Max-Planck-Society Repository

Recent Publications

Recent Publications

2018

Atanasov, K. E., Liu, C., Erban, A., Kopka, J., Parker, J. E., Alcázar, R. 2018. NLR mutations suppressing immune hybrid incompatibility and their effects on disease resistance. Plant Physiology, doi: 10.1104/pp.18.00462.

Cui, H., Qiu, J., Yue Zhou, Y., Bhandari, D. D., Zhao, C., Bautor, J., Parker, J. E. 2018. Antagonism of transcription factor MYC2 by EDS1/PAD4 complexes bolsters salicylic acid defense in Arabidopsis effector-triggered immunity. Molecular Plant, doi: 10.1016/j.molp.2018.05.007.

Failmezger H*, Lempe J*, Khadem N, Cartolano M, Tsiantis M, Tresch A. (2018) MowJoe: a method for automated-high throughput dissected leaf phenotyping. Plant Methods 14:27, doi: 10.1186/s13007-018-0290. open access *contributed equally

Fichman Y, Koncz Z, Reznik N, Miller G, Szabados L, Kramer K, Nakagami H, Fromm H, Koncz C, Zilberstein A. (2018) SELENOPROTEIN O is a chloroplast protein involved in ROS scavenging and its absence increases dehydration tolerance in Arabidopsis thaliana. Plant Science 270:278-291. doi: 10.1016/j.plantsci.2018.02.023.

Fulgione, A., Koornneef, M., Roux, F., Hermisson, J., Hancock, A. M. (2018) Madeiran Arabidopsis thaliana Reveals Ancient Long-Range Colonization and Clarifies Demography in Eurasia, Molecular Biology and Evolution 35, 564–574, doi: 10.1093/molbev/msx300. open access

Ibañez C, Delker C, Martinez C, Bürstenbinder K, Janitza P, Lippmann R, Ludwig W, Sun H, James GV, Klecker M, Grossjohann A, Schneeberger K, Prat S, Quint M. (2018) Brassinosteroids Dominate Hormonal Regulation of Plant Thermomorphogenesis via BZR1. Current Biology 22;28(2):303-310.e3. doi: 10.1016/j.cub.2017.11.077.

Jacob, F., Kracher, B., Mine, A., Seyfferth, C., Blanvillain-Baufumé, S., Parker, J.E., Tsuda, K., Schulze-Lefert, P., Maekawa, T. (2018) A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytologist 217, 1667-1680, doi: 10.1111/nph.14943. open access

Laenen, B., Tedder, A., Nowak, MD., Toraeng, P., Wunder, J., Wötzel, S., Steige, KA., Kourmpetis, Y., Odong, T., Drouzas, AD, Bink, M. Agren, J, Coupland, G. & Slotte, T. (2018) Demography and mating system shape the genomewide impact of purifying selection in Arabis alpina. Proceedings of the National Academy of Sciences of the United States of America 115(4), 816-821, doi/10.1073/pnas.1707492115. open access

Lazaro A., Obeng-Hinneh E., Albani M. C. (2018) Extended vernalization regulates inflorescence fate in Arabis alpina by stably silencing PERPETUAL FLOWERING 1. Plant Physiology 176, 1-15.

Nobori, T., Velásquez, A. C., Wu, J., Kvitko, B. H., Kremer, J. M., Wang, Y., He, S. Y., & Tsuda, K. (2018) Transcriptome landscape of a bacterial pathogen under plant immunity. Proceedings of the National Academy of Sciences of the United States of America, doi:10.1073/pnas.1800529115.

Ó'Maoiléidigh, DS., Stewart, D., Zheng, B., Coupland, G., Wellmer, F. (2018) Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development 145, doi:10.1242/dev.157784.

Oide M, Okajima K, Nakagami H, Kato T, Sekiguchi Y, Oroguchi T, Hikima T, Yamamoto M, Nakasako M. (2018) Blue light-excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from Arabidopsis. J Biol Chem. 293(3):963-972. doi: 10.1074/jbc.RA117.000324.

Pankin A, Altmüller J, Becker C, von Korff M (2018) Targeted resequencing reveals genomic signatures of barley domestication. New Phytologist, doi: 10.1111/nph.15077. open access

Piślewska‐Bednarek, M., Nakano, R.T., Hiruma, K., Pastorczyk, M., Sanchez‐Vallet, A., Singkaravanit‐Ogawa, S., Ciesiołka, D., Takano, Y., Molina, A., Schulze‐Lefert, P., Bednarek, P. (2018) Glutathione transferase U13 functions in pathogen‐triggered glucosinolate metabolism in Arabidopsis. Plant Physiology 176, 538–551, doi: 10.1104/pp.17.01455. open access

Rasmann S, Sánchez Vilas J, Glauser G, Cartolano M, Lempe J, Tsiantis M, Pannell JR, Heil M. (2018) Pleiotropic effect of the Flowering Locus C on plant resistance and defence against insect herbivores. Journal of Ecology 106:1244–1255, doi: 10.1111/1365-2745.12894. open access

Robbins, C., Thiergart, T., Hacquard, S., Garrido-Oter, R., Gans, W., Peiter, E., Schulze-Lefert, P.*, Spaepen, S.* (2018) Root-associated bacterial and fungal community profiles of Arabidopsis thaliana are robust across contrasting soil P levels. Phytobiomes 2, 24-34, doi: 10.1094/PBIOMES-09-17-0042-R. *co-corresponding authors open access

Robin, G. P., Kleemann, J., Neumann, U., Cabre, L., Dallery, J.-F., Lapalu, N., O’Connell, R.J. (2018) Subcellular Localization Screening of Colletotrichum higginsianum Effector Candidates Identifies Fungal Proteins Targeted to Plant Peroxisomes, Golgi Bodies, and Microtubules, Frontiers in Plant Science 9, 562. doi: 10.3389/fpls.2018.00562. open access     

Sapala, A., Runions, A., Routier-Kierzkowska, A.-L., Das Gupta, M., Hong, L., Hofhuis, H., Verger, S., Mosca, G., Li, C.-B., Hay, A., Hamant, O., Roeder, A., Tsiantis, M., Prusinkiewicz, R., & Smith, R. S. (2018). Why plants make puzzle cells, and how their shape emerges. eLife, 7: e32794, doi:10.7554/eLife.32794. open access

Sopeña-Torres, S., Jorda, L., Sanchez-Rodriguez, C., Miedes, E., Escudero, V., Swamy, S., Lopez, G., Pislewska-Bednarek, M., Lassowskat, I., Lee, J., Gu, Y., Haigis, S., Alexander, D., Pattathil, S., Muñoz-Barrios, A., Bednarek, P., Somerville, S., Schulze-Lefert, P., Hahn, M., Scheel, D., & Molina, A. (2018) YODA MAP3K kinase regulates plant immune responses conferring broad-spectrum disease resistance. New Phytologist, 218, 661-680, doi:10.1111/nph.15007.

Sun H, Ding J, Piednoël M, Schneeberger K. (2018) findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies. Bioinformatics 34(4):550-557, doi: 10.1093/bioinformatics/btx637. open access

Tsuda, K (2018) Division of Tasks: Defense by the Spatial Separation of Antagonistic Hormone Activities. Plant and Cell Physiology 59: 3-4.

Yokoo S, Inoue S, Suzuki N, Amakawa N, Matsui H, Nakagami H, Takahashi A, Arai R, Katou S. (2018) Comparative analysis of plant isochorismate synthases reveals structural mechanisms underlying their distinct biochemical properties. Biosci Rep. 38(2). pii: BSR20171457. doi: 10.1042/BSR20171457. open access

Zhou, Y., Wang, Y., Krause, K., Yang, T., Dongus, J. A., Zhang, Y., Turck, F. (2018) Telobox motifs recruit CLF/SWN–PRC2 for H3K27me3 deposition via TRB factors in Arabidopsis. Nature Genetics, doi: 10.1038/s41588-018-0109-9. open access

2017

Acevedo-Garcia, J., Gruner, K., Reinstaedler, A., Kemen, A., Kemen, E., Cao, L., Takken, F. L. W., Reitz, M. U., Schafer, P., O'Connell, R. J., Kusch, S., Kuhn, H., & Panstruga, R. (2017). The powdery mildew-resistant Arabidopsis mlo2 mlo6 mlo12 triple mutant displays altered infection phenotypes with diverse types of phytopathogens. Scientific Reports 7: 9319. doi:10.1038/s41598-017-07188-7. open access

Adeyemo, S., Chavarriaga, P., Tohme, J., Fregene, M., Davis, S. J., & Setter, T. L. (2017). Overexpression of Arabidopsis FLOWERING LOCUS T (FT) gene improves floral development in cassava (Manihot esculenta, Crantz). PLoS One, 12(7): e0181460. doi:10.1371/journal.pone.0181460. open access

Almario, J., Jeena, G., Wunder, J., Langen, G., Zuccaro, A., Coupland, G., Bucher, M. (2017) Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition PNAS 114 (44): E9403-E9412, doi:10.1073/pnas.1710455114. open access

Alvarez, M. F., Angarita, M., Delgado, M. C., Garcia, C., Jimenez-Gomez, J. M., Gebhardt, C., & Mosquera, T. (2017). Identification of Novel Associations of Candidate Genes with Resistance to Late Blight in Solanum tuberosum Group Phureja. Frontiers in Plant Science 8: 1040. doi:10.3389/fpls.2017.01040. open access

Ariga H, Katori T, Tsuchimatsu T, Hirase T, Tajima Y, Parker JE, Alcázar R, Koornneef M, Hoekenga O, Lipka AE, Gore MA, Sakakibara H, Kojima M, Kobayashi Y, Iuchi S, Kobayashi M, Shinozaki K, Sakata Y, Hayashi T, Saijo Y and Taji T. (2017) NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis. Nature Plants 26:17072, doi: 10.1038/nplants.2017.72. open access

Balcke, G. U., Bennewitz, S., Bergau, N., Athmer, B., Henning, A., Majovsky, P., Jimenez-Gomez, J. M., Hoehenwarter, W., & Tissier, A. (2017). Multi-Omics of Tomato Glandular Trichomes Reveals Distinct Features of Central Carbon Metabolism Supporting High Productivity of Specialized Metabolites. Plant Cell 29: 960-983. doi:10.1105/tpc.17.00060. open access

Berens, M., Berry, H. M., Mine, A., Argueso, C. T., & Tsuda, K. (2017). Evolution of Hormone Signaling Networks in Plant Defense. Annu. Rev. Phytopathol. 55: 401-425. doi:10.1146/annurev-phyto-080516-035544.

Birkenbihl, R.P., Liu, S., and Somssich, I.E. (2017). Transcriptional events defining plant immune responses. Curr. Opin. Plant Biol. 38: 1-9, 10.1016/j.pbi.2017.04.004.

Birkenbihl, R.P., Kracher, B., Roccaro, M. and Somssich, I.E. (2017). Induced genome-wide binding of three WRKY transcription factors during early MAMP-triggered immunity. Plant Cell 29: 20-38. open access

Chandrasekar, B., Tram Hong, N., & Van der Hoorn, R. A. L. (2017). Inhibitor Discovery by Convolution ABPP. ACTIVITY-BASED PROTEOMICS: METHODS AND PROTOCOLS, 47-56. doi:10.1007/978-1-4939-6439-0_4.

Chao, Y., Li, L., Girodat, D., Foerstner, K. U., Said, N., Corcoran, C., Smiga, M., Papenfort, K., Reinhardt, R., Wieden, H.-J., Luisi, B. F., & Vogel, J. (2017). In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways. Molecular Cell 65(1): 39-51. doi:10.1016/j.molcel.2016.11.002.

Chen, C.-L., van der Schoot, H., Dehghan, S., Kamei, C. L. A., Schwarz, K.-U., Meyer, H., Visser, R. G. F., & van der Linden, C. G. (2017). Genetic Diversity of Salt Tolerance in Miscanthus. Frontiers in Plant Science, 8: 187. doi:10.3389/fpls.2017.00187. open access

Costa, M.-C.-D., Artur, M. A. S., Maia, J., Jonkheer, E., Derks, M. F. L., Nijveen, H., Williams, B., Mundree, S. G., Jimenez-Gomez, J. M., Hesselink, T., Schijlen, E. G. W. M., Ligterink, W., Oliver, M. J., Farrant, J. M., & Hilhorst, H. W. M. (2017). A footprint of desiccation tolerance in the genome of Xerophyiita viscosa. Nature Plants 3(4): 17038. doi:10.1038/nplants.2017.38.

Cui, H., Gobbato, E., Kracher, B., Qiu, J., Bautor, J., Parker, J. E.: A core function of EDS1 with PAD4 is to protect the salicylic acid defense sector in Arabidopsis immunity. New Phytologist 213: 1802-1817, doi: 10.1111/nph.14302 (2017) open access

De Montaigu , A. & Coupland, G. (2017) The timing of GIGANTEA expression during day/ night cycles varies with the geographical origin of Arabidopsis accessions. Plant Signaling & Behavior, 12:7, e1342026, doi: 10.1080/15592324.2017.1342026. open access

De Montaigu, A., Oeljeklaus, J., Krahn, J., Suliman, M., Halder, V., de Ansorena, E., Nickel, S., Schlicht, M., Plihal, O., Kubiasova, K., Radova, L., Kracher, B., Toth, R., Kaschani, F., Coupland G., Kombrink, E. and Kaiser, M. (2017) The root growth-regulating brevicompanine natural products modulate the plant circadian clock. ACS Chemical Biology, 12(6): 1466–1471. open access

De Simone, A., Hubbard, R., Vinegra de la Torre, N., Velappan, Y., Wilson, M., Considine, M. J., Soppe, W. J. J., & Foyer, C. H. (2017). Redox Changes During the Cell Cycle in the Embryonic Root Meristem of Arabidopsis thaliana. Antioxiands & Redox Signaling, 27(18): 1505-1519. doi:10.1089/ars.2016.6959. open access

Dombrowski, N., Schlaeppi, K., Agler, M., Hacquard, S., Kemen, E., Garrido Oter, R., Wunder, J., Coupland, G. and Schulze-Lefert, P., Root microbiota dynamics of perennial Arabis alpina are dependent on soil residence time but independent of flowering time. ISME Journal 11: 43-55, doi:10.1038/ismej.2016.109 (2017). open access

Donnart, T., Piednoel, M., Higuet, D., & Bonnivard, E. (2017). Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi. BMC Genomics 18: 410. doi:10.1186/s12864-017-3795-2. open access

Duarte-Delgado, D., Juyo, D., Gebhardt, C., Sarmiento, F., & Mosquera-Vasquez, T. (2017). Novel SNP markers in InvGE and SssI genes are associated with natural variation of sugar contents and frying color in Solanum tuberosum Group Phureja. BMC Medical Genetics 18: 23. doi:10.1186/s12863-017-0489-3. open access

Durvasula, A., Fulgione, A, Gütaker, R, , Alacakaptan, S, Flood, P, Neto, C, Tsuchimatsu, T, Burbano, HA, Pico, XA, Alonso-Blanco, C, Hancock, AM. African genomes illuminate the early history of Arabidopsis thaliana, Proceedings of the National Academy of Sciences USA, 114(20):5213-5218doi:10.1073/pnas.1616736114. open access

Ejaz M and von Korff M (2016) Genetic control of reproductive development under high ambient temperature. Plant Physiology 173: 294-306, doi: 10.​1104/​pp.​16.​01275. open access

Engelhorn, J., Turck, F.: Meta-analysis of Genome-Wide Chromatin Data (2017) In: Methods in Molecular Biology 1456: Plant Epigenetics, pp 33-50, doi: 10.1007/978-1-4899-7708-3_3.

Flood, P., & Hancock, A. (2017). The genomic basis of adaptation in plants. Current Opinion in Plant Biology 36: 88-94. doi:10.1016/j.pbi.2017.02.003.

Frantzeskakis, L., Courville, K. J., Pluecker, L., Kellner, R., Kruse, J., Brachmann, A., Feldbrügge, M., & Göhre, V. (2017). The plant-dependent life cycle of Thecaphora thlaspeos: a smut fungus adapted to Brassicaceae. Molecular Plant-Microbe Interactions 30: 271-282, doi:10.1094/MPMI-08-16-0164-R.

Fukunaga, S., Sogame, M., Hata, M., Singkaravanit-Ogawa, S., Piślewska-Bednarek, M., Onozawa-Komori, M., Nishiuchi, T., Hiruma, K., Saitoh, H., Terauchi, R., Kitakura, S., Inoue, Y., Bednarek, P., Schulze-Lefert, P., Takano, Y. Dysfunction of Arabidopsis MACPF domain protein activates programmed cell death via tryptophan metabolism in MAMP-triggered immunity. Plant Journal 89: 381-393, doi: 10.1111/tpj.13391 (2017). open access

Furlan G, Nakagami H, Eschen-Lippold L, Jiang X, Majovsky P, Kowarschik K, Hoehenwarter W, Lee J, Trujillo M, Changes in PUB22 Ubiquitination Modes Triggered by MITOGEN-ACTIVATED PROTEIN KINASE3 Dampen the Immune Response, Plant Cell, 29(4):726-745 (2017).

Gol L, Tomé F, von Korff M (2017) Floral transitions in wheat and barley: interactions between photoperiod, abiotic stresses and nutrient status. Journal of Experimental Botany 68(7):1399-1410, doi: 10.1093/jxb/erx055. open access

Hacquard, S. (2017). Commentary: Microbial Small Talk: Volatiles in Fungal-Bacterial Interactions. Frontiers in Microbiology, 8:1. doi:10.3389/fmicb.2017.00001. open access

Hacquard, S., Spaepen, S., GarridoOter R. and Schulze Lefert, P. Interplay between innate immunity and the plant microbiota. Annu. Rev. Phytopathol. 55: 565-89, doi: 10.1146/annurev-phyto-080516-035623 (2017).

Hartl, M., Fuessl, M., Boersema, P. J., Jost, J.-O., Kramer, K., Bakirbas, A., Sindlinger, J., Ploechinger, M., Leister, D., Uhrig, G., Moorhead, G. B. G., Cox, J., Salvucci, M. E., Schwarzer, D., Mann, M., & Finkemeier, I. (2017). Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis. Molecular Systems Biology 13(10): 949. doi:10.15252/msb.20177819. open access

Hayama, R., Sarid-Krebs, L., Richter, R., Fernández, V., Jang, S. and G. Coupland (2017). PSEUDO RESPONSE REGULATORs stabilize CONSTANS protein to promote flowering in response to day length. EMBO Journal. 36(7): 904-918, doi:10.15252/embj.201693907. open access

Hervieux, N., Tsugawa, S., Fruleux, A., Dumond, M., Routier-Kierzkowska, A.-L., Komatsuzaki, T., Boudaoud, A., Larkin, J. C., Smith, R. S., Li, C.-B., & Hamant, O. (2017). Mechanical Shielding of Rapidly Growing Cells Buffers Growth Heterogeneity and Contributes to Organ Shape Reproducibility. Current Biology 27(22): 3468-3479.e4. doi:10.1016/j.cub.2017.10.033.

Hillmer R, Tsuda K, Rallapalli G, Asai S, Truman W, Papke MD, Sakakibara H, Jone JDG, Myers CL, Katagiri F: The Highly Buffered Arabidopsis Immune Signaling Network Conceals the Functions of its Components. PLoS Genetics 13(5): e1006639 (2017). open acces

Hofhuis, H. and Hay, A. (2017), Explosive seed dispersal. New Phytologist 216(2): 339-342.doi:10.1111/nph.14541. open acces

Horvath, M., Steinbiss, H. H., & Reiss, B. (2017). Gene Targeting Without DSB Induction Is Inefficient in Barley. Frontiers in Plant Science 7: 1973. doi:10.3389/fpls.2016.01973. open access

Hughes, P. W. (2017). Between semelparity and iteroparity: Empirical evidence for a continuum of modes of parity. Ecology and Evolution 7(20): 8232-8261. doi:10.1002/ece3.3341. open acces

Huot B, Castroverde CDM, Velásquez AC, Hubbard E, Pulman JA, Yao J, Childs KL, Tsuda K, Montgomery BL, He SY: Dual impact of elevated temperature on plant defence and bacterial virulence in Arabidopsis. Nature Communications, 8: 1808 (2017).

Hyun, Y., Richter, R. and Coupland, G. (2017) Competence to Flower: Age-Controlled Sensitivity to Environmental Cues. Plant Physiology 173: 36-46, doi: 10.1104/pp.16.01523. open access

Imprialou, M., Kahles, A., Steffen, J. G., Osborne, E. J., Gan, X., Lempe, J., Bhomra, A., Belfield, E., Visscher, A., Greenhalgh, R., Harberd, N. P., Goram, R., Hein, J., Robert-Seilaniantz, A., Jones, J., Stegle, O., Kover, P., Tsiantis, M., Nordborg, M., Rätsch, G., Clark, R. M., Mott, R.: Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics 205(4): 1425-1441, doi: 10.1534/genetics.116.192823 (2017). open access

Jiao, W.-B., Accinelli, G.G., Hartwig, B., Kiefer, C., Baker, D., Severing, E., Willing, E.-M., Piednoel, M., Woetzel, S., Madrid-Herrero, E.M., Huettel, B., Hümann, U., Reinhard, R., Koch, M.A., Swan, D., Clavijo, B., Coupland, G. and Schneeberger, K. (2017) Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data. Genome Research 27(5): 778-786, doi: 10.1101/gr.213652.116. open access

Jiao, W.-B., Schneeberger, K. (2017) The impact of third generation genomic technologies on plant genome assembly, Current Opinion in Plant Biology 36, 64-70, doi: 10.1016/j.pbi.2017.02.002. open access

Jones, A., Forero-Vargas, M., Withers, S. P., Smith, R. S., Traas, J., Dewitte, W., & Murray, J. A. H. (2017). Cell-size dependent progression of the cell cycle creates homeostasis and flexibility of plant cell size. Nature Communications, 8: 15060. doi:10.1038/ncomms15060. open access

Jung, C., Pillen, K., Staiger, D., Coupland, G., & von Korff, M. (2017). Editorial: Recent Advances in Flowering Time Control. Frontiers in Plant Science 7: 2011. doi:10.3389/fpls.2016.02011. open access

Kiefer, C., Severing, E., Karl, R., Bergonzi, S., Koch, M., Tresch, A., & Coupland, G. (2017). Divergence of annual and perennial species in the Brassicaceae and the contribution of cis-acting variation at FLC orthologues. Molecular Ecology 26: 3437-3457. doi:10.1111/mec.14084. open access

Kirschner GK, Stahl Y, Von Korff M, Simon R (2017) Unique and Conserved Features of the Barley Root Meristem. Front Plant Sci. 21, 8:1240. doi: 10.3389/fpls.2017.01240. open access

Kovacs, J., Poor, P., Kaschani, F., Chandrasekar, B., Hong, T. N., Misas-Villamil, J. C., et al. (2017). Proteasome Activity Profiling Uncovers Alteration of Catalytic beta 2 and beta 5 Subunits of the Stress-Induced Proteasome during Salinity Stress in Tomato Roots. Frontiers in Plant Science 8: 107. doi:10.3389/fpls.2017.00107. open access

Kroll, S., Agler, M. T., Kemen, E. (2017) Genomic dissection of host–microbe and microbe–microbe interactions for advanced plant breeding, Current Opinion in Plant Biology 36: 71-78, doi: 10.1016/j.pbi.2017.01.004.

Kruse, J., Doehlemann, G., Kemen, E., & Thines, M. (2017). Asexual and sexual morphs of Moesziomyces revisited. IMA Fungus 8: 117-129. doi:10.5598/imafungus.2017.08.01.09. open access

Kuhn, H., Lorek, J., Kwaaitaal, M., Consonni, C., Becker, K., Micali, C., Ver Loren van Themaat, E., Bednarek, P., Raaymakers, T.., Appiano, M., Bai, Y., Meldau, D., Baum, S., Conrath, U., Feussner, I., & Panstruga, R. (2017). Key Components of Different Plant Defense Pathways Are Dispensable for Powdery Mildew Resistance of the Arabidopsis mlo2 mlo6 mlo12 Triple Mutant. Frontiers in Plant Science, 8: 1006. doi:10.3389/fpls.2017.01006. open access

Lee, S. E., Gupta, R., Jayaramaiah, R. H., Lee, S. H., Wang, Y., Park, S.-R., & Kim, S. T. (2017). Global Transcriptome Profiling of Xanthomonas oryzae pv. oryzae under in planta Growth and in vitro Culture Conditions. Plant Pathology Journal 33(5): 458-466. doi:10.5423/PPJ.OA.04.2017.0076. open access

Liller CB, Walla A,  Boer MP, Hedley P, Macaulay M, Effgen S, von Korff M, van Esse GW, Koornneef M (2017) Fine mapping of a major QTL for awn length in barley using a multiparent mapping population. Theoretical and Applied Genetics, 130: 269–281, doi: 10.1007/s00122-016-2807-y. open access

Liu, L., Jiang, Y., Zhang, X., Wang, X., Wang, Y., Han, Y., Coupland, G., Jin, J. B., Searle, I., Fu, Y.-F., & Chen, F. (2017). Two SUMO Proteases SUMO PROTEASE RELATED TO FERTILITY1 and 2 Are Required for Fertility in Arabidopsis. Plant Physiology 175(4): 1703-1719. doi:10.1104/pp.17.00021. open acces

Liu, S., Ziegler, J., Zeier, J., Birkenbihl, R.P., Somssich, I.E. (2017). Botrytis cinerea B05.10 promotes disease development in Arabidopsis by suppressing WRKY33-mediated host immunity. Plant Cell Environ. 40: 2189-2206.

Maekawa, T., Schulze-Lefert, P. (2017) Caught in the jump. Science 357, 31-32, doi: 10.1126/science.aan8287.

Mateos, J. L., Tilmes, V., Madrigal, P., Severing, E., Richter, R., Rijkenberg, C. W. M., Krajewski, P., & Coupland, G. (2017). Divergence of regulatory networks governed by the orthologous transcription factors FLC and PEP1 in Brassicaceae species. Proceedings of the National Academy of Sciences of the United States of America 114(51): E11037-E11046. doi:10.1073/pnas.1618075114. open acces

Matsui H, Nomura Y, Egusa M, Hamada T, Hyon GS, Kaminaka H, Watanabe Y, Ueda T, Trujillo M, Shirasu K, Nakagami H, The GYF domain protein PSIG1 dampens the induction of cell death during plant-pathogen interactions, PLoS Genetics, 13(10):e1007037 (2017). open access

McKim, S. M., Routier-Kierzkowska, A.-L., Monniaux, M., Kierzkowski, D., Pieper, B., Smith, R. S., Tsiantis, M., & Hay, A. (2017). Seasonal Regulation of Petal Number. Plant Physiology, 175(2): 886-903. doi:10.1104/pp.17.00563. open access

Mellor, N., Adibi, M., El-Showk, S., De Rybel, B., King, J., Mahonen, A. P., Weijers, D., & Bishopp, A. (2017). Theoretical approaches to understanding root vascular patterning: a consensus between recent models. Journal of Experimental Botany, SI, 68: 5-16. doi:10.1093/jxb/erw410.

Merini, W., Romero-Campero, F. J., Gomez-Zambrano, A., Zhou, Y., Turck, F., & Calonje, M. (2017). The Arabidopsis Polycomb Repressive Complex 1 (PRC1) components AtBMI1A, B and C impact gene networks throughout all stages of plant development. Plant Physiology 173: 627-641. doi:10.1104/pp.16.01259.

Metge, F., Czaja-Hasse, L., Reinhardt, R., & Dieterich, C. (2017). FUCHS - towards full circular RNA characterization using RNAseq. PeerJ 5: e2934. doi:10.7717/peerj.2934 . open access

Mine, A., Berens, M. L., Nobori, T., Anver, S., Kaori, F., Winkelmueller, T. M., Takeda, A., Becker, D., & Tsuda, K. (2017). Pathogen exploitation of an abscisic acid- and jasmonate-inducible MAPK phosphatase and its interception by Arabidopsis immunity. Proceedings of the National Academy of Sciences of the United States of America 114: 7456-7461. doi:10.1073/pnas.1702613114

Mine, A., Nobori, T., Salazar-Rondon, M. C., Winkelmüller, T. M., Anver, S., Becker, D., & Tsuda, K. (2017). An incoherent feed-forward loop mediates robustness and tunability in a plant immune network. EMBO Reports 18(3): 464-476, doi:10.15252/embr.201643051.

Misas-Villamil, J., van der Burgh, A. M., Grosse-Holz, F., Bach-Pages, M., Kovács, J., Kaschani, F., Schilasky, S., Emon, A. E. K., Ruben, M., Kaiser, M., Overkleeft, H. S., & Van der Hoorn, R. A. L. (2017). Subunit-selective proteasome activity profiling uncovers uncoupled proteasome subunit activities during bacterial infections. The Plant Journal, 90(2): 418-430. doi:10.1111/tpj.13494.

Mizzotti, C., Galliani, B. M., Dreni, L., Sommer, H., Bombarely, A., & Masiero, S. (2017). ERAMOSA controls lateral branching in snapdragon. Scientific Reports 7: 41319. doi:10.1038/srep41319.

Moltaji, A., Runions, A., & Samavati, F. F. (2017). Subdivision and multiresolution for PUPs. COMPUTERS & GRAPHICS-UK 62: 53-66. doi:10.1016/j.cag.2016.12.001.

Monniaux, M., McKim, S. M., Cartolano, M., Thévenon, E., Parcy, F., Tsiantis, M. and Hay, A. (2017), Conservation vs divergence in LEAFY and APETALA1 functions between Arabidopsis thaliana and Cardamine hirsuta. New Phytologist 216 (2):549-561, doi:10.1111/nph.14419. open access

Mosca, G., Sapala, A., Strauß, S., Routier-Kierzkowska, A.-L., & Smith, R. S. (2017). On the micro-indentation of plant cells in a tissue context. Physical Biology 14(1): 015003. doi:10.1088/1478-3975/aa5698. open acces

Mukhtar, S.M., Liu, X., and Somssich, I.E. (2017). Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal. Behav.12, e1363945.

Nakano, R.T., Pilewska-Bednarek, M., Yamada, K., Edger, P., Miyahara, M., Kondo, M., Böttcher, C., Mori, M., Nishimura, M., Schulze-Lefert*, P., Hara-Nishimura*, I. and Bednarek* P. PYK10 Myrosinase Reveals a Functional Coordination between ER Bodies and Glucosinolates in Arabidopsis thaliana. Plant Journal 89: 204–220, DOI: 10.1111/tpj.13377 (2017). *co-corresponding autho r. open access

Née, G.; Kramer, K.; Nakabayashi, K.; Yuan, B.; Xiang, Y.; Miatton, E.; Finkemeier, I.; Soppe, W.: Delay of germination requires PP2C phosphatases of the ABA signalling pathway to control seed dormancy (2017) Nature Communications 8:72 doi:10.1038/s41467-017-00113-6. open access

Née, G., Xiang, Y., & Soppe, W. (2017). The release of dormancy, a wake-up call for seeds to germinate. Current Opinion in Plant Biology, Special Issue: Growth and development, SI: 35, 8-14. doi:10.1016/j.pbi.2016.09.002. open access

Nikolov, L. A., & Tsiantis, M. (2017). Using mustard genomes to explore the genetic basis of evolutionary change. Current Opinion in Plant Biology 36: 119-128, doi:10.1016/j.pbi.2017.02.005.

O'Maoiléidigh, D. S. (2017). Intrafamily Protein Interactions Contribute to DNA Localization. Plant Cell 29(9): 2076-2077. doi:10.1105/tpc.17.00735. open access

Oka, R.*, Zicola, J.*, Weber, B.*, Anderson, S.N., Hodgman, C., Gent, J. I., Wesselink, J.-J., Springer, N. M., Hoefsloot, H.C.J., Turck, F. and M. Stam (2017) Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize. Genome Biology 18:137, doi: 10.1186/s13059-017-1273-4. *contributed equally, ** joint corresponding authors open access

Oral, M., Colleter, J., Bekaert, M., Taggart, J. B., Palaiokostas, C., McAndrew, B. J., Vandeputte, M., Chatain, B., Kuhl, H., Reinhardt, R., Peruzzi, S., & Penman, D. J. (2017). Gene-centromere mapping in meiotic gynogenetic European seabass. BMC Genomics, 18: 449. doi:10.1186/s12864-017-3826-z. open access

Pajoro, A., Severing, E., Angenent, G. C., & Immink, R. G. H. (2017). Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants. Genome Biology 18: 102. doi:10.1186/s13059-017-1235-x. open access

Pankin, A. & von Korff, M. (2017). Co-evolution of methods and thoughts in cereal domestication studies: a tale of barley (Hordeum vulgare). Current Opinion in Plant Biology, 36: 15-21. doi:10.1016/j.pbi.2016.12.001. open access

Plötner B, Nurmi M, Fischer A, Watanabe M, Schneeberger K, Holm S, Vaid N, Schöttler MA, Walther D, Hoefgen R, Weigel D, Laitinen RAE. (2017) Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. Plant Journal 91(2):251-262. doi: 10.1111/tpj.13560. open access

Pruzinska, A., Shindo, T., Niessen, S., Kaschani, F., Toth, R., Millar, A. H., & Van der Hoorn, R. A. L. (2017) Major Cys protease activities are not essential for senescence in individually darkened Arabidopsis leaves. BMC Plant Biology, 17: 4. doi:10.1186/s12870-016-0955-5. open access

Rast, P., Gloeckner, I., Boedeker, C., Jeske, O., Wiegand, S., Reinhardt, R., Schumann, P., Rohde, M., Spring, S., Gloeckner, F. O., Jogler, C., & Jogler, M. (2017). Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov in the Family Opitutaceae of the Verrucomicrobial Subdivision 4. Frontiers in Microbiology 8: 202. doi:10.3389/fmicb.2017.00202. open access

Rebeiz, M., & Tsiantis, M. (2017). Enhancer evolution and the origins of morphological novelty. Current Opinion in Genetics & Development 45, 115-123. doi:10.1016/j.gde.2017.04.006.

Riedlmeier M, Ghirardo A, Wenig M, Knappe C, Koch K, Georgii E, Dey S, Parker JE, Schnitzler JP, Vlot AC. (2017) Monoterpenes support systemic acquired resistance within and between plants. Plant Cell 29(6):1440-1459,

Rishmawi, L., Bühler, J., Jaegle, B., Hülskamp, M., & Koornneef, M. (2017). Quantitative trait loci controlling leaf venation in Arabidopsis. Plant, Cell and Environment 40: 1429-1441 doi:10.1111/pce.12938.

Runions, A., & Tsiantis, M. (2017). The shape of things to come: From typology to predictive models for leaf diversity. American Journal of Botany 104(10): 1437-1441. doi:10.3732/ajb.1700251.

Runions, A., Tsiantis, M., & Prusinkiewicz, P. (2017). A common developmental program can produce diverse leaf shapes. New Phytologist 216: 401–418, doi:10.1111/nph.14449. open access

Rymen, B., Kawamura, A., Schaefer, S., Breuer, C., Iwase, A., Shibata, M., Ikeda, M., Mitsuda, N., Koncz, C., Ohme-Takagi, M., Matsui, M., & Sugimoto, K. (2017). ABA suppresses root hair growth via OBP4 transcriptional-regulator repression of the RSL2 promoter. Plant Physiology 173: 1750-1762, doi:10.1104/pp.16.01945. open access

Samad, S., Kurokura, T., Koskela, E., Toivainen, T., Patel, V., Mouhu, K., Sargent, D. J., & Hytonen, T. (2017). Additive QTLs on three chromosomes control flowering time in woodland strawberry (Fragaria vesca L.). HORTICULTURE RESEARCH 4: 17020. doi:10.1038/hortres.2017.20. open access

Schiessl, S., Huettel, B., Kuehn, D., Reinhardt, R., & Snowdon, R. J. (2017). Targeted deep sequencing of flowering regulators in Brassica napus reveals extensive copy number variation. Scientific Data, 4: 170013. doi:10.1038/sdata.2017.13. open access

Schiessl, S., Huettel, B., Kuehn, D., Reinhardt, R., & Snowdon, R. (2017). Post-polyploidisation morphotype diversification associates with gene copy number variation. Scientific Reports, 7: 41845. doi:10.1038/srep41845. open access

Schiessl, S. V., Huettel, B., Kuehn, D., Reinhardt, R., & Snowdon, R. J. (2017). Flowering Time Gene Variation in Brassica Species Shows Evolutionary Principles. Frontiers in Plant Science 8: 1742. doi:10.3389/fpls.2017.01742. open access

Schneeberger, K., & Henderson, I. (2017). Editorial overview: Genome studies and molecular genetics. Current Opinion in Plant Biology 36: IV-V. doi:10.1016/j.pbi.2017.03.017.

Schoenhals, E. M., Ding, J., Ritter, E., Paulo, M. J., Cara, N., Tacke, E., Hofferbert, H.-R., Luebeck, J., Strahwald, J., & Gebhardt, C. (2017). Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array. BMC Genomics 18: 642. doi:10.1186/s12864-017-3979-9. open access

Sczyrba, A.*, Hofmann, P.*, Belmann, P*., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., Bremges, A., Fritz, A., Garrido-Oter, R., Sparholt Jørgensen, T., Shapiro, N., Blood, P. D., Gurevich, A., Bai, Y., Tuarev, D., DeMaere, M. Z., Chikhi, R., Nagarajan, N., Hestbjerg Hansen, L., Sørensen, S. J., Chia, B. K. H., Denis, B., Froula, J. L., Wang, Z., Egan, R., Don Kang, D., Cook, J., Deltel, C., Beckstette, M., Lemaitre, C., Peterlongo, P., Rizk, G., Lavenier, D., Wu, Y.-W., Singer, S. W., Jain, C., Strous, M., Klingenberg, H., Meinicke, P., Barton, M., Lingner, T., Lin, H.-H., Liao, Y.-C., Silva, G. G. Z., Cuevas, D. A., Edwards, R. A., Saha, S., Piro, V. C., Renard, B. Y., Hill, C. M., Pop, M., Klenk, H.-P., Goeker, M., Kyrpides, N., Woyke, T., Vorholt, J., Schulze-Lefert, P., Rubin, E. M., Darling, A. E., Rattei, T., McHardy, A. C. Critical Assessment of Metagenome Interpretation – a comprehensive benchmark of computational metagenomics software. Nature Methods 14: 1063–1071, doi:10.1038/nmeth.4458 (2017). * contributed equally.

Seah, B. K. B., Schwaha, T., Volland, J.-M., Huettel, B., Dubilier, N., & Gruber-Vodicka, H. R. (2017). Specificity in diversity: single origin of a widespread ciliate-bacteria symbiosis. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 284(1858): 20170764. doi:10.1098/rspb.2017.0764. open access

Shigenaga, A. M., Berens, M. L., Tsuda, K., & Argueso, C. T. (2017). Towards engineering of hormonal crosstalk in plant immunity. Current Opinion in Plant Biology 38: 164-172. doi:10.1016/j.pbi.2017.04.021.

Shin, J., Sánchez-Villarreal, A., Davis, A. M., Du, S. X., Berendzen, K. W., Koncz, C., Ding, Z., Li, C., & Davis, S. J. (2017). The metabolic sensor AKIN10 modulates the Arabidopsis circadian clock in a light-dependent manner. Plant, Cell and Environment 40(7): 997-1008. doi:10.1111/pce.12903

Sinclair, S.A., Larue, C., Bonk, L., Khan, A., Castillo-Michel, H., Stein, R.J., Grolimund, D., Begerow, D., Neumann, U., Haydon, M.J. and Krämer, U. (2017) Etiolated seedling development requires repression of photomorphogenesis by a small cell-wall-derived dark signal. Current Biology 27: 3403-3418.

Stamm, P., Strauß, S., Montenegro-Johnson, T. D., Smith, R. S., & Bassel, G. W. (2017). In Silico Methods for Cell Annotation, Quantification of Gene Expression, and Cell Geometry at Single-Cell Resolution Using 3DCellAtlas. PLANT HORMONES: METHODS AND PROTOCOLS, 3RD EDITION, 99-123. doi:10.1007/978-1-4939-6469-7_11.

Templer SE, Ammon A, Pscheidt D, Ciobotea O, Schuy C, McCollum C, Sonnewald U, Hanemann A, Förster J, Ordon F, von Korff M, Voll LM. (2017) Metabolite profiling of barley flag leaves in drought and combined heat and drought stress reveals metabolic QTLs for metabolites associated with antioxidant defence. Journal of Experimental Botany 68: 1697-1713,  doi:10.1093/jxb/erx038. open access.

Tomé, F., Jansseune, K., Saey, B., Grundy, J., Vandenbroucke, K., Hannah, M. A., & Redestig, H. (2017). rosettR: protocol and software for seedling area and growth analysis. Plant Methods 13: 13. doi:10.1186/s13007-017-0163-9. open access

Toraeng, P., Vikstrom, L., Wunder, J., Woetzel, S., Coupland, G., & Agren, J. (2017). Evolution of the selfing syndrome: Anther orientation and herkogamy together determine reproductive assurance in a self-compatible plant. Evolution 71: 2206-2218. doi:10.1111/evo.13308. open access

Tsugawa, S., Hervieux, N., Kierzkowski, D., Routier-Kierzkowska, A.-L., Sapala, A., Hamant, O., Smith, R. S., Roeder, A. H. K., Boudaoud, A., & Li, C.-B. (2017). Clones of cells switch from reduction to enhancement of size variability in Arabidopsis sepals. Development 144: 4398-4405. doi:10.1242/dev.153999. open access

van Esse, W., Walla, A., Finke, A., Koornneef, M., Pecinka, A., & von Korff, M. (2017). Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174: 2397-2408. doi:10.1104/pp.17.00108. open access

Vu, G. T. H., Cao, H. X., Reiss, B., & Schubert, I. (2017). Deletion-bias in DNA double-strand break repair differentially contributes to plant genome shrinkage. New Phytologist, 214(4): 1712-1721. doi:10.1111/nph.14490. open access

Vu, G. T. H., Cao, H. X., Fauser, F., Reiss, B., Puchta, H., & Schubert, I. (2017). Endogenous sequence patterns predispose the repair modes of CRISPR/Cas9-induced DNA double-stranded breaks in Arabidopsis thaliana. The Plant Journal 92(1): 57-67. doi:10.1111/tpj.13634. open access

Wanderley, A. M., Vasconcelos, S., Huettel, B., Machado, I. C., & Benko-Iseppon, A. M. (2017). Development of 15 SSR polymorphic markers for the endangered Ameroglossum pernambucense Eb. Fischer, S. Vogel & A. V. Lopes (Scrophulariaceae), and cross-transferability in congeneric taxa. Brazilian Journal of Botany 40(4): 1007-1011. doi:10.1007/s40415-017-0410-3.

Wang, Y., Gupta, R., Song, W., Huh, H.-H., Lee, S. E., Wu, J., Agrawal, G. K., Rakwal, R., Kang, K. Y., Park, S.-R., & Kim, S. T. (2017). Label-free quantitative secretome analysis of Xanthomonas oryzae pv. oryzae highlights the involvement of a novel cysteine protease in its pathogenicity. Journal of Proteomics 169: 202-214. doi:10.1016/j.jprot.2017.02.012.

Wu, J., Wang, Y., Kim, S. G., Jung, K.-H., Gupta, R., Kim, J., Park, Y., Kang, K. Y., & Kim, S. T. (2017). A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa. Physiologia Plantarum 161(2): 273-284. doi:10.1111/ppl.12579.

*Zhou Y, *Romero-Campero FJ, Gómez-Zambrano Á, **Turck F, **Calonje M (2017) H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity. Genome Bioloy 18: 69, doi: 10.1186/s13059-017-1197-z. open access. *shared first **shared correspondence

Zhou Y, Tergemina E, Cui H, Förderer A, Hartwig B, Velikkakam James G, Schneeberger K, Turck F. (2017) Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells in Arabidopsis thaliana. Proc Natl Acad Sci 114(18): 4833-4838 doi: 10.1073/pnas.1620955114. open access.

 
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