Scientific Publications since 2002

Scientific Publications since 2002

Journal Article (1697)

  1. Blum, C. F.; Heramvand, N.; Khonsari, A. S.; Kollmann, M.: Experimental noise cutoff boosts inferability of transcriptional networks in large-scale gene-deletion studies. Nature Communications (2018)
  2. Di Ruocco, G.; Bertolotti, G.; Pacifici, E.; Polverari, L.; Tsiantis, M.; Sabatini, S.; Costantino, P.; Dello Ioio, R.: Differential spatial distribution of miR165/6 determines variability in plant root anatomy. Development (2018)
  3. Diaz, M.; Pecinka, A.: Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex. GENES (2018)
  4. Dijkhuizen, L. W.; Brouwer, P.; Bolhuis, H.; Reichart, G.-J.; Koppers, N.; Huettel, B.; Bolger, A.M.; Li, F.-W.; Cheng, S.; Liu, X. et al.; Wong, G. K.-S.; Pryer, K.; Weber, A.; Braeutigam, A.; Schluepmann, H.: Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N-2 but may denitrify. NEW PHYTOLOGIST 217 (1), pp. 453 - 466 (2018)
  5. Failmezger, H.; Lempe, J.; Khadem, N.; Cartolano, M.; Tsiantis, M.; Tresch, A.: MowJoe: a method for automated-high throughput dissected leaf phenotyping. Plant Methods (2018)
  6. Fulgione, A.; Koornneef, M.; Roux, F.; Hermisson, J.; Hancock, A. M.: Madeiran Arabidopsis thaliana Reveals Ancient Long-Range Colonization and Clarifies Demography in Eurasia. Molecular Biology and Evolution 35 (3), pp. 564 - 574 (2018)
  7. Gupta, R.; Min, C. W.; Kramer, K.; Agrawal, G. K.; Rakwal, R.; Park, K.-H.; Wang, Y.; Finkemeier, I.; Kim, S. T.: A Multi-Omics Analysis of Glycine max Leaves Reveals Alteration in Flavonoid and Isoflavonoid Metabolism Upon Ethylene and Abscisic Acid Treatment. PROTEOMICS (2018)
  8. Hassani, M. A.; Duran, P.; Hacquard, S.: Microbial interactions within the plant holobiont. MICROBIOME (2018)
  9. Ibanez, C.; Delker, C.; Martinez, C.; Buerstenbinder, K.; Janitza, P.; Lippmann, R.; Ludwig, W.; Sun, H.-Q.; James, G. V.; Klecker, M. et al.; Grossjohann, A.; Schneeberger, K.; Prat, S.; Quint, M.: Brassinosteroids Dominate Hormonal Regulation of Plant Thermomorphogenesis via BZR1. Current Biology 28 (2), pp. 303 - + (2018)
  10. Jacob, F.; Kracher, B.; Mine, A.; Seyfferth, C.; Blanvillain-Baufumé, S.; Parker, J. E.; Tsuda, K.; Schulze-Lefert, P.; Maekawa, T.: A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytologist 217 (4), pp. 1667 - 1680 (2018)
  11. Laenen, B.; Tedder, A.; Nowak, M.D.; Toraeng, P.; Wunder, J.; Woetzel, S.; Steige, K.A.; Kourmpetis, Y.; Odong, T.; Drouzas, A. et al.; Bink, M.; Agren, J.; Coupland, G.; Slotte, T.: Demography and mating system shape the genomewide impact of purifying selection in Arabis alpina. Proceedings of the National Academy of Sciences of the United States of America 115 (4), pp. 816 - 821 (2018)
  12. Lazaro, A.; Obeng-Hinneh, E.; Albani, M.: Extended Vernalization Regulates Inflorescence Fate in Arabis alpina by Stably Silencing PERPETUAL FLOWERING1. Plant Physiology 176 (4), pp. 2819 - 2833 (2018)
  13. Markus, C.; Pecinka, A.; Karan, R.; Barney, J. N.; Merotto Jr., A.: Epigenetic regulation - contribution to herbicide resistance in weeds? Pest Management Science 74 (2), pp. 275 - 281 (2018)
  14. Nobori, T.; Velásquez, A. C.; Wu, J.; Kvitko, B. H.; Kremer, J. M.; Wang, Y.; He, S. Y.; Tsuda, K.: Transcriptome landscape of a bacterial pathogen under plant immunity. Proceedings of the National Academy of Sciences of the United States of America (2018)
  15. O'Maoiléidigh, D. S.: A Conserved Mechanism to Terminate Floral Meristems. The Plant Cell 30 (2), p. 260 - 260 (2018)
  16. Oide, M.; Okajima, K.; Nakagami, H.; Kato, T.; Sekiguchi, Y.; Oroguchi, T.; Hikima, T.; Yamamoto, M.; Nakasako, M.: Blue light-excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from Arabidopsis. Journal of Biological Chemistry 293 (3), pp. 963 - 972 (2018)
  17. Pankin, A.; Altmueller, J.; Becker, C.; von Korff, M.: Targeted resequencing reveals genomic signatures of barley domestication. Special Issue: Featured papers on ‘Plant proteases’ 218 (3), pp. 1247 - 1259 (2018)
  18. Pislewska-Bednarek, M.; Nakano, R. T.; Hiruma, K.; Pastorczyk, M.; Sanchez-Vallet, A.; Singkaravanit-Ogawa, S.; Ciesiolka, D.; Takano, Y.; Molina, A.; Schulze-Lefert, P. et al.; Bednarek, P.: Glutathione Transferase U13 Functions in Pathogen-Triggered Glucosinolate Metabolism. Plant Physiology 176 (1), pp. 538 - 551 (2018)
  19. Rasmann, S.; Vilas, J. S.; Glauser, G.; Cartolano, M.; Lempe, J.; Tsiantis, M.; Pannell, J. R.: Pleiotropic effect of the Flowering Locus C on plant resistance and defence against insect herbivores. Journal of Ecology 106 (3), pp. 1244 - 1255 (2018)
  20. Robbins, C.; Thiergart, T.; Hacquard, S.; Garrido Oter, R.; Gans, W.; Peiter, E.; Schulze-Lefert, P.; Spaepen, S.: Root-associated bacterial and fungal community profiles of Arabidopsis thaliana are robust across contrasting soil P levels. Phytobiomes (2018)
  21. Sapala, A.; Runions, A.; Routier-Kierzkowska, A.-L.; Das Gupta, M.; Hong, L.; Hofhuis, H.; Verger, S.; Mosca, G.; Li, C.-B.; Hay, A. et al.; Hamant, O.; Roeder, A.H.K.; Tsiantis, M.; Prusinkiewicz, R.; Smith, R. S.: Why plants make puzzle cells, and how their shape emerges. eLife (2018)
  22. Sopeña-Torres, S.; Jorda, L.; Sanchez-Rodriguez, C.; Miedes, E.; Escudero, V.; Swamy, S.; Lopez, G.; Pislewska-Bednarek, M.; Lassowskat, I.; Lee, J. et al.; Gu, Y.; Haigis, S.; Alexander, D.; Pattathil, S.; Muñoz-Barrios, A.; Bednarek, P.; Somerville, S.; Schulze-Lefert, P.; Hahn, M.; Scheel, D.; Molina, A.: YODA MAP3K kinase regulates plant immune responses conferring broad-spectrum disease resistance. New Phytologist 218, pp. 661 - 680 (2018)
  23. Sun, H.-Q.; Ding, J.; Piednoel, M.; Schneeberger, K.: findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies. Bioinformatics 34 (4), pp. 550 - 557 (2018)
  24. Tsuda, K.: Division of Tasks: Defense by the Spatial Separation of Antagonistic Hormone Activities. Plant and Cell Physiology 59 (1), pp. 3 - 4 (2018)
  25. Wenzel, A.; Altmueller, J.; Ekici, A. B.; Popp, B.; Stueber, K.; Thiele, H.; Pannes, A.; Staubach, S.; Salido, E.; Nuernberg, P. et al.; Reinhardt, R.; Reis, A.; Rump, P.; Hanisch, F.-G.; Wolf, M. T. F.; Wiesener, M.; Huettel, B.; Beck, B. B.: Single molecule real time sequencing in ADTKD-MUC1 allows complete assembly of the VNTR and exact positioning of causative mutations. Scientific Reports (2018)
  26. Acevedo-Garcia, J.; Gruner, K.; Reinstaedler, A.; Kemen, A.; Kemen, E.; Cao, L.; Takken, F. L. W.; Reitz, M. U.; Schafer, P.; O'Connell, R. J. et al.; Kusch, S.; Kuhn, H.; Panstruga, R.: The powdery mildew-resistant Arabidopsis mlo2 mlo6 mlo12 triple mutant displays altered infection phenotypes with diverse types of phytopathogens. SCIENTIFIC REPORTS (2017)
  27. Adeyemo, S.; Chavarriaga, P.; Tohme, J.; Fregene, M.; Davis, S. J.; Setter, T. L.: Overexpression of Arabidopsis FLOWERING LOCUS T (FT) gene improves floral development in cassava (Manihot esculenta, Crantz). PLoS One (2017)
  28. Almario, J.; Jeena, G.; Wunder, J.; Langen, G.; Zuccaro, A.; Coupland, G.; Bucher, M.: Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition. Proceedings of the National Academy of Sciences of the United States of America 114 (44), pp. E9403 - E9412 (2017)
  29. Alvarez, M. F.; Angarita, M.; Delgado, M. C.; Garcia, C.; Jimenez-Gomez, J. M.; Gebhardt, C.; Mosquera, T.: Identification of Novel Associations of Candidate Genes with Resistance to Late Blight in Solanum tuberosum Group Phureja. Frontiers in Plant Science (2017)
  30. Ariga, H.; Katori, T.; Tsuchimatsu, T.; Hirase, T.; Tajima, Y.; Parker, J. E.; Alcázar, R.; Koornneef, M.; Hoekenga, O.; Lipka, A. E. et al.; Gore, M. A.; Sakakibara, H.; Kojima, M.; Kobayashi, Y.; Iuchi, S.; Kobayashi, M.; Shinozaki, K.; Sakata, Y.; Hayashi, T.; Saijo, Y.; Taji, T.: NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis. Nature Plants (2017)
  31. Balcke, G. U.; Bennewitz, S.; Bergau, N.; Athmer, B.; Henning, A.; Majovsky, P.; Jimenez-Gomez, J. M.; Hoehenwarter, W.; Tissier, A.: Multi-Omics of Tomato Glandular Trichomes Reveals Distinct Features of Central Carbon Metabolism Supporting High Productivity of Specialized Metabolites. Plant Cell 29 (5), pp. 960 - 983 (2017)
  32. Berens, M.; Berry, H. M.; Mine, A.; Argueso, C. T.; Tsuda, K.: Evolution of Hormone Signaling Networks in Plant Defense. ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 55, pp. 401 - 425 (2017)
  33. Birkenbihl, R.; Liu, S.; Somssich, I. E.: Transcriptional events defining plant immune responses. Current Opinion in Plant Biology 38 (SI: 38 Biotic Interactions 2017), pp. 1 - 9 (2017)
  34. Birkenbihl, R.; Kracher, B.; Roccaro, M.; Somssich, I. E.: Induced genome-wide binding of three WRKY transcription factors during early MAMP-triggered immunity. The Plant Cell 29, 10.1105/tpc.16.00681, pp. 20 - 38 (2017)
  35. Bowman, J. L.; Kohchi, T.; Yamato, K. T.; Jenkins, J.; Shu, S.; Ishizaki, K.; Yamaoka, S.; Nishihama, R.; Nakamura, Y.; Berger, F. et al.; Adam, C.; Aki, S. S.; Althoff, F.; Araki, T.; Arteaga-Vazquez, M. A.; Balasubrmanian, S.; Barry, K.; Bauer, D.; Boehm, C. R.; Briginshaw, L.; Caballero-Perez, J.; Catarino, B.; Chen, F.; Chiyoda, S.; Chovatia, M.; Davies, K. M.; Delmans, M.; Demura, T.; Dierschke, T.; Dolan, L.; Dorantes-Acosta, A. E.; Eklund, D. M.; Florent, S. N.; Flores-Sandoval, E.; Fujiyama, A.; Fukuzawa, H.; Galik, B.; Grimanelli, D.; Grimwood, J.; Grossniklaus, U.; Hamada, T.; Haseloff, J.; Hetherington, A. J.; Higo, A.; Hirakawa, Y.; Hundley, H. N.; Ikeda, Y.; Inoue, K.; Inoue, S.-I.; Ishida, S.; Jia, Q.; Kakita, M.; Kanazawa, T.; Kawai, Y.; Kawashima, T.; Kennedy, M.; Kinose, K.; Kinoshita, T.; Kohara, Y.; Koide, E.; Komatsu, K.; Kopischke, S.; Kubo, M.; Kyozuka, J.; Lagercrantz, U.; Lin, S.-S.; Lindquist, E.; Lipzen, A. M.; Lu, C.-W.; De Luna, E.; Martienssen, R.A.; Minamino, N.; Mizutani, M.; Mochizuki, N.; Monte, I.; Mosher, R.; Nagasaki, H.; Nakagami, H.; Naramoto, S.; Nishitani, K.; Ohtani, M.; Okamoto, T.; Okumura, M.; Phillips, J.; Pollak, B.; Reinders, A.; Rovekamp, M.; Sano, R.; Sawa, S.; Schmid, M. W.; Shirakawa, M.; Solano, R.; Spunde, A.; Suetsugu, N.; Sugano, S.; Sugiyama, A.; Sun, R.; Suzuki, Y.; Takenaka, M.; Takezawa, D.; Tomogane, H.; Tsuzuki, M.; Ueda, T.; Umeda, M.; Ward, J. M.; Watanabe, Y.; Yazaki, K...; Yokoyama, R.; Yoshitake, Y.; Yotsui, I.; Zachgo, S.; Schmutz, J.: Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. Cell 171 (2), pp. 287 - 304.e15 (2017)
  36. Chandrasekar, B.; Tram Hong, N.; Van der Hoorn, R. A. L.: Inhibitor Discovery by Convolution ABPP. ACTIVITY-BASED PROTEOMICS: METHODS AND PROTOCOLS, pp. 47 - 56 (2017)
  37. Chao, Y.; Li, L.; Girodat, D.; Foerstner, K. U.; Said, N.; Corcoran, C.; Smiga, M.; Papenfort, K.; Reinhardt, R.; Wieden, H.-J. et al.; Luisi, B. F.; Vogel, J.: In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways. Molecular Cell 65 (1), pp. 39 - 51 (2017)
  38. Costa, M.-C. D.; Artur, M. A. S.; Maia, J.; Jonkheer, E.; Derks, M. F. L.; Nijveen, H.; Williams, B.; Mundree, S. G.; Jimenez-Gomez, J. M.; Hesselink, T. et al.; Schijlen, E. G. W. M.; Ligterink, W.; Oliver, M. J.; Farrant, J. M.; Hilhorst, H. W. M.: A footprint of desiccation tolerance in the genome of Xerophyiita viscosa. Nature Plants (2017)
  39. Cui, H.; Gobbato, E.; Kracher, B.; Qiu, J.; Bautor, J.; Parker, J. E.: A core function of EDS1 with PAD4 is to protect the salicylic acid defense sector in Arabidopsis immunity. New Phytologist 213, 10.1111/nph.14302, pp. 1802 - 1817 (2017)
  40. Diaz, M.; Pecinka, A.: Seeds as Emerging Hotspot for Maintenance of Genome Stability. CYTOLOGIA 82 (5), pp. 467 - 470 (2017)
  41. Dombrowski, N.; Schlaeppi, K.; Agler, M.T.; Hacquard, S.; Kemen, E.; Garrido Oter, R.; Wunder, J.; Coupland, G.; Schulze-Lefert, P.: Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time. The ISME Journal 11, 10.1038/ismej.2016.109, pp. 43 - 55 (2017)
  42. Donnart, T.; Piednoel, M.; Higuet, D.; Bonnivard, E.: Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi. BMC Genomics (2017)
  43. Duarte-Delgado, D.; Juyo, D.; Gebhardt, C.; Sarmiento, F.; Mosquera-Vasquez, T.: Novel SNP markers in InvGE and SssI genes are associated with natural variation of sugar contents and frying color in Solanum tuberosum Group Phureja. BMC Medical Genetics (2017)
  44. Durvasula, A.; Fulgione, A.; Gutaker, R. M.; Alacakaptan, S. I.; Flood, P. J.; Neto, C.; Tsuchimatsu, T.; Burbano, H. A.; Xavier Pico, F.; Alonso-Blanco, C. et al.; Hancock, A. M.: African genomes illuminate the early history and transition to selfing in Arabidopsis thaliana. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 114 (20), pp. 5213 - 5218 (2017)
  45. Ejaz, M.; von Korff, M.: The genetic control of reproductive development under high ambient temperature. Plant Physiology 173 (1), pp. 294 - 306 (2017)
  46. Flood, P.; Hancock, A.: The genomic basis of adaptation in plants. Current Opinion in Plant Biology 36, pp. 88 - 94 (2017)
  47. Frantzeskakis, L.; Courville, K. J.; Pluecker, L.; Kellner, R.; Kruse, J.; Brachmann, A.; Feldbrügge, M.; Göhre, V.: The plant-dependent life cycle of Thecaphora thlaspeos: a smut fungus adapted to Brassicaceae. Molecular Plant-Microbe Interactions 30 (4), pp. 271 - 282 (2017)
  48. Fukunaga, S.; Sogame, M.; Hata, M.; Singkaravanit-Ogawa, S.; Piślewska-Bednarek, M.; Onozawa-Komori, M.; Nishiuchi, T.; Hiruma, K.; Saitoh, H.; Terauchi, R. et al.; Kitakura, S.; Inoue, Y.; Bednarek, P.; Schulze-Lefert, P.; Takano, Y.: Dysfunction of Arabidopsis MACPF domain protein activates programmed cell death via tryptophan metabolism in MAMP-triggered immunity. The Plant Journal 89, pp. 381 - 393 (2017)
  49. Furlan, G.; Nakagami, H.; Eschen-Lippold, L.; Jiang, X.; Majovsky, P.; Kowarschik, K.; Hoehenwarter, W.; Lee, J.; Trujillo, M.: Changes in PUB22 Ubiquitination Modes Triggered by MITOGEN-ACTIVATED PROTEIN KINASE3 Dampen the Immune Response. The Plant Cell 29 (4), pp. 726 - 745 (2017)
  50. Gol, L.; Tomé, F.; von Korff, M.: Floral transitions in wheat and barley: interactions between photoperiod, abiotic stresses and nutrient status. Journal of Experimental Botany 68 (7), pp. 1399 - 1410 (2017)
 
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