Recent Publications
2019
Adachi H, Tsuda K: Convergence of cell-surface and intracellular immune receptor signalling. New Phytologist, 221:1676-1678, doi: 10.1111/nph.15634 (2019). 
open access
Arguello, J. R., Laurent, S., & Clark, A. G. (2019). Demographic History of the Human Commensal Drosophila melanogaster. Genome Biology and Evolution, 11(3), 844-854. doi:10.1093/gbe/evz022. open access
Bailey-Serres, J., Parker, J. E., Ainsworth, E. A., Oldroyd, G. E. D., Schroeder, J.I. (2019) Genetic strategies for improving crop yields. Nature 575, 109–118, doi:10.1038/s41586-019-1679-0.
Berens, M. L., Wolinska, K. W., Spaepen, S., Ziegler, J., Nobori, T., Nair, A., Krüler, K., Winkelmueller, T. M., Wang, Y., Mine, A., Becker, D., Garrido-Oter, R., Schulze-Lefert, P.*, Tsuda, K.* (2019) Balancing trade-offs between biotic and abiotic stress responses through leaf age-dependent variation in stress hormone cross-talk. Proceedings of the National Academy of Sciences of the United States of America 116: 2364-2373, doi:10.1073/pnas.1817233116.
* co-corresponding authors open access
Bhandari, D. D., Lapin, D., Kracher, B., von Born, P., Bautor, J., Niefind, K., & Parker, J. E. (2019). An EDS1 heterodimer signalling surface enforces timely reprogramming of immunity genes in Arabidopsis. Nature Communications 10: 772. doi:10.1038/s41467-019-08783-0. open access
Carella, P., Gogleva, A., Hoey, D. J., Bridgen, A. J., Stolze, S. C., Nakagami, H., & Schornack, S. (2019). Conserved Biochemical Defenses Underpin Host Responses to Oomycete Infection in an Early-Divergent Land Plant Lineage. Current Biology, 29(14), 2282-2294.e5. doi:10.1016/j.cub.2019.05.078.
Chen, Q., Jiang, T., Liu, Y.-X., Liu, H., Zhao, T., Liu, Z., Gan, X., Hallab, A., Wang, X., He, J., Ma, Y., Zhang, F., Jin, T., Schranz, M. E., Wang, Y., Bai, Y., & Wang, G. (2019). Recently duplicated sesterterpene (C25) gene clusters in Arabidopsis thaliana modulate root microbiota. SCIENCE CHINA-LIFE SCIENCES, 62(7), 947-958. doi:10.1007/s11427-019-9521-2.
Chopra, D., Mapar, M., Stephan, L., Albani, MC., Deneer, A., Coupland, G., Willing, EM., Schellmann, S., Schneeberger, K., Fleck, C., Schrader, A., Hülskamp, M. (2019) Genetic and molecular analysis of trichome development in Arabis alpina. PNAS 116, 12078-12083, doi.org/10.1073/pnas.1819440116
Coupland, G. (2019) FLOWERING LOCUS C Isolation and Characterization: Two Articles That Opened Many Doors. The Plant Cell 3, 1190–1191, DOI 10.1105/tpc.19.00325 open access
Dantas, L. G., Alencar, L., Huettel, B., & Pedrosa-Harand, A. (2019). Development of ten microsatellite markers for Alibertia edulis (Rubiaceae), a Brazilian savanna tree species. Molecular Biology Reports, 46(4), 4593-4597. doi:10.1007/s11033-019-04819-2.
Deremetz, A., Le Roux, C., Idir, Y., Brousse, C., Agorio, A., Gy, I., Parker, J. E., & Bouché, N. (2019). Antagonistic actions of FPA and IBM2 regulate transcript processing from genes containing heterochromatin. Plant Physiology, doi:10.1104/pp.18.01106. open access
Diaz, M., Pecinkova, P., Nowicka, A., Baroux, C., Sakamoto, T., Gandha, P. Y., Jerabkova, H., Matsunaga, S., Grossniklaus, U., & Pecinka, A. (2019). The SMC5/6 Complex Subunit NSE4A Is Involved in DNA Damage Repair and Seed Development. Plant and Cell Physiology, 31(7), 1579-1597. doi:10.1105/tpc.18.00043. open access
Dittberner, H., Becker, C., Jiao, W.-B., Schneeberger, K., Hölzel, N., Tellier, A., & de Meaux, J. (2019). Strengths and potential pitfalls of hay transfer for ecological restoration revealed by RAD-seq analysis in floodplain Arabis species. Molecular Ecology, 28(17), 3887-3901. doi:10.1111/mec.15194.
Dongus, J. A., Bhandari, D. D., Patel, M., Archer, L., Dijkgraaf, L., Deslandes, L., Shah, J., & Parker, J. E. (2019). Arabidopsis PAD4 lipase-like domain is sufficient for resistance to green peach aphid. Molecular Plant-Microbe Interactions. doi:10.1094/MPMI-08-19-0245-R.
Eom, J.-B., Luo, D., Atienza-Grande, G., Yang, J., Ji, C., Luu, V. T., Huguet-Tapia, J. C., Char, S. N., Liu, B., Nguyen, H., Schmidt, S. M., Szurek, B., Vera Cruz, C., White, F. F., Oliva, R., Yang, B., & Frommer, W. B. (2019). Diagnostic kit for rice blight resistance. Nature Biotechnology 37(11), 1372-1379. doi:10.1038/s41587-019-0268-y. open access
Fabianska, I., Gerlach, N., Almario, J., & Bucher, M. (2019). Plant-mediated effects of soil phosphorus on the root-associated fungal microbiota in Arabidopsis thaliana. New Phytologist 221, 2123-2137. doi:10.1111/nph.15538.
Finke, A., Mandakova, T., Nawaz, K., Vu, G. T. H., Novak, P., Macas, J., Lysak, M. A., & Pecinka, A. (2019). Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda. The Plant Journal, 99(6), 1066-1079. doi:10.1111/tpj.14380.
Flood, P. (2019). Using natural variation to understand the evolutionary pressures on plant photosynthesis. Current Opinion in Plant Biology 49, 68-73. doi:10.1016/j.pbi.2019.06.001.
Flood, P. (2019). The Smell of Transcription: The SIMYC1 Transcription Factor Makes Tomato Plants Smelly. The Plant Cell 31(1), 2-2. doi:10.1105/tpc.19.00044.
Fragkostefanakis, S., Simm, S., El-Shershaby, A., Hu, Y., Bublak, D., Mesihovic, A., Darm, K., Mishra, S. K., Tschiersch, B., & Theres, K. (2019). The repressor and co‐activator HsfB1 regulates the major heat stress transcription factors in tomato. Plant, Cell and Environment 42: 874-890, doi:10.1111/pce.13434.
Hajheidari, M., Wang, Y., Bhatia, N., Vuolo, F., Franco-Zorrilla, J. M., Karady, M., Mentink, R. A., Wu, A., Rilwan Oluwatobi, B. R., Müller, B., Dello Ioio, R., Laurent, S., Ljung, K., Huijser, P., Gan, X., & Tsiantis, M. (2019). Autoregulation of RCO by low-affinity binding modulates cytokinin action and shapes leaf diversity. Current Biology, doi:10.1016/j.cub.2019.10.040. open access
Hajheidari, M., Koncz, C., & Bucher, M. (2019). Chromatin Evolution-Key Innovations Underpinning Morphological Complexity. Frontiers in Plant Science 10: 454. doi:10.3389/fpls.2019.00454. open access
Hayama, R., Yang, P., Valverde, F., Mizoguchi, T., Furtani-Hayama, I., Vierstra RD., Coupland, G. (2019) Ubiquitin carboxyl-terminal hydrolases are required for period maintenance of the circadian clock at high temperature in Arabidopsis. Sci Rep 9, 17030 (2019), doi:10.1038/s41598-019-53229-8. open access
Hu, Z., Ghosh, A., Stolze, S. C., Horváth, M., Bai, B., Schaefer, S., Zündorf, S., Liu, S., Harzen, A., Hajheidari, M., Sarnowski, T. J., Nakagami, H., Koncz, Z., & Koncz, C. (2019). Gene modification by fast-track recombineering for cellular localization and isolation of components of plant protein complexes. The Plant Journal. doi:10.1111/tpj.14450 open access
Hughes, P. W., Soppe, W. J. J., & Albani, M. (2019). Seed traits are pleiotropically regulated by the flowering time gene PERPETUAL FLOWERING 1 (PEP1) in the perennial Arabis alpina. Molecular Ecology 28, 1183-1201. doi:10.1111/mec.15034. open acces
Hyun, Y., Vincent, C., Tilmes, V., Bergonzi, S., Kiefer, C., Richter, R., Martinez-Gallegos, R., Severing, E., Coupland, G. (2019) A regulatory circuit conferring varied flowering response to cold in annual and perennial plants. Science 363, 6425, 409-412, doi: 10.1126/science.aau8197.
Ishikawa, S., Barrero, J., Takahashi, F., Nakagami, H., Peck, S., Gubler, F., Shinozaki, K., & Umezawa, T. (2019). Comparative phosphoproteomic analysis reveals a decay of ABA signaling in barley embryos during after-ripening. Plant and Cell Physiology. doi:10.1093/pcp/pcz163.
Jackson, M. D. B., Duran-Nebreda, S., Kierzkowski, D., Strauss, S., Xu, H., Landrein, B., Hamant, O., Smith, R. S., Johnston, I. G., & Bassel, G. W. (2019). Global Topological Order Emerges through Local Mechanical Control of Cell Divisions in the Arabidopsis Shoot Apical Meristem. Cell Systems 8, 53-65.e3, doi:10.1016/j.cels.2018.12.009. open access
Kiefer, C., Willing, E.-M., Jiao, W.-B., Sun, H.-Q., Piednoel, M., Huemann, U., Hartwig, B., Huemann, U., Koch, M. A., & Schneeberger, K. (2019). Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylation. Nature Plants, 5(8), 846-855. doi:10.1038/s41477-019-0486-9.
Kierzkowski, D., Runions, A., Vuolo, F., Strauss, S., Lymbouridou, R., Routier-Kierzkowska, A.-L., Wilson-Sánchez, D., Jenke, H., Galinha, C., Mosca, G., Zhang, Z., Canales, C., Dello Ioio, R., Huijser, P., Smith, R. S., Tsiantis, M., (2019) A Growth-Based Framework for Leaf Shape Development and Diversity. Cell, doi: 10.1016/j.cell.2019.05.011. open access
Lapin. D, Kovacova, V., Sun, X., Dongus, J. A., Bhandari, D., von Born, P., Bautor, J., Guarneri, N., Rzemieniewski, J., Stuttmann, J., Beyer, A., Parker, J. E. (2019) A Coevolved EDS1-SAG101-NRG1 Module Mediates Cell Death Signaling by TIR-Domain Immune Receptors, Plant Cell 31: 2430-2455, doi: 10.1105/tpc.19.00118. open access
Lazaro, A., Zhou, Y., Giesguth, M., Nawaz, K., Bergonzi, S., Pecinka, A., Coupland, G., & Albani, M. (2018). PERPETUAL FLOWERING2 coordinates the vernalization response and perennial flowering in Arabis alpina. Journal of Experimental Botany 70: 949-961, doi: 10.1093/jxb/ery423. open access
Maekawa, T.*§ , Kracher, B.*, Saur, I. M. L., Yoshikawa-Maekawa, M., Kellner, R., Pankin, A., von Korff, M., Schulze-Lefert, P. (2019) Subfamily-specific specialization of RGH1/MLA immune receptors in wild barley. Molecular Plant-Microbe Interactions 32, 107-119, doi: 10.1094/MPMI-07-18-0186-FI.
* joint first authors, §corresponding author. open access
Meng, Q., Gupta, R., Min, C. W., Kim, J., Kramer, K., Wang, Y., Park, S.-R., Finkemeier, I., & Kim, S. T. (2019). A proteomic insight into the MSP1 and flg22 induced signaling in Oryza sativa leaves. Journal of Proteomics 196, 120-130. doi:10.1016/j.jprot.2018.04.015.
Nikolov, L. A.; Shushkov, P.; Nevado, B; Gan, X.; Al-Shehbaz, I. A.; Filatov, D.; Bailey, C. D.; Tsiantis, M (2019) Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity. New Phytologist 222, 1638-1651, doi: 10.1111/nph.15732. open access
Nobori, T., & Tsuda, K. (2019). The plant immune system in heterogeneous environments. Current Opinion in Plant Biology 50, 58-66, doi:10.1016/j.pbi.2019.02.003.
Nobori, T., Wang, Y., Wu, J., Stolze, S. C., Tsuda, Y., Finkemeier, I., Nakagami, H., & Tsuda, K. (2019). In planta bacterial multi-omics analysis illuminates regulatory principles underlying plant-pathogen interactions. bioRxiv, doi:10.1101/822932. open access
Oliva, R., Atienza-Grande, G., Huguet-Tapia, J. C., Perez-Quintero, A., Li, T., Eom, J.-B., Li, C., Nguyen, H., Liu, B., Auguy, F., Sciallano, C., Luu, V. T., Dossa, G. S., Cunnac, S., Schmidt, S. M., Slamet-Loedin, I. H., Vera Cruz, C., Szurek, B., & Frommer, W. B. (2019). Broad-spectrum resistance to bacterial blight in rice using genome editing. Nature Biotechnology, 37(11), 1344-1350. doi:10.1038/s41587-019-0267-z. open access
Parker, J. (2019). Early Leads to Mechanisms of Plant Cultivar-Specific Disease Resistance. Plant Cell, 31(7), 1410-1411. doi:10.1105/tpc.19.00340. open access
Philippou, K., Ronald, J., Sánchez Villarreal, A., Davis, A. M., & Davis, S. J. (2019). Physiological and Genetic Dissection of Sucrose Inputs to the Arabidopsis thaliana Circadian System. Genes, 10(5): 334. doi:10.3390/genes10050334. open access
Richter, R., Kinoshita, A., Vincent, C., Martinez-Gallegos, R., Gao, H., van Driel, AD., Hyun, Y., Mateos, JL., Coupland, G. (2019). Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications. PLoS genetics 15 (4), e1008065, doi.org/10.1371/journal.pgen.1008065. open access
Rossmann, S., Richter, R., Sun, H., Schneeberger, K., Töpfer, R., Zyprian, E., Theres, K. (2019) Mutations in the miR396 binding site of the growth-regulating factor gene VvGRF4 modulate inflorescence architecture in grapevine. Plant Journal, doi: 10.1111/tpj.14588. open access
Sano, N., Takebayashi, Y., To, A., Mhiri, C., Rajjou, L., Nakagami, H., & Kanekatsu, M. (2019). Shotgun proteomic analysis highlights roles of long-lived mRNAs and de novo transcribed mRNAs upon imbibition in rice embryos. Plant and Cell Physiology. doi:10.1093/pcp/pcz152.
Sapala, A., Runions, A., & Smith, R. S. (2019). Mechanics, geometry and genetics of epidermal cell shape regulation: different pieces of the same puzzle. Current Opinion in Plant Biology 47, 1-8, doi:10.1016/j.pbi.2018.07.017. open access
Saur, I. M. L., Bauer, S., Kracher, B., Lu, X, Frantzeskakis; L., Müller, M. C., Sabelleck, B., Kümmel, F., Panstruga, R., Maekawa, T., Schulze-Lefert, P. (2019) Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism. eLife 8:e44471, doi: 10.7554/eLife.44471. open access
Stephan, L., Tilmes, V., & Huelskamp, M. (2019). Selection and validation of reference genes for quantitative Real-Time PCR in Arabis alpina. PLOS ONE 14: e0211172. doi:10.1371/journal.pone.0211172. open access
Takou, M., Wieters, B., Kopriva, S., Coupland, G., Linstädter, A., De Meaux, J. (2019) Linking genes with ecological strategies in Arabidopsis thaliana. Journal of Experimental Botany 70 (4), 1141-1151, doi: 10.1093/jxb/ery447. open access
Thiergart, T.§, Zgadzaj, R.§, Bozsóki, Z., Garrido-Oter, R., Radutoiu, S.*, and Schulze-Lefert, P.* (2019) Lotus japonicus symbiosis genes impact microbial interactions between symbionts and multikingdom commensal communities. mBio 10:e01833-19, doi: 10.1128/mBio.01833-19. § joint first authors, * co-corresponding authors open access
Tilmes, V., Mateos, J. L., Madrid, E., Vincent, C., Severing, E., Carrera, E., López-Díaz, I., Coupland G. (2019). Gibberellins Act Downstream of Arabis PERPETUAL FLOWERING1 to Accelerate Floral Induction during Vernalization. Plant Physiology 180, 1549-1563, doi.org/10.1104/pp.19.00021. open access
Uemura T*§, Nakano RT*, Takagi J, Wang Y, Kramer K, Finkemeier I, Nakagami H, Tsuda K, Ueda T, Schulze-Lefert P§, Nakano A: A Golgi-released subpopulation of the trans-Golgi network mediates constitutive and pathogen-inducible protein secretion in Arabidopsis. Plant Physiology 179: 519-532, doi: 10.1104/pp.18.01228, (2019). open access
* joint first authors, §corresponding authors.
Vannier, N., Agler, M., & Hacquard, S. (2019). Microbiota-mediated disease resistance in plants. PLoS Pathogens, 15(6): e1007740. doi:10.1371/journal.ppat.1007740. open access
Vayssières, A., Mishra, P., Roggen, A., Ponraj, U., Neumann, U., Theres, K., Liung, K., & Albani, M. (2019). Flowering behaviour in Arabis alpina ensures the maintenance of a perennating dormant bud bank. bioRxiv, 562868. doi: https://doi.org/10.1101/562868. open access
Vinegra de la Torre, N., Kaschani, F., Kaiser, M., van der Hoorn, R. A. L., Soppe, W., & Misas-Villamil, J. (2019). Dynamic hydrolase labelling as a marker for seed quality in Arabidopsis seeds. Biochemical Journal 476, 843-857, doi:10.1042/BCJ20180911. open access
Voges, M.J.E.E.E., Bai, Y., Schulze-Lefert, P., Sattely, E. S. (2019) Plant derived coumarins shape the composition of an Arabidopsis synthetic root microbiome. PNAS , doi
Voss, M., Toelzer, C., Bhandari, D. D., Parker, J. E., Niefind, K. (2019) Arabidopsis immunity regulator EDS1 in a PAD4/SAG101-unbound form is a monomer with an inherently inactive conformation. Journal of Structural Biology 208:107390, doi: 10.1016/j.jsb.2019.09.007.
Wang Y, Garrido-Oter R, Wu J, Winkelmuller TM, Agler M, Colby T, Nobori T, Kemen E, Tsuda K: Site-specific cleavage of bacterial MucD by secreted proteases mediates antibacterial resistance in Arabidopsis. Nature Communications, 10: 2853 (2019). open access
Wolinska, K. W., & Berens, M. L. (2019). Optimal Defense Theory 2.0: tissue-specific stress defense prioritization as an extra layer of complexity. Communicative & Integrative Biology 12(1), 91-95. doi:10.1080/19420889.2019.1625661. open access
Xiao, Y., Stegmann, M., Han, Z., DeFalco, T. A., Parys, K., Xu, L., Belkhadir, Y., Zipfel, C., & Chai, J. (2019). Mechanisms of RALF peptide perception by a heterotypic receptor complex. Nature, 572(7768), 270-274. doi:10.1038/s41586-019-1409-7.
Yang, C., Hamamura, Y., Sofroni, K., Böwer, F., Stolze, S. C., Nakagami, H., Nakagami, H., & Schnittger, A. (2019). SWITCH 1/DYAD is a WINGS APART-LIKE antagonist that maintains sister chromatid cohesion in meiosis. Nature Communications, 10: 1755. doi:10.1038/s41467-019-09759-w. open access
Yoshida, S.*, Van der Schuren, A., van Dop, M., van Galen, L., Saiga, S., Adibi, M., Moller, B., ten Hove, C. A., Marhavy, P., Smith, R. S., Friml, J., & Weijers, D.* (2019). A SOSEKI-based coordinate system interprets global polarity cues in Arabidopsis. Nature Plants 5: 160-166, doi:10.1038/s41477-019-0363-6. * co-corresponding authors open access
Zhang, J., Liu, Y.-X., Zhang, N., Hu, B., Jin, T., Xu, H., Qin, Y., Yan, P., Zhang, X., Guo, X., Hui, J., Cao, S., Wang, X., Wang, C., Wang, H., Qu, B., Fan, G., Yuan, L., Garrido-Oter, R., Chu, C., & Bai, Y. (2019). NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice. Nature Biotechnology, 37(6), 676-684. doi:10.1038/s41587-019-0104-4.
Zicola, J., Liu, L., Tänzler, P., Turck, F. (2019) Targeted DNA methylation represses two enhancers of FLOWERING LOCUS T in Arabidopsis thaliana. Nature Plants 5: 300-307, doi: 10.1038/s41477-019-0375-2. open access
