Recent Publications
2017
Ariga H, Katori T, Tsuchimatsu T, Hirase T, Tajima Y, Parker JE, Alcázar R, Koornneef M, Hoekenga O, Lipka AE, Gore MA, Sakakibara H, Kojima M, Kobayashi Y, Iuchi S, Kobayashi M, Shinozaki K, Sakata Y, Hayashi T, Saijo Y and Taji T. 2017. NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis. Nature Plants, in press.
Birkenbihl, R.P., Liu, S., and Somssich, I.E. (2017). Transcriptional events defining plant immune responses. Curr. Opin. Plant Biol. 38, in press.
Birkenbihl, R.P., Kracher, B., Roccaro, M. and Somssich, I.E. (2017). Induced genome-wide binding of three WRKY transcription factors during early MAMP-triggered immunity. Plant Cell 29, 20-38.
Cui, H., Gobbato, E., Kracher, B., Qiu, J., Bautor, J., Parker, J. E.: A core function of EDS1 with PAD4 is to protect the salicylic acid defense sector in Arabidopsis immunity. New Phytologist 213: 1802-1817, doi: 10.1111/nph.14302 (2017) 
open access
De Montaigu, A., Oeljeklaus, J., Krahn, J., Suliman, M., Halder, V., de Ansorena, E., Nickel, S., Schlicht, M., Plihal, O., Kubiasova, K., Radova, L., Kracher, B., Toth, R., Kaschani, F., Coupland G., Kombrink, E. and Kaiser, M. (2017) The root growth-regulating brevicompanine natural products modulate the plant circadian clock. ACS Chemical Biology, in press.
Dombrowski, N., Schlaeppi, K., Agler, M., Hacquard, S., Kemen, E., Garrido Oter, R., Wunder, J., Coupland, G. and Schulze-Lefert, P., Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time. ISME Journal 11, 43-55, doi:10.1038/ismej.2016.109 (2017). open access
Durvasula, A., Fulgione, A, Gütaker, R, , Alacakaptan, S, Flood, P, Neto, C, Tsuchimatsu, T, Burbano, HA, Pico, XA, Alonso-Blanco, C, Hancock, AM. African genomes illuminate the early history of Arabidopsis thaliana, Proceedings of the National Academy of Sciences USA, doi:10.1073/pnas.1616736114. open access
Ejaz M and von Korff M (2016) Genetic control of reproductive development under high ambient temperature. Plant Physiology, 173,1: 294-306, doi: 10.1104/pp.16.01275. open access
Engelhorn, J., Turck, F.: Meta-analysis of Genome-Wide Chromatin Data (2017) In: Methods in Molecular Biology 1456: Plant Epigenetics, pp 33-50, doi: 10.1007/978-1-4899-7708-3_3.
Flood, P., & Hancock, A. (2017). The genomic basis of adaptation in plants. Current Opinion in Plant Biology, 36, 88-94. doi:10.1016/j.pbi.2017.02.003.
Frantzeskakis, L., Courville, K. J., Pluecker, L., Kellner, R., Kruse, J., Brachmann, A., Feldbrügge, M., & Göhre, V. (2017). The plant-dependent life cycle of Thecaphora thlaspeos: a smut fungus adapted to Brassicaceae. Molecular Plant-Microbe Interactions. doi:10.1094/MPMI-08-16-0164-R.
Fukunaga, S., Sogame, M., Hata, M., Singkaravanit-Ogawa, S., Piślewska-Bednarek, M., Onozawa-Komori, M., Nishiuchi, T., Hiruma, K., Saitoh, H., Terauchi, R., Kitakura, S., Inoue, Y., Bednarek, P., Schulze-Lefert, P., Takano, Y. Dysfunction of Arabidopsis MACPF domain protein activates programmed cell death via tryptophan metabolism in MAMP-triggered immunity. Plant Journal 89, 381-393, doi: 10.1111/tpj.13391 (2016). open access
Gol L, Tomé F, von Korff M (2017) Floral transitions in wheat and barley: interactions between photoperiod, abiotic stresses and nutrient status. J. Exp. Bot., doi: 10.1093/jxb/erx055. open access
Hacquard, S., Spaepen, S., Garrido‐Oter R. and Schulze‐Lefert, P. Interplay between innate immunity and the plant microbiota. Annu. Rev. Phytopathol. 55, in press (2017).
Hacquard, S. (2017). Commentary: Microbial Small Talk: Volatiles in Fungal-Bacterial Interactions. Frontiers in Microbiology, 8: 1. doi:10.3389/fmicb.2017.00001. open access
Hayama, R., Sarid-Krebs, L., Richter, R., Fernández, V., Jang, S. and G. Coupland (2017). PSEUDO RESPONSE REGULATORs stabilize CONSTANS protein to promote flowering in response to day length. EMBO Journal. doi:10.15252/embj.201693907. open access
Hillmer R, Tsuda K, Rallapalli G, Asai S, Truman W, Papke MD, Sakakibara H, Jone JDG, Myers CL, Katagiri F: The Highly Buffered Arabidopsis Immune Signaling Network Conceals the Functions of its Components. PLoS Genetics, accepted
Hofhuis, H. and Hay, A. (2017), Explosive seed dispersal. New Phytol. doi:10.1111/nph.14541. open acces
Horvath, M., Steinbiss, H. H., & Reiss, B. (2017). Gene Targeting Without DSB Induction Is Inefficient in Barley. Frontiers in Plant Science, 7: 1973. doi:10.3389/fpls.2016.01973. open access
Hyun, Y., Richter, R. and Coupland, G. (2017) Competence to Flower: Age-Controlled Sensitivity to Environmental Cues. Plant Physiology 173, 36-46, doi: 10.1104/pp.16.01523. open access
Imprialou, M., Kahles, A., Steffen, J. G., Osborne, E. J., Gan, X., Lempe, J., Bhomra, A., Belfield, E., Visscher, A., Greenhalgh, R., Harberd, N. P., Goram, R., Hein, J., Robert-Seilaniantz, A., Jones, J., Stegle, O., Kover, P., Tsiantis, M., Nordborg, M., Rätsch, G., Clark, R. M., Mott, R.: Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics, doi: 10.1534/genetics.116.192823 (2017).
Jiao, W.-B., Accinelli, G.G., Hartwig, B., Kiefer, C., Baker, D., Severing, E., Willing, E.-M., Piednoel, M., Woetzel, S., Madrid-Herrero, E.M., Huettel, B., Hümann, U., Reinhard, R., Koch, M.A., Swan, D., Clavijo, B., Coupland, G. and Schneeberger, K. (2017) Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data. Genome Research, doi: 10.1101/gr.213652.116. open access
Jiao, W.-B., Schneeberger, K. (2017) The impact of third generation genomic technologies on plant genome assembly, Current Opinion in Plant Biology, Volume 36, April 2017, Pages 64-70 doi: 10.1016/j.pbi.2017.02.002. open access
Jung, C., Pillen, K., Staiger, D., Coupland, G., & von Korff, M. (2017). Editorial: Recent Advances in Flowering Time Control. Frontiers in Plant Science, 7: 2011. doi:10.3389/fpls.2016.02011. open access
Kiefer, C., Severing, E., Karl, R., Bergonzi, S., Koch, M., Tresch, A., & Coupland, G. (2017). Divergence of annual and perennial species in the Brassicaceae and the contribution of cis-acting variation at FLC orthologues. Molecular Ecology. doi:10.1111/mec.14084.
Kroll, S., Agler, M. T., Kemen, E. (2017) Genomic dissection of host–microbe and microbe–microbe interactions for advanced plant breeding, Current Opinion in Plant Biology 36, 71-78, doi: 10.1016/j.pbi.2017.01.004.
Liller CB, Walla A, Boer MP, Hedley P, Macaulay M, Effgen S, von Korff M, van Esse GW, Koornneef M (2017) Fine mapping of a major QTL for awn length in barley using a multiparent mapping population. Theoretical and Applied Genetics, 130: 269–281, doi: 10.1007/s00122-016-2807-y. open access
Mine, A., Nobori, T., Salazar-Rondon, M. C., Winkelmüller, T. M., Anver, S., Becker, D., & Tsuda, K. (2017). An incoherent feed-forward loop mediates robustness and tunability in a plant immune network. EMBO Reports. doi:10.15252/embr.201643051.
Monniaux, M., McKim, S. M., Cartolano, M., Thévenon, E., Parcy, F., Tsiantis, M. and Hay, A. (2017), Conservation vs divergence in LEAFY and APETALA1 functions between Arabidopsis thaliana and Cardamine hirsuta. New Phytolgist, doi:10.1111/nph.14419. open access
Nakano, R.T., Pilewska-Bednarek, M., Yamada, K., Edger, P., Miyahara, M., Kondo, M., Böttcher, C., Mori, M., Nishimura, M., Schulze-Lefert*, P., Hara-Nishimura*, I. and Bednarek* P. PYK10 Myrosinase Reveals a Functional Coordination between ER Bodies and Glucosinolates in Arabidopsis thaliana. Plant Journal 89: 204–220, (2016). *co-corresponding author. open access
Née, G., Xiang, Y., & Soppe, W. (2017). The release of dormancy, a wake-up call for seeds to germinate. Current Opinion in Plant Biology, Special Issue: Growth and development, SI: 35, 8-14. doi:10.1016/j.pbi.2016.09.002. open access
Nikolov, L. A., & Tsiantis, M. (2017). Using mustard genomes to explore the genetic basis of evolutionary change. Current Opinion in Plant Biology. doi:10.1016/j.pbi.2017.02.005.
Pankin, A. & von Korff, M. (2017). Co-evolution of methods and thoughts in cereal domestication studies: a tale of barley (Hordeum vulgare). Current Opinion in Plant Biology, 36, 15-21. doi:10.1016/j.pbi.2016.12.001. open access
Riedlmeier M, Ghirardo A, Wenig M, Knappe C, Koch K, Georgii E, Dey S, Parker JE, Schnitzler JP, Vlot AC. 2017. Monoterpenes support systemic acquired resistance within and between plants. Plant Cell, in press.
Rishmawi, L., Bühler, J., Jaegle, B., Hülskamp, M., & Koornneef, M. (2017). Quantitative trait loci controlling leaf venation in Arabidopsis. Plant, Cell and Environment. doi:10.1111/pce.12938.
Runions, A., Tsiantis, M., & Prusinkiewicz, P. (2017). A common developmental program can produce diverse leaf shapes. New Phytologist. doi:10.1111/nph.14449. open access
Rymen, B., Kawamura, A., Schaefer, S., Breuer, C., Iwase, A., Shibata, M., Ikeda, M., Mitsuda, N., Koncz, C., Ohme-Takagi, M., Matsui, M., & Sugimoto, K. (2017). ABA suppresses root hair growth via OBP4 transcriptional-regulator repression of the RSL2 promoter. Plant Physiology. doi:10.1104/pp.16.01945.
Shin, J., Sánchez-Villarreal, A., Davis, A. M., Du, S. X., Berendzen, K. W., Koncz, C., Ding, Z., Li, C., & Davis, S. J. (2017). The metabolic sensor AKIN10 modulates the Arabidopsis circadian clock in a light-dependent manner. Plant, Cell and Environment. doi:10.1111/pce.12903
Templer SE, Ammon A, Pscheidt D, Ciobotea O, Schuy C, McCollum C, Sonnewald U, Hanemann A, Förster J, Ordon F, von Korff M, Voll LM. (2017) Metabolite profiling of barley flag leaves in drought and combined heat and drought stress reveals metabolic QTLs for metabolites associated with antioxidant defence. J. Exp. Bot., doi:10.1093/jxb/erx038. open access.
*Zhou Y, *Romero-Campero FJ, Gómez-Zambrano Á, **Turck F, **Calonje M. H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity. Genome Biol. 2017, 18:69. doi: 10.1186/s13059-017-1197-z. open access. *shared first **shared correspondence
Zhou Y, Tergemina E, Cui H, Förderer A, Hartwig B, Velikkakam James G, Schneeberger K, Turck F. Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2017, pii: 201620955. doi: 10.1073/pnas.1620955114. open access.
