Max-Planck-Society Repository

MPG.PuRe

This is the publication repository of the Max Planck Society.
It contains bibliographic data and numerous fulltexts of the publications of its researchers.

Recent Publications

Recent Publications

2019

Adachi H, Tsuda K: Convergence of cell-surface and intracellular immune receptor signalling. New Phytologist, 221:1676-1678, doi: 10.1111/nph.15634 (2019). open acces

Berens, M. L., Wolinska, K. W., Spaepen, S., Ziegler, J., Nobori, T., Nair, A., Krüler, K., Winkelmueller, T. M., Wang, Y., Mine, A., Becker, D., Garrido-Oter, R., Schulze-Lefert, P.*, Tsuda, K.* (2019) Balancing trade-offs between biotic and abiotic stress responses through leaf age-dependent variation in stress hormone cross-talk. Proceedings of the National Academy of Sciences of the United States of America 116: 2364-2373, doi:10.1073/pnas.1817233116.
* co-corresponding authors  open access

Bhandari, D. D., Lapin, D., Kracher, B., von Born, P., Bautor, J., Niefind, K., & Parker, J. E. (2019). An EDS1 heterodimer signalling surface enforces timely reprogramming of immunity genes in Arabidopsis. Nature Communications 10: 772. doi:10.1038/s41467-019-08783-0. open access

Deremetz, A., Le Roux, C., Idir, Y., Brousse, C., Agorio, A., Gy, I., Parker, J. E., & Bouché, N. (2019). Antagonistic actions of FPA and IBM2 regulate transcript processing from genes containing heterochromatin. Plant Physiology, doi:10.1104/pp.18.01106. open access

Flood, P. (2019). The Smell of Transcription: The SIMYC1 Transcription Factor Makes Tomato Plants Smelly. The Plant Cell 31(1), 2-2. doi:10.1105/tpc.19.00044.

Fragkostefanakis, S., Simm, S., El-Shershaby, A., Hu, Y., Bublak, D., Mesihovic, A., Darm, K., Mishra, S. K., Tschiersch, B., & Theres, K. (2019). The repressor and co‐activator HsfB1 regulates the major heat stress transcription factors in tomato. Plant, Cell and Environment 42: 874-890, doi:10.1111/pce.13434.

Hughes, P. W., Soppe, W. J. J., & Albani, M. (2019). Seed traits are pleiotropically regulated by the flowering time gene PERPETUAL FLOWERING 1 (PEP1) in the perennial Arabis alpina. Molecular Ecology 28, 1183-1201. doi:10.1111/mec.15034. open acces

Hyun, Y., Vincent, C., Tilmes, V., Bergonzi, S., Kiefer, C., Richter, R., Martinez-Gallegos, R., Severing, E., Coupland, G. (2019) A regulatory circuit conferring varied flowering response to cold in annual and perennial plants. Science 363, 6425, 409-412, doi: 10.1126/science.aau8197.

Jackson, M. D. B., Duran-Nebreda, S., Kierzkowski, D., Strauss, S., Xu, H., Landrein, B., Hamant, O., Smith, R. S., Johnston, I. G., & Bassel, G. W. (2019). Global Topological Order Emerges through Local Mechanical Control of Cell Divisions in the Arabidopsis Shoot Apical Meristem. Cell Systems 8, 53-65.e3, doi:10.1016/j.cels.2018.12.009. open acces

Kierzkowski, D., Runions, A., Vuolo, F., Strauss, S., Lymbouridou, R., Routier-Kierzkowska, A.-L., Wilson-Sánchez, D., Jenke, H., Galinha, C., Mosca, G., Zhang, Z., Canales, C., Dello Ioio, R., Huijser, P., Smith, R. S., Tsiantis, M., (2019) A Growth-Based Framework for Leaf Shape Development and Diversity. Cell, doi: 10.1016/j.cell.2019.05.011. open acces

Lazaro, A., Zhou, Y., Giesguth, M., Nawaz, K., Bergonzi, S., Pecinka, A., Coupland, G., & Albani, M. (2018). PERPETUAL FLOWERING2 coordinates the vernalization response and perennial flowering in Arabis alpina. Journal of Experimental Botany 70: 949-961, doi: 10.1093/jxb/ery423. open access

Maekawa, T.*§ , Kracher, B.*, Saur, I. M. L., Yoshikawa-Maekawa, M., Kellner, R., Pankin, A., von Korff, M., Schulze-Lefert, P. (2019) Subfamily-specific specialization of RGH1/MLA immune receptors in wild barley. Molecular Plant-Microbe Interactions 32, 107-119, doi: 10.1094/MPMI-07-18-0186-FI.
* joint first authors, §corresponding author. open acces

Meng, Q., Gupta, R., Min, C. W., Kim, J., Kramer, K., Wang, Y., Park, S.-R., Finkemeier, I., & Kim, S. T. (2019). A proteomic insight into the MSP1 and flg22 induced signaling in Oryza sativa leaves. Journal of Proteomics 196, 120-130. doi:10.1016/j.jprot.2018.04.015.

Nikolov, L. A.; Shushkov, P.; Nevado, B; Gan, X.; Al-Shehbaz, I. A.; Filatov, D.; Bailey, C. D.; Tsiantis, M (2019) Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity. New Phytologist 222, 1638-1651, doi: 10.1111/nph.15732. open acces

Nobori, T., & Tsuda, K. (2019). The plant immune system in heterogeneous environments. Current Opinion in Plant Biology 50, 58-66, doi:10.1016/j.pbi.2019.02.003.

Richter, R., Kinoshita, A., Vincent, C., Martinez-Gallegos, R., Gao, H., van Driel, AD., Hyun, Y., Mateos, JL., Coupland, G. (2019). Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications. PLoS genetics 15 (4), e1008065, doi.org/10.1371/journal.pgen.1008065. open access

Sapala, A., Runions, A., & Smith, R. S. (2019). Mechanics, geometry and genetics of epidermal cell shape regulation: different pieces of the same puzzle. Current Opinion in Plant Biology 47, 1-8, doi:10.1016/j.pbi.2018.07.017. open acces

Saur, I. M. L., Bauer, S., Kracher, B., Lu, X, Frantzeskakis; L., Müller, M. C., Sabelleck, B., Kümmel, F., Panstruga, R., Maekawa, T., Schulze-Lefert, P. (2019) Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism. eLife 8:e44471, doi: 10.7554/eLife.44471. open acces

Stephan, L., Tilmes, V., & Huelskamp, M. (2019). Selection and validation of reference genes for quantitative Real-Time PCR in Arabis alpina. PLOS ONE 14: e0211172. doi:10.1371/journal.pone.0211172. open acces

Takou, M., Wieters, B.,  Kopriva, S., Coupland, G., Linstädter, A., De Meaux, J. (2019) Linking genes with ecological strategies in Arabidopsis thaliana. Journal of Experimental Botany 70 (4), 1141-1151, doi: 10.1093/jxb/ery447. open access

Uemura T*§, Nakano RT*, Takagi J, Wang Y, Kramer K, Finkemeier I, Nakagami H, Tsuda K, Ueda T, Schulze-Lefert P§, Nakano A: A Golgi-released subpopulation of the trans-Golgi network mediates constitutive and pathogen-inducible protein secretion in Arabidopsis. Plant Physiology 179: 519-532, doi: 10.1104/pp.18.01228, (2019). open access
* joint first authors, §corresponding authors.

Vinegra de la Torre, N., Kaschani, F., Kaiser, M., van der Hoorn, R. A. L., Soppe, W., & Misas-Villamil, J. (2019). Dynamic hydrolase labelling as a marker for seed quality in Arabidopsis seeds. Biochemical Journal 476, 843-857, doi:10.1042/BCJ20180911. open access

Yoshida, S.*, Van der Schuren, A., van Dop, M., van Galen, L., Saiga, S., Adibi, M., Moller, B., ten Hove, C. A., Marhavy, P., Smith, R. S., Friml, J., & Weijers, D.* (2019). A SOSEKI-based coordinate system interprets global polarity cues in Arabidopsis. Nature Plants 5: 160-166, doi:10.1038/s41477-019-0363-6. * co-corresponding authors  open access

Zicola, J., Liu, L., Tänzler, P., Turck, F. (2019) Targeted DNA methylation represses two enhancers of FLOWERING LOCUS T in Arabidopsis thaliana. Nature Plants 5: 300-307, doi: 10.1038/s41477-019-0375-2. open access

2018

Amorim, M. d. F., Willing, E.-M., Szabo, E. X., Francisco-Mangilet, A. G., Droste-Borel, I., Macek, B., Schneeberger, K., & Laubinger, S. (2018). The U1 snRNP Subunit LUC7 Modulates Plant Development and Stress Responses via Regulation of Alternative Splicing. Plant Cell, 30, 2838-2854. doi:10.1105/tpc.18.00244. open access

Atanasov, K. E., Liu, C., Erban, A., Kopka, J., Parker, J. E., Alcázar, R. 2018. NLR mutations suppressing immune hybrid incompatibility and their effects on disease resistance. Plant Physiology 177:1152-1169, doi: 10.1104/pp.18.00462. open access

Bhosale, R., Boudolf, V., Cuevas, F., Lu, R., Eekhout, T., Hu, Z., Van Isterdael, G., Lambert, G. M., Xu, F., Nowack, M., Smith, R. S., Vercauteren, I., De Rycke, R., Storme, V., Beeckman, T., Larkin, J. C., Kremer, A., Hofte, H., Galbraith, D., Kumpf, R. P., Maere, S., & De Veylder, L. (2018). A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation. Plant Cell 30, 2330-2351. doi:10.1105/tpc.17.00983. open access

Birkenbihl, R.P., Kracher, B., Ross, A., Kramer, K., Finkemeier, I., and Somssich I. E. (2018). Principles and characteristics of the Arabidopsis WRKY regulatory network during early MAMP-triggered immunity. Plant Journal 96, 487-502. open access

Blum, C. F., Heramvand, N., Khonsari, A. S., & Kollmann, M. (2018). Experimental noise cutoff boosts inferability of transcriptional networks in large-scale gene-deletion studies. Nature Communications 9: 133. doi:10.1038/s41467-017-02489-x. open access

Castro, PH., Bachmair, A., Bejarano, ER., Coupland, G., Lois, LM. ,  Sadanandom, A., van den Burg, HA., Vierstra, RD., Azevedo, H. (2018) , Revised nomenclature and functional overview of the ULP gene family of plant deSUMOylating proteases. Journal of Experimental Botany, Vol. 69, No. 19 pp. 4505–4509, doi:10.1093/jxb/ery301. open access

Cui, H., Qiu, J., Zhou, Y., Bhandari, D. D., Zhao, C., Bautor, J., Parker, J. E. 2018. Antagonism of transcription factor MYC2 by EDS1/PAD4 complexes bolsters salicylic acid defense in Arabidopsis effector-triggered immunity. Molecular Plant 11, 1053-1066, doi: 10.1016/j.molp.2018.05.007. open access

Das Gupta, M., & Tsiantis, M. (2018). Gene networks and the evolution of plant morphology. Current Opinion in Plant Biology 45, 82-87. doi:10.1016/j.pbi.2018.05.011.

Davis, A. M., Ronald, J., Ma, Z., Wilkinson, A. J., Philippou, K., Shindo, T., Queitsch, C., & Davis, S. J. (2018). HSP90 Contributes to Entrainment of the Arabidopsis Circadian Clock via the Morning Loop. Genetics 210, 1383-1390. doi:10.1534/genetics.118.301586.

Deveau, A., Bonito, G., Uehling, J., Paoletti, M., Becker, M., Bindschedler, S., Hacquard, S., Herve, V., Labbe, J., Lastovetsky, O. A., Mieszkin, S., Millet, L. J., Vajna, B., Junier, P., Bonfante, P., Krom, B. P., Olsson, S., van Elsas, J. D., & Wick, L. Y. (2018). Bacterial-fungal interactions: ecology, mechanisms and challenges. FEMS Microbiology Reviews, 42: fuy008, pp. 335-352. doi:10.1093/femsre/fuy008.

Di Ruocco, G., Bertolotti, G., Pacifici, E., Polverari, L., Tsiantis, M., Sabatini, S., Costantino, P., & Dello Ioio, R. (2018). Differential spatial distribution of miR165/6 determines variability in plant root anatomy. Development 145: UNSP dev153858. doi:10.1242/dev.153858.

Diaz, M., & Pecinka, A. (2018). Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex. Genes 9: 36. doi:10.3390/genes9010036. open access

Dijkhuizen, L. W., Brouwer, P., Bolhuis, H., Reichart, G.-J., Koppers, N., Huettel, B., Bolger, A., Li, F.-W., Cheng, S., Liu, X., Wong, G.-K.-S., Pryer, K., Weber, A., Braeutigam, A., & Schluepmann, H. (2018). Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N-2 but may denitrify. New Phytogogist 217, 453-466. doi:10.1111/nph.14843.

Durán, P., Thiergart, T., Garrido-Oter, R., Agler, M., Kemen, E., Schulze-Lefert, P.*, Hacquard, S.* (2018) Microbial interkingdom interactions in roots promote Arabidopsis survival. Cell 175, 973-983, doi: 10.1016/j.cell.2018.10.020 . *co-corresponding authors open access

Failmezger H*, Lempe J*, Khadem N, Cartolano M, Tsiantis M, Tresch A. (2018) MowJoe: a method for automated-high throughput dissected leaf phenotyping. Plant Methods 14:27, doi: 10.1186/s13007-018-0290. open access *contributed equally

Fichman Y, Koncz Z, Reznik N, Miller G, Szabados L, Kramer K, Nakagami H, Fromm H, Koncz C, Zilberstein A. (2018) SELENOPROTEIN O is a chloroplast protein involved in ROS scavenging and its absence increases dehydration tolerance in Arabidopsis thaliana. Plant Science 270:278-291. doi: 10.1016/j.plantsci.2018.02.023.

Flood, P. J., Theeuwen, T. P. J. M., Schneeberger, K., Keizer, P., Kruijer, W., Severing, E., Kouklas, E., Hageman, J. A., Becker, F. F. M., Schnabel, S. K., Willems, L., Ligterink, W., van Arkel, J., Mumm, R., Gualberto, J. M., Savage, L., Kramer, D. M., Kreurentjes, J. J. B., van Eeuwijk, F., Koornneef, M., Harbinson, J., Aarts, M. G. M., & Wijnker, E. (2018). Reciprocal cybrids reveal how organellar genomes affect plant phenotypes. bioRxiv. doi:10.1101/477687. open access

Frantzeskakis, L.§; Kracher, B.§; Kusch, S.; Yoshikawa-Maekawa, M.; Bauer, S.; Pedersen, C.; Spanu, P.; Maekawa, T.*; Schulze-Lefert, P.*; Panstruga, R.* (2018) Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen. BMC Genomics 19, 381 (2018), doi: . §joint first authors; *co-corresponding authors. open access

Fulgione, A., Hancock, A. M. (2018). Archaic lineages broaden our view on the history of Arabidopsis thaliana. New Phytologist 219, 1194-1198. doi:10.1111/nph.15244.

Fulgione, A., Koornneef, M., Roux, F., Hermisson, J., Hancock, A. M. (2018) Madeiran Arabidopsis thaliana Reveals Ancient Long-Range Colonization and Clarifies Demography in Eurasia, Molecular Biology and Evolution 35, 564–574, doi: 10.1093/molbev/msx300. open access

Galstyan, A., Hay, A. (2018). Snap, crack and pop of explosive fruit. Current Opinion in Genetics & Development 51, 31-36. doi:10.1016/j.gde.2018.04.007. open access

Garrido-Oter, R.*, Nakano, R. T.*, Dombrowski, N.*, Ma, K.-W., The AgBiome Team, McHardy, A. C. and P. Schulze-Lefert: Modular traits of the Rhizobiales root microbiota and their evolutionary relationship with symbiotic rhizobia. Cell Host & Microbe 24, 155–167 (2018). open access
* joint first authors

Gupta, R., Min, C. W., Kramer, K., Agrawal, G. K., Rakwal, R., Park, K.-H., Wang, Y., Finkemeier, I., & Kim, S. T. (2018). A Multi-Omics Analysis of Glycine max Leaves Reveals Alteration in Flavonoid and Isoflavonoid Metabolism Upon Ethylene and Abscisic Acid Treatment. Proteomics 18: 1700366. doi:10.1002/pmic.201700366.

Hagemann, M., Gaertner, K., Scharnagl, M., Bolay, P., Lott, S. C., Fuß, J., Huettel, B., Reinhardt, R., Klaehn, S., & Hess, W. R. (2018). Identification of the DNA methyltransferases establishing the methylome of the cyanobacterium Synechocystis sp PCC 6803. DNA RESEARCH 25: 343-352. doi:10.1093/dnares/dsy006. open access

Halder V., Kombrink E. (2018) High-Throughput Screening of Chemical Compound Libraries for Modulators of Salicylic Acid Signaling by In Situ Monitoring of Glucuronidase-Based Reporter Gene Expression. In: Fauser F., Jonikas M. (eds) Plant Chemical Genomics. Methods in Molecular Biology, vol 1795. Humana Press, New York, NY

Halder, V., Oeljeklaus, J., Heilmann, G., Krahn, J. H., Liu, Y., Xiong, Y., Schlicht, M., Schillinger, J., Kracher, B., Ehrmann, M., Kombrink, E., Kaschani, F., & Kaiser, M. (2018). Identification of the Natural Product RotihibinA as a TOR Kinase Signaling Inhibitor by Unbiased Transcriptional Profiling. Chemistry – A European Journal 24, 12500-12504. doi:10.1002/chem.201802647.

Hassani, M. A., Duran, P., & Hacquard, S. (2018). Microbial interactions within the plant holobiont. Microbiome 6: 58. doi:10.1186/s40168-018-0445-0. open access

Hayama R, Mizoguchi T, Coupland G (2018) Differential effects of light-to-dark transitions on phase setting in circadian expression among clock-controlled genes in Pharbitis nil. Plant Signal Behav. 2018;13(6):e1473686. doi: 10.1080/15592324.2018.1473686. open access

Hou, J., Shi, X., Chen, C., Islam, M. S., Johnson, A. F., Kanno, T., Huettel, B., Yen, M.-R., Hsu, F.-M., Ji, T., Chen, P.-Y., Matzke, M., Matzke, A. J. M., Cheng, J., & Birchler, J. A. (2018). Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa. PNAS 115, E11321-E11330. doi:10.1073/pnas.1807796115. open access

Hughes, P. W. (2018). Minimal-Risk Seed Heteromorphism: Proportions of Seed Morphs for Optimal Risk-Averse Heteromorphic Strategies. Frontiers in Plant Science 9: 1412. doi:10.3389/fpls.2018.01412. open access

Ibañez C, Delker C, Martinez C, Bürstenbinder K, Janitza P, Lippmann R, Ludwig W, Sun H, James GV, Klecker M, Grossjohann A, Schneeberger K, Prat S, Quint M. (2018) Brassinosteroids Dominate Hormonal Regulation of Plant Thermomorphogenesis via BZR1. Current Biology 22;28(2):303-310.e3. doi: 10.1016/j.cub.2017.11.077.

Ishimaru, Y., Hayashi, K., Suzuki, T., Fukaki, H., Prusinska, J., Meesters, C., Quareshy, M., Egoshi, S., Matsuura, H., Takahashi, K., Kato, N., Kombrink, E., Napier, R. M., Hayashi, K., & Ueda, M. (2018). Jasmonic Acid Inhibits Auxin-Induced Lateral Rooting Independently of the CORONATINE INSENSITIVE1 Receptor. Plant Physiology 177, 1704-1716. doi:10.1104/pp.18.00357. open access

Jacob, F., Kracher, B., Mine, A., Seyfferth, C., Blanvillain-Baufumé, S., Parker, J.E., Tsuda, K., Schulze-Lefert, P., Maekawa, T. (2018) A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytologist 217, 1667-1680, doi: 10.1111/nph.14943. open access

Joglekar, S., Suliman, M., Bartsch, M., Halder, V., Maintz, J., Bautor, J., Zeier, J., Parker, J. E.* and E. Kombrink* Chemical activation of EDS1/PAD4 signaling leading to pathogen resistance in Arabidopsis. Plant & Cell Physiology 59, 1592-1607. doi: 10.1093/pcp/pcy106. open access

Kirschner GK, Stahl Y, Imani J, von Korff M, Simon R (2018) Fluorescent reporter lines for auxin and cytokinin signalling in barley (Hordeum vulgare). PLoS One 13(4):e0196086. open acces

Kollmann M., Turck F. (2018) Molekulare Mechanismen der Datenintegration und Entscheidung zur Einleitung der Reproduktiven Phase in Pflanzen. In: Bossert M. (eds) Information- and Communication Theory in Molecular Biology. Lecture Notes in Bioengineering. Springer, Cham

Koskela, M.M., Brünje, A., Ivanauskaite, A., Grabsztunowicz, M., Lassowskat, I., Neumann, U., Dinh, T.V., Sindlinger, J., Schwarzer, D., Wirtz, M., Tyystjarvi, E., Finkemeier, I., and Mulo, P. (2018) Chloroplast acetyltransferase NSI is required for state transitions in Arabidopsis thaliana. The Plant Cell, doi: tpc.00155.2018. open access

Krause, K and Turck, F. (2018) Plant H3K27me3 has finally found its readers. Nature Genetics 50: 1206-1208, doi 10.1038/s41588-018-0201-1. open access

Laenen, B., Tedder, A., Nowak, MD., Toraeng, P., Wunder, J., Wötzel, S., Steige, KA., Kourmpetis, Y., Odong, T., Drouzas, AD, Bink, M. Agren, J, Coupland, G. & Slotte, T. (2018) Demography and mating system shape the genomewide impact of purifying selection in Arabis alpina. Proceedings of the National Academy of Sciences of the United States of America 115(4), 816-821, doi/10.1073/pnas.1707492115. open access

Lazaro A., Obeng-Hinneh E., Albani M. C. (2018) Extended vernalization regulates inflorescence fate in Arabis alpina by stably silencing PERPETUAL FLOWERING 1. Plant Physiology 176, 1-15. open access

Li, F.-W., Brouwer, P., Carretero-Paulet, L., Cheng, S., de Vries, J., Delaux, P.-M., Eily, A., Koppers, N., Kuo, L.-Y., Li, Z., Simenc, M., Small, I., Wafula, E., Angarita, S., Barker, M. S., Braeutigam, A., dePamphilis, C., Gould, S., Hosmani, P. S., Huang, Y.-M., Huettel, B., Kato, Y., Liu, X., Maere, S., McDowell, R., Mueller, L. A., Nierop, K. G. J., Rensing, S. A., Robison, T., Rothfels, C. J., Sigel, E. M., Song, Y., Timilsena, P. R., Van de Peer, Y., Wang, H., Wilhelmsson, P. K. I., Wolf, P. G., Xu, X., Der, J. P., Schluepmann, H., Wong, G.-K.-S., & Pryer, K. M. (2018). Fern genomes elucidate land plant evolution and cyanobacterial symbioses. Nature Plants 4, 460-472. doi:10.1038/s41477-018-0188-8. open access

Lichocka, M., Rymaszewski, W., Morgiewicz, K., Barymow-Filoniuk, I., Chlebowski, A., Sobczak, M., Samuel, M. A., Schmelzer, E., Krzymowska, M., & Hennig, J. (2018). Nucleus- and plastid-targeted annexin 5 promotes reproductive development in Arabidopsis and is essential for pollen and embryo formation. BMC Plant Biology 18: 183. doi:10.1186/s12870-018-1405-3. open access

Maekawa, T., Kracher, B., Saur, I.-M.-L., Maekawa-Yoshikawa, M., Kellner, R., Pankin, A., von Korff, M., & Schulze-Lefert, P. (2018). Subfamily-specific specialization of RGH1/MLA immune receptors in wild barley. Molecular Plant-Microbe Interactions 32, 107-119. doi:doi.org/10.1094/MPMI-07-18-0186-FI. open access

Markus, C., Pecinka, A., Karan, R., Barney, J. N., & Merotto Jr., A. (2018). Epigenetic regulation - contribution to herbicide resistance in weeds? Pest Management Science 74, 275-281. doi:10.1002/ps.4727.

Meng, Q., Gupta, R., Kwon, S. J., Wang, Y., Agrawal, G. K., Rakwal, R., Park, S.-R., & Kim, S. T. (2018). Transcriptomic Analysis of Oryza sativa Leaves Reveals Key Changes in Response to Magnaporthe oryzae MSP1. Plant Pathology Journal 34, 257-268. doi:10.5423/PPJ.OA.01.2018.0008. open access

Mine A, Seyfferth C, Kracher B, Berens ML, Becker D, Tsuda K: The Defense Phytohormone Signaling Network Enables Rapid, High-amplitude Transcriptional Reprogramming During Effector-Triggered Immunity. Plant Cell 30: 1199-1219 (2018). open access

Monniaux, M., Pieper, B., McKim, S. M., Routier-Kierzkowska, A.-L., Kierzkowski, D., Smith, R. S., & Hay, A. (2018). The role of APETALA1 in petal number robustness. eLife, 7: e39399. doi:10.7554/eLife.39399. open access

Mulki MA, Bi X, von Korff M.(2018) FLOWERING LOCUS T3 controls spikelet initiation but not floral development. Plant Physiology 178: 1170 - 1186 , doi: 10.1104/pp.18.00236. open access

Müller NA, Zhang L, Koornneef M, Jiménez-Gómez JM. (2018) Mutations in EID1 and LNK2 caused light-conditional clock deceleration during tomato domestication. Proc Natl Acad Sci 115(27):7135-7140. doi: 10.1073/pnas.1801862115.

Murchie, E. H., Kefauver, S., Luis Araus, J., Muller, O., Rascher, U., Flood, P. J., & Lawson, T. (2018). Measuring the dynamic photosynthome. Annals of Botany 122, 207-220. doi:10.1093/aob/mcy087. open access

Myouga, F., Takahashi, K., Tanaka, R., Nagata, N., Kiss, A. Z., Funk, C., Nomura, Y., Nakagami, H., Jansson, S., & Shinozaki, K. (2018). Stable Accumulation of Photosystem II Requires ONE-HELIX PROTEIN1 (OHP1) of the Light Harvesting-Like Family. Plant Physiology 176, 2277-2291. doi:10.1104/pp.17.01782. open access

Nobori T, Tsuda K: In planta Transcriptome Analysis of Pseudomonas syringae. Bio-protocol, 8: 2987 (2018)

Nobori T, Mine A, Tsuda K: Molecular networks in plant-pathogen holobiont. FEBS Letters 592: 1937-1953 (2018) open access

Nobori, T., Velásquez, A. C., Wu, J., Kvitko, B. H., Kremer, J. M., Wang, Y., He, S. Y., & Tsuda, K. (2018) Transcriptome landscape of a bacterial pathogen under plant immunity. Proceedings of the National Academy of Sciences of the United States of America 115: E3055-E3064, doi:10.1073/pnas.1800529115. 

Ó'Maoiléidigh, DS., Stewart, D., Zheng, B., Coupland, G., Wellmer, F. (2018) Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development 145, doi:10.1242/dev.157784.

Oide M, Okajima K, Nakagami H, Kato T, Sekiguchi Y, Oroguchi T, Hikima T, Yamamoto M, Nakasako M. (2018) Blue light-excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from Arabidopsis. J Biol Chem. 293: 963-972. doi: 10.1074/jbc.RA117.000324. open access

Pankin A, Altmüller J, Becker C, von Korff M (2018) Targeted resequencing reveals genomic signatures of barley domestication. New Phytologist 218: 1247 - 1259 , doi: 10.1111/nph.15077. open access

Piślewska‐Bednarek, M., Nakano, R.T., Hiruma, K., Pastorczyk, M., Sanchez‐Vallet, A., Singkaravanit‐Ogawa, S., Ciesiołka, D., Takano, Y., Molina, A., Schulze‐Lefert, P., Bednarek, P. (2018) Glutathione transferase U13 functions in pathogen‐triggered glucosinolate metabolism in Arabidopsis. Plant Physiology 176, 538–551, doi: 10.1104/pp.17.01455. open access

Rasmann S, Sánchez Vilas J, Glauser G, Cartolano M, Lempe J, Tsiantis M, Pannell JR, Heil M. (2018) Pleiotropic effect of the Flowering Locus C on plant resistance and defence against insect herbivores. Journal of Ecology 106:1244–1255, doi: 10.1111/1365-2745.12894. open access

Robbins, C., Thiergart, T., Hacquard, S., Garrido-Oter, R., Gans, W., Peiter, E., Schulze-Lefert, P.*, Spaepen, S.* (2018) Root-associated bacterial and fungal community profiles of Arabidopsis thaliana are robust across contrasting soil P levels. Phytobiomes 2, 24-34, doi: 10.1094/PBIOMES-09-17-0042-R. *co-corresponding authors open access

Robin, G. P., Kleemann, J., Neumann, U., Cabre, L., Dallery, J.-F., Lapalu, N., O’Connell, R.J. (2018) Subcellular Localization Screening of Colletotrichum higginsianum Effector Candidates Identifies Fungal Proteins Targeted to Plant Peroxisomes, Golgi Bodies, and Microtubules, Frontiers in Plant Science 9, 562. doi: 10.3389/fpls.2018.00562. open access     

Rossini L, Muehlbauer GJ, Okagaki R, Salvi S, von Korff M. (2018) Genetics of Whole Plant Morphology and Architecture. The Barley Genome pp 209-231

Sapala, A., Runions, A., Routier-Kierzkowska, A.-L., Das Gupta, M., Hong, L., Hofhuis, H., Verger, S., Mosca, G., Li, C.-B., Hay, A., Hamant, O., Roeder, A., Tsiantis, M., Prusinkiewicz, R., & Smith, R. S. (2018). Why plants make puzzle cells, and how their shape emerges. eLife, 7: e32794, doi:10.7554/eLife.32794. open access

Song, B., Mott, R., & Gan, X. (2018). Recovery of novel association loci in Arabidopsis thaliana and Drosophila melanogaster through leveraging INDELs association and integrated burden test. PLoS Genetics, 14: e1007699. doi:10.1371/journal.pgen.1007699. open access    

Sopeña-Torres, S., Jorda, L., Sanchez-Rodriguez, C., Miedes, E., Escudero, V., Swamy, S., Lopez, G., Pislewska-Bednarek, M., Lassowskat, I., Lee, J., Gu, Y., Haigis, S., Alexander, D., Pattathil, S., Muñoz-Barrios, A., Bednarek, P., Somerville, S., Schulze-Lefert, P., Hahn, M., Scheel, D., & Molina, A. (2018) YODA MAP3K kinase regulates plant immune responses conferring broad-spectrum disease resistance. New Phytologist, 218, 661-680, doi:10.1111/nph.15007.

Sun H., Ding J., Piednoël M., Schneeberger K. (2018) findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies. Bioinformatics 34(4):550-557, doi: 10.1093/bioinformatics/btx637. open access

Sun, H.-Q., Rowan, B. A., Flood, P. J., Brandt, R., Fuss, J., Hancock, A. M., Michelmore, R. W., Huettel, B., & Schneeberger, K. (2018). Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination. bioRxiv, 484022. doi:10.1101/484022. open access

Tsuda, K (2018) Division of Tasks: Defense by the Spatial Separation of Antagonistic Hormone Activities. Plant and Cell Physiology 59: 3-4. open access

Vuolo, F., Kierzkowski, D., Runions, A., Hajheidari, M., Mentink, R. A., Das Gupta, M., Zhang, Z., Vlad, D., Wang, Y., Pecinka, A., Gan, X., Hay, A., Huijser, P., & Tsiantis, M. (2018). LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes and Development 32: 1361-1366, doi:10.1101/gad.318212.118. open access 

Wang, Y., Schuck, S., Wu, J., Yang, P., Doering, A.-C., Zeier, J., Tsuda: K. (2018) A MPK3/6-WRKY33-ALD1-Pipecolic acid Regulatory Loop Contributes to Systemic Acquired Resistance. Plant Cell 30: 2480-2494, doi: 10.1105/tpc.18.00547. open access

Wenzel, A., Altmueller, J., Ekici, A. B., Popp, B., Stueber, K., Thiele, H., Pannes, A., Staubach, S., Salido, E., Nuernberg, P., Reinhardt, R., Reis, A., Rump, P., Hanisch, F.-G., Wolf, M. T. F., Wiesener, M., Huettel, B., & Beck, B. B. (2018). Single molecule real time sequencing in ADTKD-MUC1 allows complete assembly of the VNTR and exact positioning of causative mutations. Scientific Reports 8: 4170. doi:10.1038/s41598-018-22428-0. open access  

Wibowo, A., Becker, C., Durr, J., Price, J., Spaepen, S., Hilton, S., Putra, H., Papareddy, R., Saintain, Q., Harvey, S., Bending, G. D., Schulze-Lefert, P., Weigel, D., & Gutierrez-Marcos, J. (2018). Partial maintenance of organ-specific epigenetic marks during plant asexual reproduction leads to heritable phenotypic variation. Proceedings of the National Academy of Sciences of the United States of America 115, E9145-E9152. doi:10.1073/pnas.1805371115. open access  

Wozny D, Kramer K, Finkemeier I, Acosta IF, Koornneef M. (2018) Genes for seed longevity in barley identified by genomic analysis on near isogenic lines. Plant Cell Environ 41:1895-1911, doi: 10.1111/pce.13330.

Xue, L., Klinnawee, L., Zhou, Y., Saridis, G., Vijayakumar, V., Brands, M., Doermann, P., Gigolashvili, T., Turck, F., & Bucher, M. (2018). AP2 transcription factor CBX1 with a specific function in symbiotic exchange of nutrients in mycorrhizal Lotus japonicus. Proceedings of the National Academy of Sciences of the United States of America 115, E9239-E9246. doi:10.1073/pnas.1812275115. open access  

Yokoo S, Inoue S, Suzuki N, Amakawa N, Matsui H, Nakagami H, Takahashi A, Arai R, Katou S. (2018) Comparative analysis of plant isochorismate synthases reveals structural mechanisms underlying their distinct biochemical properties. Biosci Rep. 38(2). pii: BSR20171457. doi: 10.1042/BSR20171457. open access

Zhao, M., Song, J., Wu, A., Hu, T., & Li, J. (2018). Mining Beneficial Genes for Aluminum Tolerance Within a Core Collection of Rice Landraces Through Genome-Wide Association Mapping With High Density SNPs From Specific-Locus Amplified Fragment Sequencing. Frontiers in Plant Science 9: 1838. doi:10.3389/fpls.2018.01838. open access

Zhou, Y., Wang, Y., Krause, K., Yang, T., Dongus, J. A., Zhang, Y., Turck, F. (2018) Telobox motifs recruit CLF/SWN–PRC2 for H3K27me3 deposition via TRB factors in Arabidopsis. Nature Genetics 50: 638-644, doi: 10.1038/s41588-018-0109-9. open access

 
loading content
Go to Editor View