Recent Publications
2018
Atanasov, K. E., Liu, C., Erban, A., Kopka, J., Parker, J. E., Alcázar, R. 2018. NLR mutations suppressing immune hybrid incompatibility and their effects on disease resistance. Plant Physiology 177:1152-1169, doi: 10.1104/pp.18.00462. 
open access
Birkenbihl, R.P., Kracher, B., Ross, A., Kramer, K., Finkemeier, I., and Somssich I. E. (2018). Principles and characteristics of the Arabidopsis WRKY regulatory network during early MAMP-triggered immunity. Plant Journal 96, 487-502. open access
Castro, PH., Bachmair, A., Bejarano, ER., Coupland, G., Lois, LM. , Sadanandom, A., van den Burg, HA., Vierstra, RD., Azevedo, H. (2018) , Revised nomenclature and functional overview of the ULP gene family of plant deSUMOylating proteases. Journal of Experimental Botany, Vol. 69, No. 19 pp. 4505–4509, doi:10.1093/jxb/ery301. open access
Cui, H., Qiu, J., Zhou, Y., Bhandari, D. D., Zhao, C., Bautor, J., Parker, J. E. 2018. Antagonism of transcription factor MYC2 by EDS1/PAD4 complexes bolsters salicylic acid defense in Arabidopsis effector-triggered immunity. Molecular Plant 11, 1053-1066, doi: 10.1016/j.molp.2018.05.007. open access
Durán, P., Thiergart, T., Garrido-Oter, R., Agler, M., Kemen, E., Schulze-Lefert, P.*, Hacquard, S.* (2018) Microbial interkingdom interactions in roots promote Arabidopsis survival. Cell 175, 973-983, doi: 10.1016/j.cell.2018.10.020. *co-corresponding authors open access
Failmezger H*, Lempe J*, Khadem N, Cartolano M, Tsiantis M, Tresch A. (2018) MowJoe: a method for automated-high throughput dissected leaf phenotyping. Plant Methods 14:27, doi: 10.1186/s13007-018-0290. open access *contributed equally
Fichman Y, Koncz Z, Reznik N, Miller G, Szabados L, Kramer K, Nakagami H, Fromm H, Koncz C, Zilberstein A. (2018) SELENOPROTEIN O is a chloroplast protein involved in ROS scavenging and its absence increases dehydration tolerance in Arabidopsis thaliana. Plant Science 270:278-291. doi: 10.1016/j.plantsci.2018.02.023.
Frantzeskakis, L.§; Kracher, B.§; Kusch, S.; Yoshikawa-Maekawa, M.; Bauer, S.; Pedersen, C.; Spanu, P.; Maekawa, T.*; Schulze-Lefert, P.*; Panstruga, R.* (2018) Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen. BMC Genomics 19, 381 (2018), doi: . §joint first authors; *co-corresponding authors. open access
Fulgione, A., Koornneef, M., Roux, F., Hermisson, J., Hancock, A. M. (2018) Madeiran Arabidopsis thaliana Reveals Ancient Long-Range Colonization and Clarifies Demography in Eurasia, Molecular Biology and Evolution 35, 564–574, doi: 10.1093/molbev/msx300. open access
Garrido-Oter, R., Nakano, R. T., Dombrowski, N., Ma, K.-W., The AgBiome Team, McHardy, A. C. and P. Schulze-Lefert: Modular traits of the Rhizobiales root microbiota and their evolutionary relationship with symbiotic rhizobia. Cell Host & Microbe 24, 155–167 (2018). open access
Hayama R, Mizoguchi T, Coupland G (2018) Differential effects of light-to-dark transitions on phase setting in circadian expression among clock-controlled genes in Pharbitis nil. Plant Signal Behav. 2018;13(6):e1473686. doi: 10.1080/15592324.2018.1473686. open access
Ibañez C, Delker C, Martinez C, Bürstenbinder K, Janitza P, Lippmann R, Ludwig W, Sun H, James GV, Klecker M, Grossjohann A, Schneeberger K, Prat S, Quint M. (2018) Brassinosteroids Dominate Hormonal Regulation of Plant Thermomorphogenesis via BZR1. Current Biology 22;28(2):303-310.e3. doi: 10.1016/j.cub.2017.11.077.
Jacob, F., Kracher, B., Mine, A., Seyfferth, C., Blanvillain-Baufumé, S., Parker, J.E., Tsuda, K., Schulze-Lefert, P., Maekawa, T. (2018) A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytologist 217, 1667-1680, doi: 10.1111/nph.14943. open access
Joglekar, S., Suliman, M., Bartsch, M., Halder, V., Maintz, J., Bautor, J., Zeier, J., Parker, J. E.* and E. Kombrink* Chemical activation of EDS1/PAD4 signaling leading to pathogen resistance in Arabidopsis. Plant & Cell Physiology 59, 1592-1607. doi: 10.1093/pcp/pcy106. open access
Kirschner GK, Stahl Y, Imani J, von Korff M, Simon R (2018) Fluorescent reporter lines for auxin and cytokinin signalling in barley (Hordeum vulgare). PLoS One 13(4):e0196086. open acces
Kollmann M., Turck F. (2018) Molekulare Mechanismen der Datenintegration und Entscheidung zur Einleitung der Reproduktiven Phase in Pflanzen. In: Bossert M. (eds) Information- and Communication Theory in Molecular Biology. Lecture Notes in Bioengineering. Springer, Cham
Koskela, M.M., Brünje, A., Ivanauskaite, A., Grabsztunowicz, M., Lassowskat, I., Neumann, U., Dinh, T.V., Sindlinger, J., Schwarzer, D., Wirtz, M., Tyystjarvi, E., Finkemeier, I., and Mulo, P. (2018) Chloroplast acetyltransferase NSI is required for state transitions in Arabidopsis thaliana. The Plant Cell, doi: tpc.00155.2018. open access
Krause, K and Turck, F. Plant H3K27me3 has finally found its readers. Nature Genetics (2018), doi 10.1038/s41588-018-0201-1. https://rdcu.be/5qXk
Laenen, B., Tedder, A., Nowak, MD., Toraeng, P., Wunder, J., Wötzel, S., Steige, KA., Kourmpetis, Y., Odong, T., Drouzas, AD, Bink, M. Agren, J, Coupland, G. & Slotte, T. (2018) Demography and mating system shape the genomewide impact of purifying selection in Arabis alpina. Proceedings of the National Academy of Sciences of the United States of America 115(4), 816-821, doi/10.1073/pnas.1707492115. open access
Lazaro A., Obeng-Hinneh E., Albani M. C. (2018) Extended vernalization regulates inflorescence fate in Arabis alpina by stably silencing PERPETUAL FLOWERING 1. Plant Physiology 176, 1-15.
Lazaro, A. , Zhou, Y., Giesguth, M., Nawaz, K., Bergonzi, S., Pecinka, A., Coupland, G., Albani, MC. (2018) PERPETUAL FLOWERING2 coordinates the vernalization response and perennial flowering in Arabis alpina. Journal of Experimental Botany, ery423, https://doi.org/10.1093/jxb/ery423
Maekawa, T.*§ , Kracher, B.*, Saur, I. M. L., Yoshikawa-Maekawa, M., Kellner, R., Pankin, A., von Korff, M., Schulze-Lefert, P. (2018) Subfamily-specific specialization of RGH1/MLA immune receptors in wild barley. Molecular Plant-Microbe Interactions, doi: 10.1094/MPMI-07-18-0186-FI. * joint first authors, §corresponding author. open access
Mine A, Seyfferth C, Kracher B, Berens ML, Becker D, Tsuda K: The Defense Phytohormone Signaling Network Enables Rapid, High-amplitude Transcriptional Reprogramming During Effector-Triggered Immunity. Plant Cell 30: 1199-1219 (2018). open access
Monniaux, M., Pieper, B., McKim, S. M., Routier-Kierzkowska, A.-L., Kierzkowski, D., Smith, R. S., & Hay, A. (2018). The role of APETALA1 in petal number robustness. eLife, 7: e39399. doi:10.7554/eLife.39399. open access
Mulki MA, Bi X, von Korff M.(2018) FLOWERING LOCUS T3 controls spikelet initiation but not floral development.Plant Physiol, doi: 10.1104/pp.18.00236. open access
Müller NA, Zhang L, Koornneef M, Jiménez-Gómez JM. (2018) Mutations in EID1 and LNK2 caused light-conditional clock deceleration during tomato domestication. Proc Natl Acad Sci 115(27):7135-7140. doi: 10.1073/pnas.1801862115.
Nobori T, Tsuda K: In planta Transcriptome Analysis of Pseudomonas syringae. Bio-protocol, 8: 2987 (2018)
Nobori T, Mine A, Tsuda K: Molecular networks in plant-pathogen holobiont. FEBS Letters 592: 1937-1953 (2018) open access
Nobori, T., Velásquez, A. C., Wu, J., Kvitko, B. H., Kremer, J. M., Wang, Y., He, S. Y., & Tsuda, K. (2018) Transcriptome landscape of a bacterial pathogen under plant immunity. Proceedings of the National Academy of Sciences of the United States of America 115: E3055-E3064 (2018), doi:10.1073/pnas.1800529115.
Ó'Maoiléidigh, DS., Stewart, D., Zheng, B., Coupland, G., Wellmer, F. (2018) Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development 145, doi:10.1242/dev.157784.
Oide M, Okajima K, Nakagami H, Kato T, Sekiguchi Y, Oroguchi T, Hikima T, Yamamoto M, Nakasako M. (2018) Blue light-excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from Arabidopsis. J Biol Chem. 293(3):963-972. doi: 10.1074/jbc.RA117.000324.
Pankin A, Altmüller J, Becker C, von Korff M (2018) Targeted resequencing reveals genomic signatures of barley domestication. New Phytologist, doi: 10.1111/nph.15077. open access
Piślewska‐Bednarek, M., Nakano, R.T., Hiruma, K., Pastorczyk, M., Sanchez‐Vallet, A., Singkaravanit‐Ogawa, S., Ciesiołka, D., Takano, Y., Molina, A., Schulze‐Lefert, P., Bednarek, P. (2018) Glutathione transferase U13 functions in pathogen‐triggered glucosinolate metabolism in Arabidopsis. Plant Physiology 176, 538–551, doi: 10.1104/pp.17.01455. open access
Rasmann S, Sánchez Vilas J, Glauser G, Cartolano M, Lempe J, Tsiantis M, Pannell JR, Heil M. (2018) Pleiotropic effect of the Flowering Locus C on plant resistance and defence against insect herbivores. Journal of Ecology 106:1244–1255, doi: 10.1111/1365-2745.12894. open access
Robbins, C., Thiergart, T., Hacquard, S., Garrido-Oter, R., Gans, W., Peiter, E., Schulze-Lefert, P.*, Spaepen, S.* (2018) Root-associated bacterial and fungal community profiles of Arabidopsis thaliana are robust across contrasting soil P levels. Phytobiomes 2, 24-34, doi: 10.1094/PBIOMES-09-17-0042-R. *co-corresponding authors open access
Robin, G. P., Kleemann, J., Neumann, U., Cabre, L., Dallery, J.-F., Lapalu, N., O’Connell, R.J. (2018) Subcellular Localization Screening of Colletotrichum higginsianum Effector Candidates Identifies Fungal Proteins Targeted to Plant Peroxisomes, Golgi Bodies, and Microtubules, Frontiers in Plant Science 9, 562. doi: 10.3389/fpls.2018.00562. open access
Rossini L, Muehlbauer GJ, Okagaki R, Salvi S, von Korff M. (2018) Genetics of Whole Plant Morphology and Architecture. The Barley Genome pp 209-231
Sapala, A., Runions, A., Routier-Kierzkowska, A.-L., Das Gupta, M., Hong, L., Hofhuis, H., Verger, S., Mosca, G., Li, C.-B., Hay, A., Hamant, O., Roeder, A., Tsiantis, M., Prusinkiewicz, R., & Smith, R. S. (2018). Why plants make puzzle cells, and how their shape emerges. eLife, 7: e32794, doi:10.7554/eLife.32794. open access
Sopeña-Torres, S., Jorda, L., Sanchez-Rodriguez, C., Miedes, E., Escudero, V., Swamy, S., Lopez, G., Pislewska-Bednarek, M., Lassowskat, I., Lee, J., Gu, Y., Haigis, S., Alexander, D., Pattathil, S., Muñoz-Barrios, A., Bednarek, P., Somerville, S., Schulze-Lefert, P., Hahn, M., Scheel, D., & Molina, A. (2018) YODA MAP3K kinase regulates plant immune responses conferring broad-spectrum disease resistance. New Phytologist, 218, 661-680, doi:10.1111/nph.15007.
Sun H, Ding J, Piednoël M, Schneeberger K. (2018) findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies. Bioinformatics 34(4):550-557, doi: 10.1093/bioinformatics/btx637. open access
Tsuda, K (2018) Division of Tasks: Defense by the Spatial Separation of Antagonistic Hormone Activities. Plant and Cell Physiology 59: 3-4.
Vuolo, F., Kierzkowski, D., Runions, A., Hajheidari, M., Mentink, R. A., Das Gupta, M., Zhang, Z., Vlad, D., Wang, Y., Pecinka, A., Gan, X., Hay, A., Huijser, P., & Tsiantis, M. (2018). LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes and Development. doi:10.1101/gad.318212.118. open access
Wang, Y., Schuck, S., Wu, J., Yang, P., Doering, A.-C., Zeier, J., Tsuda: K. (2018) A MPK3/6-WRKY33-ALD1-Pipecolic acid Regulatory Loop Contributes to Systemic Acquired Resistance. Plant Cell; doi: 10.1105/tpc.18.00547. open access
Wozny D, Kramer K, Finkemeier I, Acosta IF, Koornneef M. (2018) Genes for seed longevity in barley identified by genomic analysis on near isogenic lines. Plant Cell Environ 41:1895-1911, doi: 10.1111/pce.13330.
Zhou, Y., Wang, Y., Krause, K., Yang, T., Dongus, J. A., Zhang, Y., Turck, F. (2018) Telobox motifs recruit CLF/SWN–PRC2 for H3K27me3 deposition via TRB factors in Arabidopsis. Nature Genetics, doi: 10.1038/s41588-018-0109-9. 
open access
Yokoo S, Inoue S, Suzuki N, Amakawa N, Matsui H, Nakagami H, Takahashi A, Arai R, Katou S. (2018) Comparative analysis of plant isochorismate synthases reveals structural mechanisms underlying their distinct biochemical properties. Biosci Rep. 38(2). pii: BSR20171457. doi: 10.1042/BSR20171457. open access
Zhou, Y., Wang, Y., Krause, K., Yang, T., Dongus, J. A., Zhang, Y., Turck, F. (2018) Telobox motifs recruit CLF/SWN–PRC2 for H3K27me3 deposition via TRB factors in Arabidopsis. Nature Genetics, doi: 10.1038/s41588-018-0109-9. open access
