MPIPZ Scientific Publications since 2002

Journal Article (2278)

Journal Article
Basak, A. K.; Piasecka, A.; Hucklenbroich, J.; Tuerksoy, G. M.; Guan, R.; Zhang, P.; Getzke, F.; Garrido-Oter, R.; Hacquard, S.; Strzalka, K. et al.; Bednarek, P.; Yamada, K.; Nakano, R. T.: ER body-resident myrosinases and tryptophan specialized metabolism modulate root microbiota assembly. New Phytologist 241, pp. 329 - 342 (2024)
Journal Article
Castellani, M.; Zhang, M.; Thangavel, G.; Mata Sucre, Y.; Lux, T.; Campoy, J. A.; Marek, M.; Huettel, B.; Sun, H.-Q.; Mayer, K. F. X. et al.; Schneeberger, K.; Marques, A.: Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning. Nature Plants (2024)
Journal Article
Dias, Y.; Mata Sucre, Y.; Thangavel, G.; Costa, L.; Báez, M.; Houben, A.; Marques, A.; Pedrosa-Harand, A.: How diverse a monocentric chromosome can be? Repeatome and centromeric organization of Juncus effusus (Juncaceae). The Plant Journal (2024)
Journal Article
Emonet, A.; Awad, M.; Tikhomirov, N.; Vasilarou, M.; Pérez Antón, M.; Gan, X.; Novikova, P. Y.; Hay, A.: Polyploid genome assembly of Cardamine chenopodiifolia. bioRxiv: the preprint server for biology (2024)
Journal Article
Emonet, A.; Pérez Antón, M.; Neumann, U.; Dunemann, S.; Huettel, B.; Koller, R.; Hay, A.: Amphicarpic development in the emerging model organism Cardamine chenopodiifolia. bioRxiv: the preprint server for biology (2024)
Journal Article
Entila, F.; Han, X.; Mine, A.; Schulze-Lefert, P.; Tsuda, K.: Commensal lifestyle regulated by a negative feedback loop between Arabidopsis ROS and the bacterial T2SS. Nature Communications 15 (1), 456 (2024)
Journal Article
Fernandes, J. B.; Naish, M.; Lian, Q.; Burns, R.; Tock, A. J.; Rabanal, F. A.; Wlodzimierz, P.; Habring, A.; Nicholas, R. E.; Weigel, D. et al.; Mercier, R.; Henderson, I. R.: Structural variation and DNA methylation shape the centromere-proximal meiotic crossover landscape in Arabidopsis. Genome Biology 25 (1), 30 (2024)
Journal Article
Grones, C.; Eekhout, T.; Shi, D.; Neumann, M.; Berg, L. S.; Ke, Y.; Shahan, R.; Cox, K. L.; Gomez-Cano, F.; Nelissen, H. et al.; Lohmann, J. U.; Giacomello, S.; Martin, O. C.; Cole, B.; Wang, J.-W.; Kaufmann, K.; Raissig, M. T.; Palfalvi, G.; Greb, T.; Libault, M.; De Rybel, B.: Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics. The Plant Cell, koae003, pp. 1 - 17 (2024)
Journal Article
Huang, L.; Oekmen, B.; Stolze, S. C.; Kastl, M.; Khan, M.; Hilbig, D.; Nakagami, H.; Djamei, A.; Doehlemann, G.: The fungal pathogen Ustilago maydis targets the maize corepressor RELK2 to modulate host transcription for tumorigenesis. New Phytologist 241 (4), pp. 1747 - 1762 (2024)
Journal Article
Kim, H.; Kim, J.; Son, N.; Kuo, P.; Morgan, C.; Chambon, A.; Byun, D.; Park, J.; Lee, Y.; Park, Y. M. et al.; Fozard, J. A.; Guérin, J.; Hurel, A.; Lambing, C.; Howard, M.; Hwang, I.; Mercier, R.; Grelon, M.; Henderson, I. R.; Choi, K.: Control of meiotic crossover interference by a proteolytic chaperone network. Nature Plants 10, pp. 453 - 468 (2024)
Journal Article
Li, X.-M.; Jenke, H.; Strauss, S.; Bazakos, C.; Mosca, G.; Lymbouridou, R.; Kierzkowski, D.; Neumann, U.; Naik, P.; Huijser, P. et al.; Laurent, S.; Smith, R. S.; Runions, A.; Tsiantis, M.: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis. Current Biology 34, pp. 541 - 556.e515 (2024)
Journal Article
Locci, F.; Parker, J. E.: Plant NLR immunity activation and execution: a biochemical perspective. Open Biology 14 (1), 230387 (2024)
Journal Article
López, H.; Mercier, R.: The silk moth and the elephant. Current Biology 34 (11), pp. R211 - R213 (2024)
Journal Article
Ma, X.; Vanneste, S.; Chang, J.; Ambrosino, L.; Barry, K.; Bayer, T.; Bobrov, A. A.; Boston, L. B.; Campbell, J. E.; Chen, H. et al.; Chiusano, M. L.; Dattolo, E.; Grimwood, J.; He, G.; Jenkins, J.; Khachaturyan, M.; Marin-Guirao, L.; Mesterhazy, A.; Muhd, D.-D.; Pazzaglia, J.; Plott, C.; Rajasekar, S.; Rombauts, S.; Ruocco, M.; Scott, A. D.; Tan, M. P.; Van den Velde, J. D.; Vanholme, B.; Webber, J.; Wong, L. L.; Yan, M.; Sung, Y. Y.; Novikova, P. Y.; Schmutz, J.; Reusch, T. B. H.; Procaccini, G.; Olsen, J. L.; Van de Peer, Y.: Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment. Nature Plants 10, pp. 240 - 255 (2024)
Journal Article
Manosalva Perez, N.; Ferrari, C.; Engelhorn, J.; Depuydt, T.; Nelissen, H.; Hartwig, T.; Vandepoele, K.: MINI-AC: inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles. The Plant Journal 117 (1), pp. 280 - 301 (2024)
Journal Article
Mata Sucre, Y.; Parteka, L. M.; Ritz, C. M.; Gatica-Arias, A.; Félix, L. P.; Thomas, W. W.; Souza, G.; Vanzela, A. .. L.; Pedrosa-Harand, A.; Marques, A.: Oligo-barcode illuminates holocentric karyotype evolution in Rhynchospora (Cyperaceae). Frontiers in Plant Science 7 (15), 1330927 (2024)
Journal Article
Mosca, G.; Eng, R. C.; Adibi, M.; Yoshida, S.; Lane, B.; Bergheim, L.; Weber, G.; Smith, R. S.; Hay, A.: Growth and tension in explosive fruit. Current Biology (2024)
Journal Article
Ordon, J.; Thouin, J.; Nakano, R. T.; Ma, K.-W.; Zhang, P.; Huettel, B.; Garrido Oter, R.; Schulze-Lefert, P.: Chromosomal barcodes for simultaneous tracking of near-isogenic bacterial strains in plant microbiota. Nature Microbiology (2024)
Journal Article
Sajeev, N.; Koornneef, M.; Bentsink, L.: A commitment for life: Decades of unraveling the molecular mechanisms behind seed dormancy and germination. The Plant Cell, koad328, pp. 1 - 19 (2024)
Journal Article
Schmitz, G.; Linstaedter, A.; Frank, A.S. K.; Dittberner, H.; Thome, J.; Schrader, A.; Linne von Berg, K.-H.; Fulgione, A.; Coupland, G.; de Meaux, J.: Environmental filtering of life-history trait diversity in urban populations of Arabidopsis thaliana. Journal of Ecology 112 (1), pp. 14 - 27 (2024)
Journal Article
Song, W.; Liu, L.; Yu, D.; Bernardy, H.; Jirtschitzka, J.; Huang, S.; Jia, A.; Jemielniak, W.; Acker, J.; Laessle, H. et al.; Wang, J.; Shen, Q.-H.; Chen, W.; Li, P.; Parker, J. E.; Han, Z.; Schulze-Lefert, P.; Chai, J.: Substrate-induced condensation activates plant TIR domain proteins. Nature (2024)
Journal Article
Valasiadis, D.; Kollaros, M. G.; Michailidis, M.; Polychroniadou, C.; Tanou, G.; Bazakos, C.; Molassiotis, A.: Wide-characterization of high and low dry matter kiwifruit through spatiotemporal multi-omic approach. Postharvest Biology and Technology 209, 112727 (2024)
Journal Article
Xuan, Y. H.; Wang, Y.; Gao, L.; Gan, X.: Editorial: Novel insights into the regulatory role of sugar and amino acids signaling in plant-microbe interactions. Frontiers in Plant Science 14, 1261186 (2024)
Journal Article
Ai, H.; Bellstaedt, J.; Bartusch, K. S.; Eschen-Lippold, L.; Babben, S.; Balcke, G. U.; Tissier, A.; Hause, B.; Andersen, T. G.; Delker, C. et al.; Quint, M.: Auxin-dependent regulation of cell division rates governs root thermomorphogenesis. The EMBO Journal 42 (11), e111926 (2023)
Journal Article
Andersen, T. G.; Vermeer, J. E. M.: Bacterial gas-lighting of lateral root formation. PNAS 120 (17), e2303919120 (2023)
Journal Article
Arlt, C.; Wachtmeister, T.; Koehrer, K.; Stich, B.: Affordable, accurate and unbiased RNA sequencing by manual library miniaturization: A case study in barley. Plant Biotechnology Journal 21 (11), pp. 2241 - 2253 (2023)
Journal Article
Awad, M.; Gan, X.: GALA: a computational framework for de novo chromosome-by chromosome assembly with long reads. Nature Communications 14, 204 (2023)
Journal Article
Baumgarten, L.; Pieper, B.; Song, B.; Mane, S.; Lempe, J.; Lamb, J.; Cooke, E. L.; Srivastava, R.; Struett, S.; Zanko, D. et al.; Casimiro, P. G. P.; Hallab, A.; Cartolano, M.; Tattersall, A. D.; Huettel, B.; Filatov, D. A.; Pavlidis, P.; Neuffer, B.; Bazakos, C.; Schaefer, H.; Mott, R.; Gan, X.; Alonso-Blanco, C.; Laurent, S.; Tsiantis, M.: Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns. PLoS Biology 21 (7), e3002191 (2023)
Journal Article
Bhatia, N.; Wilson-Sanchez, D.; Strauss, S.; Vuolo, F.; Pieper, B.; Hu, Z.; Rambaud-Lavigne, L.; Tsiantis, M.: Interspersed expression of CUP-SHAPED COTYLEDON2 and REDUCED COMPLEXITY shapes Cardamine hirsuta complex leaf form. Current Biology (2023)
Journal Article
Bock, D. G.; Liu, J.; Novikova, P. Y.; Rieseberg, L. H.: Long-read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity. Molecular Ecology 32, pp. 1229 - 1235 (2023)
Journal Article
Brazel, A. J.; Fattorini, R.; McCarthy, J.; Franzen, R.; Rümpler, F.; Coupland, G.; O'Maoiléidigh, D. S.: AGAMOUS mediates timing of guard cell formation during gynoecium development. bioRxiv: the preprint server for biology (2023.01), 23.525231 (2023)
Journal Article
Campos Martin, R.; Schmickler, S.; Goel, M.; Schneeberger, K.; Tresch, A.: Reliable genotyping of recombinant genomes using a robust hidden Markov model. Plant Physiology 192 (2), pp. 821 - 836 (2023)
Journal Article
Cao, Y.; Kümmel, F.; Logemann, E.; Gebauer, J. M.; Lawson, A. W.; Yu, D.; Uthoff, M.; Keller, B.; Jirschitzka, J.; Baumann, U. et al.; Tsuda, K.; Chai, J.; Schulze-Lefert, P.: Structural polymorphisms within a common powdery mildew effector scaffold as a driver of co-evolution with cereal immune receptors. Proceedings of the National Academy of Sciences of the United States of America 120 (32), e2307604120 (2023)
Journal Article
Castellani, M.; Zhang, M., M.; Thangavel, G.; Mata Sucre, Y.; Lux, T.; Campoy, J. A.; Marek, M.; Huettel, B.; Sun, H.; Mayer, K. F. X. et al.; Schneeberger, K.; Marques, A.: Meiotic recombination dynamics in plants with repeat-based holocentromeres1 shed light on the primary drivers of crossover patterning. bioRxiv, 2023.04.28.538594 (2023)
Journal Article
Castro, N.; Mata-Sucre, Y.; Carvalho-Sobrinho, J.; Marques, A.; de Queiroz, R. T.; Souza, G.: Genomic stability in Cenostigma Tul., (Caesalpinioideae, Fabaceae): causes and consequences. Botanical Journal of the Linnean Society, boad043 (2023)
Journal Article
Cerise, M.; da Silveira Falavigna, V.; Rodriguez Maroto, G.; Signol, A.; Severing, E.; Gao, H.; van Driel, A.; Vincent, C.; Wilkens, S.; Iacobini, F. et al.; Formosa-Jordan, P.; Pajoro, A.; Coupland, G.: Two modes of gene regulation by TFL1 mediate its dual function in flowering time and shoot determinacy of Arabidopsis. Development 150 (23), dev202089 (2023)
Journal Article
Chai, J.; Song, W.; Parker, J. E.: New Biochemical Principles for NLR Immunity in Plants. Molecular Plant-Microbe Interactions 36 (8), pp. 468 - 475 (2023)
Journal Article
Costa, L.; Marques, A.; Buddenhagen, C. E.; Pedrosa-Harand, A.; Souza, G.: Investigating the diversification of holocentromeric satellite DNA Tyba in Rhynchospora (Cyperaceae). Annals of Botany 131 (5), pp. 813 - 825 (2023)
Journal Article
Crean, E. E.; Bilstein-Schloemer, M.; Maekawa, T.; Schulze-Lefert, P.; Saur, I. M. L.: A dominant-negative avirulence effector 1 of the barley powdery mildew fungus provides mechanistic insight to barley MLA immune receptor activation. Journal of Experimental Botany 74 (18), pp. 5854 - 5869 (2023)
Journal Article
Cullen, E.; Wang, Q.; Glover, B. J.: How do you build a nectar spur? A transcriptomic comparison of nectar spur development in Linaria vulgaris and gibba development in Antirrhinum majus. Frontiers in Plant Science 14, 1190373 (2023)
Journal Article
de Jager, N.; Shukla, V.; Koprivova, A.; Lyčka, M.; Bilalli, L.; You, Y.; Zeier, J.; Kopriva, S.; Ristova, D.: Traits linked to natural variation of sulfur content in A. thaliana leaf. Journal of Experimental Botany, erad401 (2023)
Journal Article
Elfarargi, A. F.; Gilbault, E.; Doering, N.; Neto, C.; Fulgione, A.; Weber, A. P. M.; Loudet, O.; Hancock, A. M.: Genomic Basis of Adaptation to a Novel Precipitation Regime. Molecular Biology and Evolution 40 (3), msad031 (2023)
Journal Article
Escobar-Nino, A.; Harzen, A.; Stolze, S. C.; Nakagami, H.; Fernandez-Acero, F. J.: The Adaptation of Botrytis cinerea Extracellular Vesicles Proteome to Surrounding Conditions: Revealing New Tools for Its Infection Process. Journal of Fungi 9 (9), 872 (2023)
Journal Article
Escudero, M.; Marques, A.; Lucek, K.; Hipp, A. L. L.: Genomic hotspots of chromosome rearrangements explain conserved synteny despite high rates of chromosome evolution in a holocentric lineage. Molecular Ecology (2023)
Journal Article
Feehan, J. M.; Wang, J.; Sun, X.; Choi, J.; Ahn, H. K.; Ngou, B. P.; Parker, J. E.; Jones, J. D.: Oligomerization of a plant helper NLR requires cell-surface and intracellular immune receptor activation. Proceedings of the National Academy of Sciences of the United States of America 120 (11), e2210406120 (2023)
Journal Article
Foerderer, A.; Chai, J.: Die another day: phytosulfokine at the molecular trade-off between growth and defense in plants. The EMBO Journal 42 (6), e113540 (2023)
Journal Article
Formosa-Jordan, P.; Holloway, D. M.; Diambra, L.: Editorial: Pattern formation in biology. Frontiers in Physics 11, 1161890 (2023)
Journal Article
Frommer, B.; Muellner, S.; Holtgraewe, D.; Viehoever, P.; Huettel, B.; Toepfer, R.; Weisshaar, B.; Zyprian, E.: Phased grapevine genome sequence of an Rpv12 carrier for biotechnological exploration of resistance to Plasmopara viticola. Frontiers in Plant Science 14, 1180982 (2023)
Journal Article
Gebhardt, C.: A physical map of traits of agronomic importance based on potato and tomato genome sequences. Frontiers in Genetics 14, 1197206 (2023)
Journal Article
Getzke, F.; Hassani, M. A.; Crüsemann, M.; Malisic, M.; Zhang, P.; Ishigaki, Y.; Böhringer, N.; Jiménez Fernández, A.; Wang, L.; Ordon, J. et al.; Ma, K.-W.; Thiergart, T.; Harbort, C. J.; Wesseler, H.; Miyauchi, S.; Garrido-Oter, R.; Shirasu, K.; Schäberle, T.F.; Hacquard, S.; Schulze-Lefert, P.: Co-functioning of bacterial exometabolites drives root microbiota establishment. Proceedings of the National Academy of Sciences of the United States of America 120 (15), e2221508120 (2023)
Go to Editor View