Scientific Publications since 2002

Scientific Publications since 2002

Journal Article (134)

  1. Journal Article
    Abdelsamad, A.; Pecinka, A.: Pollen-Specific Activation of Arabidopsis Retrogenes Is Associated with Global Transcriptional Reprogramming. The Plant Cell 26 (8), pp. 3299 - 3313 (2014)
  2. Journal Article
    Akman, K.; Haaf, T.; Gravina, S.; Vijg, J.; Tresch, A.: Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data. Bioinformatics 30 (13), pp. 1933 - 1934 (2014)
  3. Journal Article
    Alcazar, R.; von Reth, M.; Bautor, J.; Chae, E.; Weigel, D.; Koornneef, M.; Parker, J.: Analysis of a Plant Complex Resistance Gene Locus Underlying Immune-Related Hybrid Incompatibility and Its Occurrence in Nature. PLoS Genetics 10 (12) (2014)
  4. Journal Article
    Andrés Lalaguna, F.; Porri, A.; Torti, S.; Mateos, J. L.; Romera Branchat, M.; Luis Garcia-Martinez, J.; Fornara, F.; Gregis, V.; Kater, M. M.; Coupland, G.: SHORT VEGETATIVE PHASE reduces gibberellin biosynthesis at the Arabidopsis shoot apex to regulate the floral transition. Proceedings of the National Academy of Sciences of the United States of America 111 (26), pp. E2760 - E2769 (2014)
  5. Journal Article
    Anwer, M. U.; Boikoglou, E.; Herrero, E.; Hallstein, M.; Davis, A. M.; James, G. V.; Nagy, F.; Davis, S. J.: Natural variation reveals that intracellular distribution of ELF3 protein is associated with function in the circadian clock. ELIFE 3, eLife.02206 (2014)
  6. Journal Article
    Bassel, G. W.; Stamm, P.; Mosca, G.; Barbier de Reuille, P.; Gibbs, D. J.; Winter, R.; Janka, A.; Holdsworth, M. J.; Smith, R. S.: Mechanical constraints imposed by 3D cellular geometry and arrangement modulate growth patterns in the Arabidopsis embryo. Proceedings of the National Academy of Sciences of the United States of America 111 (23), pp. 8685 - 8690 (2014)
  7. Journal Article
    Baubec, T.; Finke, A.; Mittelsten Scheid, O.; Pecinka, A.: Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis. EMBO REPORTS 15 (4), pp. 446 - 452 (2014)
  8. Journal Article
    Becker, M.; Maximov, S.; Becker, M.; Meyer, U.; Wittmann, A.; Krämer, R.: Analysis of putative protomer crosstalk in the trimeric transporter BetP: The heterotrimer approach. Biochimica et Biophysica Acta: BBA 1837, pp. 888 - 898 (2014)
  9. Journal Article
    Belfield, E. J.; Brown, C.; Gan, X.; Jiang, C.; Baban, D.; Mithani, A.; Mott, R.; Ragoussis, J.; Harberd, N. P.: Microarray-based ultra-high resolution discovery of genomic deletion mutations. BMC GENOMICS 15 (2014)
  10. Journal Article
    Benke, A.; Urbany, C.; Marsian, J.; Shi, R.; von Wiren, N.; Stich, B.: The genetic basis of natural variation for iron homeostasis in the maize IBM population. BMC Plant Biology 14 (2014)
  11. Journal Article
    Berns, M. C.; Nordstroem, K.; Cremer, F.; Toth, R.; Hartke, M.; Simon, S.; Klasen, J. R.; Buerstel, I.; Coupland, G.: Evening Expression of Arabidopsis GIGANTEA Is Controlled by Combinatorial Interactions among Evolutionarily Conserved Regulatory Motifs. The Plant Cell 26 (10), pp. 3999 - 4018 (2014)
  12. Journal Article
    Bidzinski, P.; Noir, S.; Shahi, S.; Reinstaedler, A.; Gratkowska, D. M.; Panstruga, R.: Physiological characterization and genetic modifiers of aberrant root thigmomorphogenesis in mutants of Arabidopsis thaliana MILDEW LOCUS O genes. Plant, Cell and Environment 37 (12), pp. 2738 - 2753 (2014)
  13. Journal Article
    Bolger, A.; Scossa, F.; Bolger, M. E.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E. A.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S. A.; Schijlen, E.; Jimenez-Gomez, J. M.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L. R.; Maloof, J. N.; Sinha, N.; van Ham, R. C. H. J.; Lankhorst, R. K.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J. K. C.; Zamir, D.; Carrari, F. F.; Giovannoni, J. J.; Weigel, D.; Usadel, B.; Fernie, A. R.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Reviews Genetics 46 (9), pp. 1034 - 1038 (2014)
  14. Journal Article
    Breitenbach, H. H.; Wenig, M.; Wittek, F.; Jorda, L.; Maldonado-Alconada, A. M.; Sarioglu, H.; Colby, T.; Knappe, C.; Bichlmeier, M.; Pabst, E. et al.; Mackey, D.; Parker, J. E.; Vlot, A. C.: Contrasting Roles of the Apoplastic Aspartyl Protease APOPLASTIC, ENHANCED DISEASE SUSCEPTIBILITY1-DEPENDENT1 and LEGUME LECTIN-LIKE PROTEIN1 in Arabidopsis Systemic Acquired Resistance. Plant Physiology 165 (2), pp. 791 - 809 (2014)
  15. Journal Article
    Burmeister, T.; Bartels, G.; Groeger, D.; Trautmann, H.; Schwartz, S.; Lenz, K.; Tietze-Buerger, C.; Viardot, A.; Waesch, R.; Horst, H.-A. et al.; Reinhardt, R.; Goekbuget, N.; Hoelzer, D.; Kneba, M.; Brueggemann, M.: Single Nucleotide PolymorPhisms in IKZF1, ARID5B and CEBPE are a Risk Factor for the Development of Adult ALL. CLINICAL LYMPHOMA MYELOMA & LEUKEMIA 14, p. S114 - S114 (2014)
  16. Journal Article
    Burmeister, T.; Bartels, G.; Groeger, D.; Trautmann, H.; Schwartz, S.; Lenz, K.; Tietze-Buerger, C.; Viardot, A.; Waesch, R.; Horst, H.-A. et al.; Reinhardt, R.; Goekbuget, N.; Hoelzer, D.; Kneba, M.; Brueggemann, M.: Germline variants in IKZF1, ARID5B, and CEBPE as risk factors for adult- onset acute lymphoblastic leukemia: an analysis from the GMALL study group. HAEMATOLOGICA 99 (2), pp. E23 - E25 (2014)
  17. Journal Article
    Bus, A.; Körber, N.; Parkin, I. A. P.; Samans, B.; Snowdon, R. J.; Li, J. Q.; Stich, B.: Species- and genome-wide dissection of the shoot ionome in Brassica napus and its relationship to seedling development. Frontiers in Plant Science 5 (2014)
  18. Journal Article
    Carstens, M.; McCrindle, T. K.; Adams, N.; Diener, A.; Guzha, D. T.; Murray, S. L.; Parker, J. E.; Denby, K. J.; Ingle, R. A.: Increased Resistance to Biotrophic Pathogens in the Arabidopsis Constitutive Induced Resistance 1 Mutant Is EDS1 and PAD4-Dependent and Modulated by Environmental Temperature. PLoS One 9 (10) (2014)
  19. Journal Article
    Castaings, L.; Bergonzi, S.; Albani, M.; Kemi, U.; Savolainen, O.; Coupland, G.: Evolutionary conservation of cold-induced antisense RNAs of FLOWERING LOCUS C in Arabidopsis thaliana perennial relatives. Nature Communications 5 (2014)
  20. Journal Article
    Chandrasekar, B.; Colby, T.; Emon, A. E. K.; Jiang, J.; Tram Hong, N.; Villamor, J. G.; Harzen, A.; Overkleeft, H. S.; Van der Hoorn, R. A. L.: Broad-range Glycosidase Activity Profiling. Molelcular & Cellular Proteomics 13 (10), pp. 2787 - 2800 (2014)
  21. Journal Article
    Chopra, D.; Wolff, H.; Span, J.; Schellmann, S.; Coupland, G.; Albani, M.; Schrader, A.; Huelskamp, M.: Analysis of TTG1 function in Arabis alpina. BMC PLANT BIOLOGY 14 (2014)
  22. Journal Article
    Coego, A.; Brizuela, E.; Castillejo, P.; Ruiz, S.; Koncz, C.; del Pozo, J. C.; Pineiro, M.; Jarillo, J. A.; Paz-Ares, J.; Leon, J.: The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. The Plant Journal 77 (6), pp. 944 - 953 (2014)
  23. Journal Article
    Delker, C.; Sonntag, L.; James, G. V.; Janitza, P.; Ibanez, C.; Ziermann, H.; Peterson, T.; Denk, K.; Mull, S.; Ziegler, J. et al.; Davis, S. J.; Schneeberger, K.; Quint, M.: The DET1-COP1-HY5 Pathway Constitutes a Multipurpose Signaling Module Regulating Plant Photomorphogenesis and Thermomorphogenesis. CELL REPORTS 9 (6), pp. 1983 - 1989 (2014)
  24. Journal Article
    Dettmer, J.; Ursache, R.; Campilho, A.; Miyashima, S.; Belevich, I.; O'Regan, S.; Mullendore, D. L.; Yadav, S. R.; Lanz, C.; Beverina, L. et al.; Papagni, A.; Schneeberger, K.; Weigel, D.; Stierhof, Y.-D.; Moritz, T.; Knoblauch, M.; Jokitalo, E.; Helariutta, Y.: CHOLINE TRANSPORTER-LIKE1 is required for sieve plate development to mediate long-distance cell-to-cell communication. Nature Communications 5 (2014)
  25. Journal Article
    Doehlemann, G.; Requena, N.; Schaefer, P.; O'Connell, R.; Parker, J. E.: Reprogramming of plant cells by filamentous plant-colonizing microbes. New Phytologist 204 (4), DOI: 10.1111/nph.12938, pp. 803 - 814 (2014)
  26. Journal Article
    Doehlemann, G.; Requena, N.; Schaefer, P.; Brunner, F.; O'Connell, R.; Parker, J. E.: Reprogramming of plant cells by filamentous plant-colonizing microbes. New Phytologist 204 (4), pp. 803 - 814 (2014)
  27. Journal Article
    Doermann, P.; Kim, H.; Ott, T.; Schulze-Lefert, P.; Trujillo, M.; Wewer, V.; Hueckelhoven, R.: Cell-autonomous defense, re-organization and trafficking of membranes in plant-microbe interactions. NEW PHYTOLOGIST 204 (4), pp. 815 - 822 (2014)
  28. Journal Article
    Dohm, J. C.; Minoche, A. E.; Holtgraewe, D.; Capella-Gutierrez, S.; Zakrzewski, F.; Tafer, H.; Rupp, O.; Rossleff Soerensen, T.; Stracke, R.; Reinhardt, R. et al.; Goesmann, A.; Kraft, T.; Schulz, B.; Stadler, P. F.; Schmidt, T.; Gabaldon, T.; Lehrach, H.; Weisshaar, B.; Himmelbauer, H.: The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). NATURE 505 (7484), pp. 546 - + (2014)
  29. Journal Article
    Dong, S.; Stam, R.; Cano, L. M.; Song, J.; Sklenar, J.; Yoshida, K.; Bozkurt, T. O.; Oliva, R.; Liu, Z.; Tian, M. et al.; Win, J.; Banfield, M. J.; Jones, A. M. E.; Van der Hoorn, R. A. L.; Kamoun, S.: Effector Specialization in a Lineage of the Irish Potato Famine Pathogen. SCIENCE 343 (6170), pp. 552 - 555 (2014)
  30. Journal Article
    Duemcke, S.; Braeuer, J.; Anchang, B.; Spang, R.; Beerenwinkel, N.; Tresch, A.: Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction. Bioinformatics 30 (3), pp. 414 - 419 (2014)
  31. Journal Article
    Duemcke, S.; Mansmann, U.; Tresch, A.: A Novel Test for Independence Derived from an Exact Distribution of ith Nearest Neighbours. PLoS One 9 (10) (2014)
  32. Journal Article
    El Zawily, A. M.; Schwarzlaender, M.; Finkemeier, I.; Johnston, I. G.; Benamar, A.; Cao, Y.; Gissot, C.; Meyer, A. J.; Wilson, K.; Datla, R. et al.; Macherel, D.; Jones, N. S.; Logan, D. C.: FRIENDLY Regulates Mitochondrial Distribution, Fusion, and Quality Control in Arabidopsis. Plant Physiology 166 (2), pp. 808 - U517 (2014)
  33. Journal Article
    El-Soda, M.; Malosetti, M.; Zwaan, B. J.; Koornneef, M.; Aarts, M. G. M.: Genotype x environment interaction QTL mapping in plants: lessons from Arabidopsis. Trends in Plant Science 19 (6), pp. 390 - 398 (2014)
  34. Journal Article
    El-Soda, M.; Boer, M. P.; Bagheri, H.; Hanhart, C. J.; Koornneef, M.; Aarts, M. G. M.: Genotypeenvironment interactions affecting preflowering physiological and morphological traits of Brassica rapa grown in two watering regimes. Journal of Experimental Botany 65 (2), pp. 697 - 708 (2014)
  35. Journal Article
    Emperle, M.; Rajavelu, A.; Reinhardt, R.; Jurkowska, R. Z.; Jeltsch, A.: Cooperative DNA Binding and Protein/DNA Fiber Formation Increases the Activity of the Dnmt3a DNA Methyltransferase. The Journal of Biological Chemistry 289 (43), pp. 29602 - 29613 (2014)
  36. Journal Article
    Fischer, B.; Metzger, M.; Richardson, R.; Knyphausen, P.; Ramezani, T.; Franzen, R.; Schmelzer, E.; Bloch, W.; Carney, T. J.; Hammerschmidt, M.: p53 and TAp63 Promote Keratinocyte Proliferation and Differentiation in Breeding Tubercles of the Zebrafish. PLoS Genetics 10 (1) (2014)
  37. Journal Article
    Fricano, A.; Brandolini, A.; Rossini, L.; Sourdille, P.; Wunder, J.; Effgen, S.; Hidalgo, A.; Erba, D.; Piffanelli, P.; Salamini, F.: Crossability of Triticum urartu and Triticum monococcum Wheats, Homoeologous Recombination, and Description of a Panel of Interspecific Introgression Lines. G3-GENES GENOMES GENETICS 4 (10), pp. 1931 - 1941 (2014)
  38. Journal Article
    Garcia-Molina, A.; Xing, S. P.; Huijser, P.: A Conserved KIN17 Curved DNA-Binding Domain Protein Assembles with SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE7 to Adapt Arabidopsis Growth and Development to Limiting Copper Availability. Plant Physiology 164 (2), pp. 828 - 840 (2014)
  39. Journal Article
    Garcia-Molina, A.; Xing, S.; Huijser, P.: Functional characterisation of Arabidopsis SPL7 conserved protein domains suggests novel regulatory mechanisms in the Cu deficiency response. BMC Plant Biology 14 (2014)
  40. Journal Article
    Gloggnitzer, J.; Akimcheva, S.; Srinivasan, A.; Kusenda, B.; Riehs, N.; Stampfl, H.; Bautor, J.; Dekrout, B.; Jonak, C.; Jimenez-Gomez, J. M. et al.; Parker, J. E.; Riha, K.: Nonsense-Mediated mRNA Decay Modulates Immune Receptor Levels to Regulate Plant Antibacterial Defense. CELL HOST & MICROBE 16 (3), pp. 376 - 390 (2014)
  41. Journal Article
    Gomes, A. S.; Alves, R. N.; Stueber, K.; Thorne, M. A. S.; Smaradottir, H.; Reinhardt, R.; Clark, M. S.; Ronnestad, I.; Power, D. M.: Transcriptome of the Atlantic halibut (Hippoglossus hippoglossus). MARINE GENOMICS 18, pp. 101 - 103 (2014)
  42. Journal Article
    Griebel, T.; Maekawa, T.; Parker, J. E.: NOD-like receptor cooperativity in effector-triggered immunity. Trends in Immunology 35 (11), pp. 562 - 570 (2014)
  43. Journal Article
    Guttman, D. S.; McHardy, A. C.; Schulze-Lefert, P.: Microbial genome-enabled insights into plant-microorganism interactions. Nature Reviews Genetics 15 (12), pp. 797 - 813 (2014)
  44. Journal Article
    Habte, E.; Mueller, L. M.; Shtaya, M.; Davis, S. J.; von Korff, M.: Osmotic stress at the barley root affects expression of circadian clock genes in the shoot. Plant, Cell and Environment 37 (6), pp. 1321 - 1337 (2014)
  45. Journal Article
    Hay, A.; Pieper, B.; Cooke, E.; Mandakova, T.; Cartolano, M.; Tattersall, A. D.; Ioio, R. D.; McGowan, S. J.; Barkoulas, M.; Galinha, C. et al.; Ras, M. I.; Hofhuis, H.; Then, C.; Plieske, J.; Ganal, M.; Mott, R.; Martinez-Garcia, J. F.; Carine, M. A.; Scotland, R. W.; Gan, X.; Filatov, D. A.; Lysak, M. A.; Tsiantis, M.: Cardamine hirsuta: a versatile genetic system for comparative studies. The Plant Journal 78 (1), pp. 1 - 15 (2014)
  46. Journal Article
    Horn, F.; Habekuss, A.; Stich, B.: Genes involved in barley yellow dwarf virus resistance of maize. Theoretical and Applied Genetics 127 (12), pp. 2575 - 2584 (2014)
  47. Journal Article
    Hu, J.; Zhou, Y.; He, F.; Dong, X.; Liu, L.-Y.; Coupland, G.; Turck, F.; de Meaux, J.: miR824-Regulated AGAMOUS-LIKE16 Contributes to Flowering Time Repression in Arabidopsis. The Plant Cell 26 (5), pp. 2024 - 2037 (2014)
  48. Journal Article
    Ichikawa, M.; Hirano, T.; Enami, K.; Fuselier, T.; Kato, N.; Kwon, C.; Voigt, B.; Schulze-Lefert, P.; Baluska, F.; Sato, M. H.: Syntaxin of Plant Proteins SYP123 and SYP132 Mediate Root Hair Tip Growth in Arabidopsis thaliana. SI 55 (4), pp. 790 - 800 (2014)
  49. Journal Article
    Ihnatowicz, A.; Siwinska, J.; Meharg, A. A.; Carey, M.; Koornneef, M.; Reymond, M.: Conserved histidine of metal transporter AtNRAMP1 is crucial for optimal plant growth under manganese deficiency at chilling temperatures. New Phytologist 202 (4), pp. 1173 - 1183 (2014)
  50. Journal Article
    Jasik, J.; Schmelzer, E.: Internalized and Newly Synthesized Arabidopsis PIN-FORMED2 Pass through Brefeldin A Compartments: A New Insight into Intracellular Dynamics of the Protein by Using the Photoconvertible Fluorescence Protein Dendra2 as a Tag. MOLECULAR PLANT 7 (10), pp. 1578 - 1581 (2014)
 
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