
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Castellani, M.; Zhang, M.; Thangavel, G.; Mata Sucre, Y.; Lux, T.; Campoy, J. A.; Marek, M.; Huettel, B.; Sun, H.-Q.; Mayer, K. F. X. et al.; Schneeberger, K.; Marques, A.: Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning. Nature Plants (2024)
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Emonet, A.; Awad, M.; Tikhomirov, N.; Vasilarou, M.; Pérez Antón, M.; Gan, X.; Novikova, P. Y.; Hay, A.: Polyploid genome assembly of Cardamine chenopodiifolia. bioRxiv: the preprint server for biology (2024)
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Emonet, A.; Pérez Antón, M.; Neumann, U.; Dunemann, S.; Huettel, B.; Koller, R.; Hay, A.: Amphicarpic development in the emerging model organism Cardamine chenopodiifolia. bioRxiv: the preprint server for biology (2024)
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Entila, F.; Han, X.; Mine, A.; Schulze-Lefert, P.; Tsuda, K.: Commensal lifestyle regulated by a negative feedback loop between Arabidopsis ROS and the bacterial T2SS. Nature Communications 15 (1), 456 (2024)
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Grones, C.; Eekhout, T.; Shi, D.; Neumann, M.; Berg, L. S.; Ke, Y.; Shahan, R.; Cox, K. L.; Gomez-Cano, F.; Nelissen, H. et al.; Lohmann, J. U.; Giacomello, S.; Martin, O. C.; Cole, B.; Wang, J.-W.; Kaufmann, K.; Raissig, M. T.; Palfalvi, G.; Greb, T.; Libault, M.; De Rybel, B.: Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics. The Plant Cell, koae003, pp. 1 - 17 (2024)
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Huang, L.; Oekmen, B.; Stolze, S. C.; Kastl, M.; Khan, M.; Hilbig, D.; Nakagami, H.; Djamei, A.; Doehlemann, G.: The fungal pathogen Ustilago maydis targets the maize corepressor RELK2 to modulate host transcription for tumorigenesis. New Phytologist 241 (4), pp. 1747 - 1762 (2024)
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Li, X.-M.; Jenke, H.; Strauss, S.; Bazakos, C.; Mosca, G.; Lymbouridou, R.; Kierzkowski, D.; Neumann, U.; Naik, P.; Huijser, P. et al.; Laurent, S.; Smith, R. S.; Runions, A.; Tsiantis, M.: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis. Current Biology 34, pp. 541 - 556.e515 (2024)
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Locci, F.; Parker, J. E.: Plant NLR immunity activation and execution: a biochemical perspective. Open Biology 14 (1), 230387 (2024)
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Ma, X.; Vanneste, S.; Chang, J.; Ambrosino, L.; Barry, K.; Bayer, T.; Bobrov, A. A.; Boston, L. B.; Campbell, J. E.; Chen, H. et al.; Chiusano, M. L.; Dattolo, E.; Grimwood, J.; He, G.; Jenkins, J.; Khachaturyan, M.; Marin-Guirao, L.; Mesterhazy, A.; Muhd, D.-D.; Pazzaglia, J.; Plott, C.; Rajasekar, S.; Rombauts, S.; Ruocco, M.; Scott, A. D.; Tan, M. P.; Van den Velde, J. D.; Vanholme, B.; Webber, J.; Wong, L. L.; Yan, M.; Sung, Y. Y.; Novikova, P. Y.; Schmutz, J.; Reusch, T. B. H.; Procaccini, G.; Olsen, J. L.; Van de Peer, Y.: Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature Plants 10, pp. 240 - 255 (2024)
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Manosalva Perez, N.; Ferrari, C.; Engelhorn, J.; Depuydt, T.; Nelissen, H.; Hartwig, T.; Vandepoele, K.: MINI-AC: inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles. The Plant Journal 117 (1), pp. 280 - 301 (2024)
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Mosca, G.; Eng, R. C.; Adibi, M.; Yoshida, S.; Lane, B.; Bergheim, L.; Weber, G.; Smith, R. S.; Hay, A.: Growth and tension in explosive fruit. Current Biology (2024)
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Sajeev, N.; Koornneef, M.; Bentsink, L.: A commitment for life: Decades of unraveling the molecular mechanisms behind seed dormancy and germination. The Plant Cell, koad328, pp. 1 - 19 (2024)
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Schmitz, G.; Linstaedter, A.; Frank, A.S. K.; Dittberner, H.; Thome, J.; Schrader, A.; Linne von Berg, K.-H.; Fulgione, A.; Coupland, G.; de Meaux, J.: Environmental filtering of life-history trait diversity in urban populations of Arabidopsis thaliana. Journal of Ecology 112 (1), pp. 14 - 27 (2024)
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Valasiadis, D.; Kollaros, M. G.; Michailidis, M.; Polychroniadou, C.; Tanou, G.; Bazakos, C.; Molassiotis, A.: Wide-characterization of high and low dry matter kiwifruit through spatiotemporal multi-omic approach. Postharvest Biology and Technology 209, 112727 (2024)
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Xuan, Y. H.; Wang, Y.; Gao, L.; Gan, X.: Editorial: Novel insights into the regulatory role of sugar and amino acids signaling in plant-microbe interactions. Frontiers in Plant Science 14, 1261186 (2024)
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Ai, H.; Bellstaedt, J.; Bartusch, K. S.; Eschen-Lippold, L.; Babben, S.; Balcke, G. U.; Tissier, A.; Hause, B.; Andersen, T. G.; Delker, C. et al.; Quint, M.: Auxin-dependent regulation of cell division rates governs root thermomorphogenesis. The EMBO Journal 42 (11), e111926 (2023)
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Andersen, T. G.; Vermeer, J. E. M.: Bacterial gas-lighting of lateral root formation. PNAS 120 (17), e2303919120 (2023)
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Arlt, C.; Wachtmeister, T.; Koehrer, K.; Stich, B.: Affordable, accurate and unbiased RNA sequencing by manual library miniaturization: A case study in barley. Plant Biotechnology Journal 21 (11), pp. 2241 - 2253 (2023)
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Awad, M.; Gan, X.: GALA: a computational framework for de novo chromosome-by chromosome assembly with long reads. Nature Communications 14, 204 (2023)
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Baumgarten, L.; Pieper, B.; Song, B.; Mane, S.; Lempe, J.; Lamb, J.; Cooke, E. L.; Srivastava, R.; Struett, S.; Zanko, D. et al.; Casimiro, P. G. P.; Hallab, A.; Cartolano, M.; Tattersall, A. D.; Huettel, B.; Filatov, D. A.; Pavlidis, P.; Neuffer, B.; Bazakos, C.; Schaefer, H.; Mott, R.; Gan, X.; Alonso-Blanco, C.; Laurent, S.; Tsiantis, M.: Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns. PLoS Biology 21 (7), e3002191 (2023)
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Bhatia, N.; Wilson-Sanchez, D.; Strauss, S.; Vuolo, F.; Pieper, B.; Hu, Z.; Rambaud-Lavigne, L.; Tsiantis, M.: Interspersed expression of CUP-SHAPED COTYLEDON2 and REDUCED COMPLEXITY shapes Cardamine hirsuta complex leaf form. Current Biology (2023)
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Bock, D. G.; Liu, J.; Novikova, P. Y.; Rieseberg, L. H.: Long-read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity. Molecular Ecology 32, pp. 1229 - 1235 (2023)
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Brazel, A. J.; Fattorini, R.; McCarthy, J.; Franzen, R.; Rümpler, F.; Coupland, G.; O'Maoiléidigh, D. S.: AGAMOUS mediates timing of guard cell formation during gynoecium development. bioRxiv: the preprint server for biology (2023.01), 23.525231 (2023)
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Campos Martin, R.; Schmickler, S.; Goel, M.; Schneeberger, K.; Tresch, A.: Reliable genotyping of recombinant genomes using a robust hidden Markov model. Plant Physiology 192 (2), pp. 821 - 836 (2023)
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Cao, Y.; Kümmel, F.; Logemann, E.; Gebauer, J. M.; Lawson, A. W.; Yu, D.; Uthoff, M.; Keller, B.; Jirschitzka, J.; Baumann, U. et al.; Tsuda, K.; Chai, J.; Schulze-Lefert, P.: Structural polymorphisms within a common powdery mildew effector scaffold as a driver of co-evolution with cereal immune receptors. Proceedings of the National Academy of Sciences of the United States of America 120 (32), e2307604120 (2023)
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Castellani, M.; Zhang, M., M.; Thangavel, G.; Mata Sucre, Y.; Lux, T.; Campoy, J. A.; Marek, M.; Huettel, B.; Sun, H.; Mayer, K. F. X. et al.; Schneeberger, K.; Marques, A.: Meiotic recombination dynamics in plants with repeat-based holocentromeres1 shed light on the primary drivers of crossover patterning. bioRxiv, 2023.04.28.538594 (2023)
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Castro, N.; Mata-Sucre, Y.; Carvalho-Sobrinho, J.; Marques, A.; de Queiroz, R. T.; Souza, G.: Genomic stability in Cenostigma Tul., (Caesalpinioideae, Fabaceae): causes and consequences. Botanical Journal of the Linnean Society, boad043 (2023)
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Cerise, M.; da Silveira Falavigna, V.; Rodriguez Maroto, G.; Signol, A.; Severing, E.; Gao, H.; van Driel, A.; Vincent, C.; Wilkens, S.; Iacobini, F. et al.; Formosa-Jordan, P.; Pajoro, A.; Coupland, G.: Two modes of gene regulation by TFL1 mediate its dual function in flowering time and shoot determinacy of Arabidopsis. Development 150 (23), dev202089 (2023)
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Chai, J.; Song, W.; Parker, J. E.: New Biochemical Principles for NLR Immunity in Plants. Molecular Plant-Microbe Interactions 36 (8), pp. 468 - 475 (2023)
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Costa, L.; Marques, A.; Buddenhagen, C. E.; Pedrosa-Harand, A.; Souza, G.: Investigating the diversification of holocentromeric satellite DNA Tyba in Rhynchospora (Cyperaceae). Annals of Botany 131 (5), pp. 813 - 825 (2023)
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Crean, E. E.; Bilstein-Schloemer, M.; Maekawa, T.; Schulze-Lefert, P.; Saur, I. M. L.: A dominant-negative avirulence effector 1 of the barley powdery mildew fungus provides mechanistic insight to barley MLA immune receptor activation. Journal of Experimental Botany 74 (18), pp. 5854 - 5869 (2023)
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Cullen, E.; Wang, Q.; Glover, B. J.: How do you build a nectar spur? A transcriptomic comparison of nectar spur development in Linaria vulgaris and gibba development in Antirrhinum majus. Frontiers in Plant Science 14, 1190373 (2023)
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de Jager, N.; Shukla, V.; Koprivova, A.; Lyčka, M.; Bilalli, L.; You, Y.; Zeier, J.; Kopriva, S.; Ristova, D.: Traits linked to natural variation of sulfur content in A. thaliana leaf. Journal of Experimental Botany, erad401 (2023)
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Elfarargi, A. F.; Gilbault, E.; Doering, N.; Neto, C.; Fulgione, A.; Weber, A. P. M.; Loudet, O.; Hancock, A. M.: Genomic Basis of Adaptation to a Novel Precipitation Regime. Molecular Biology and Evolution 40 (3), msad031 (2023)
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Escobar-Nino, A.; Harzen, A.; Stolze, S. C.; Nakagami, H.; Fernandez-Acero, F. J.: The Adaptation of Botrytis cinerea Extracellular Vesicles Proteome to Surrounding Conditions: Revealing New Tools for Its Infection Process. Journal of Fungi 9 (9), 872 (2023)
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Escudero, M.; Marques, A.; Lucek, K.; Hipp, A. L. L.: Genomic hotspots of chromosome rearrangements explain conserved synteny despite high rates of chromosome evolution in a holocentric lineage. Molecular Ecology (2023)
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Feehan, J. M.; Wang, J.; Sun, X.; Choi, J.; Ahn, H. K.; Ngou, B. P.; Parker, J. E.; Jones, J. D.: Oligomerization of a plant helper NLR requires cell-surface and intracellular immune receptor activation. Proceedings of the National Academy of Sciences of the United States of America 120 (11), e2210406120 (2023)
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Foerderer, A.; Chai, J.: Die another day: phytosulfokine at the molecular trade-off between growth and defense in plants. The EMBO Journal 42 (6), e113540 (2023)
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Formosa-Jordan, P.; Holloway, D. M.; Diambra, L.: Editorial: Pattern formation in biology. Frontiers in Physics 11, 1161890 (2023)
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Frommer, B.; Muellner, S.; Holtgraewe, D.; Viehoever, P.; Huettel, B.; Toepfer, R.; Weisshaar, B.; Zyprian, E.: Phased grapevine genome sequence of an Rpv12 carrier for biotechnological exploration of resistance to Plasmopara viticola. Frontiers in Plant Science 14, 1180982 (2023)
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Gebhardt, C.: A physical map of traits of agronomic importance based on potato and tomato genome sequences. Frontiers in Genetics 14, 1197206 (2023)
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Getzke, F.; Hassani, M. A.; Crüsemann, M.; Malisic, M.; Zhang, P.; Ishigaki, Y.; Böhringer, N.; Jiménez Fernández, A.; Wang, L.; Ordon, J. et al.; Ma, K.-W.; Thiergart, T.; Harbort, C. J.; Wesseler, H.; Miyauchi, S.; Garrido-Oter, R.; Shirasu, K.; Schäberle, T.F.; Hacquard, S.; Schulze-Lefert, P.: Co-functioning of bacterial exometabolites drives root microbiota establishment. Proceedings of the National Academy of Sciences of the United States of America 120 (15), e2221508120 (2023)
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Giaume, F.; Bono, G. A.; Martignago, D.; Miao, Y.; Vicentini, G.; Toriba, T.; Wang, R.; Kong, D.; Cerise, M.; Chirivi, D. et al.; Biancucci, M.; Khahani, B.; Morandini, P.; Tameling, W.; Martinotti, M.; Goretti, D.; Coupland, G.; Kater, M.; Brambilla, V.; Miki, D.; Kyozuka, J.; Fornara, F.: Two florigens and a florigen-like protein form a triple regulatory module at the shoot apical meristem to promote reproductive transitions in rice. Nature Plants 9 (4), pp. 525 - 534 (2023)
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Griebel, T.; Lapin, D.; Locci, F.; Kracher, B.; Bautor, J.; Concia, L.; Benhamed, M.; Parker, J. E.: Arabidopsis Topless-related 1 mitigates physiological damage and growth penalties of induced immunity. New Phytologist 239 (4), pp. 1404 - 1419 (2023)
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Guerreiro, R.; Bonthala, V. S.; Schlueter, U.; Hoang, N. V.; Triesch, S.; Schranz, M. E.; Weber, A. P. M.; Stich, B.: A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. Plant, Cell and Environment (2023)
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Hartwig, T.; Banf, M.; Prietsch, G. P.; Zhu, J.-Y.; Mora-Ramirez, I.; Schippers, J. H. M.; Snodgrass, S. J.; Seetharam, A. S.; Huettel, B.; Kolkman, J. M. et al.; Yang, J.; Engelhorn, J.; Wang, Z.-Y.: Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize. Genome Biology and Evolution 24 (1), 108 (2023)
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Huang, S.; Jia, A.; Ma, S.; Sun, Y.; Chang, X.; Han, Z.; Chai, J.: NLR signaling in plants: from resistosomes to second messengers. Trends in biochemical sciences 48 (9), pp. 776 - 787 (2023)
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Ji, C.; Song, F.; He, C.; An, J.; Huang, S.; Yu, H.; Lu, H.; Xiao, S.; Bucher, M.; Pan, Z.: Integrated miRNA-mRNA analysis reveals candidate miRNA family regulating arbuscular mycorrhizal symbiosis of Poncirus trifoliata. Plant, Cell and Environment 46 (6), pp. 1805 - 1821 (2023)
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Johanndrees, O.; Baggs, E. L.; Uhlmann, C.; Locci, F.; Laessle, H.; Melkonian, K.; Käufer, K.; Dongus, J. A.; Nakagami, H.; Krasileva, K. V. et al.; Parker, J. E.; Lapin, D.: Variation in plant Toll/Interleukin-1 receptor domain protein dependence on ENHANCED DISEASE SUSCEPTIBILITY 1. Plant Physiology 191, kiac480, pp. 626 - 642 (2023)
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