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Classes
Mesh Processes

List of Mesh processes. More...

Classes

class  mgx::process::SaveCellAxis
 
class  mgx::process::LoadCellAxis
 
class  mgx::process::ClearCellAxis
 
class  mgx::process::HideCellAxis
 Hide the cell axis on the mesh. More...
 
class  mgx::process::FixMeshCorners
 Fix labelling of cell corners. More...
 
class  mgx::process::MakeCellMesh
 Convert a segmented mesh into a 2D cellular mesh. More...
 
class  mgx::process::MarchingCubeSurface
 Find the surface of a volume defined by an iso-surface on the image intensity using a variation on the Marching Cube method. More...
 
class  mgx::process::MarchingCube3D
 
class  mgx::process::CuttingSurfMesh
 Create a surface matching the current cutting surface, whether it's a plane or a Bezier surface. More...
 
class  mgx::process::TissueCurvature
 Compute the curvature tensor for each cell of a cell mesh. More...
 
class  mgx::process::DisplayTissueCurvature
 Once the curvature tensor has been computed, this process allows to change how it is displayed. More...
 
class  mgx::process::FibrilOrientations
 Compute principle orientations of lines in the mesh signal. More...
 
class  mgx::process::DisplayFibrilOrientations
 Change the representation of the fibril orientation after it has been computed. More...
 
class  mgx::process::ComputeHeatMap
 Compute heat map on the current mesh. More...
 
class  mgx::process::DeleteHeatRangeLabels
 Delete labeling, and possibly cells, if their heat falls within a defined range. More...
 
class  mgx::process::RescaleHeatMap
 Rescale the heat map, specifying new lower and upper bound. More...
 
class  mgx::process::SaveHeatMap
 Save the current heat map in a CSV file. More...
 
class  mgx::process::LoadHeatMap
 Load the heat map from a CSV file. More...
 
class  mgx::process::SaveParents
 Store mapping from each label to a label in a different mesh (parent). More...
 
class  mgx::process::LoadParents
 Load mapping from each label to a label in a different mesh (parent). More...
 
class  mgx::process::ResetParents
 Clear label to parent mapping. More...
 
class  mgx::process::CorrectParents
 Take out non-existing labels from parent map. More...
 
class  mgx::process::HeatMapDaughterCells
 Compute the heap map that shows how many daughter cells a parent cell has. More...
 
class  mgx::process::CopyParentsToLabels
 Copy parents to labels, and clear parent table. More...
 
class  mgx::process::CorrespondanceJunctions
 
class  mgx::process::GrowthDirections
 
class  mgx::process::DisplayPDGs
 
class  mgx::process::SegmentMesh
 Segment the mesh using a seeded watershed algorithm. More...
 
class  mgx::process::SegmentClear
 Remove any segmentation from the current mesh. More...
 
class  mgx::process::MeshRelabel
 Relabel a segmented mesh. More...
 
class  mgx::process::GrabLabelsSegment
 Grab labels from other mesh (3D meshes). More...
 
class  mgx::process::LabelSelected
 Change the label of the selected vertices. More...
 
class  mgx::process::RelabelCells3D
 Relabel 3D cells. More...
 
class  mgx::process::MeshCombineRegions
 Combine over-segmented regions, based on mesh signal. More...
 
class  mgx::process::MeshAutoSegment
 Auto-Segmentation of the mesh surface based on signal. More...
 
class  mgx::process::MeshSelectAll
 Select all the vertices in the current mesh. More...
 
class  mgx::process::MeshSelectBadNormals
 Select all the vertices with invalid normals in the current mesh. More...
 
class  mgx::process::MeshUnselect
 Ensure no vertex is selected in the current mesh. More...
 
class  mgx::process::MeshInvertSelection
 Invert the selection status of all the vertices in the current mesh. More...
 
class  mgx::process::MeshSelectUnlabeled
 Select all the unlabel vertices of the current mesh. More...
 
class  mgx::process::MeshSelectLabeled
 Select all labeled vertices in the current mesh. More...
 
class  mgx::process::MeshSelectLabel
 
class  mgx::process::MeshUnselectLabel
 Unselect all the vertices having a given label. More...
 
class  mgx::process::MeshSelectClip
 Select all vertices within the clipped region. More...
 
class  mgx::process::MeshSelectWholeLabelExtend
 Extent the current selection so each label having at least one vertex selected will be fully selected. More...
 
class  mgx::process::MeshSelectDuplicateCells
 Select vertices if the region with their label is not contiguous (e.g. More...
 
class  mgx::process::ExtendByConnectivity
 Extend the current selection to all vertices that are connected to a currently selected vertex. More...
 
class  mgx::process::ViewMeshProcess
 This process is used to change how the mesh is seen. More...
 
class  mgx::process::ProjectSignal
 Project stack signal onto the current mesh. More...
 
class  mgx::process::SmoothMeshSignal
 Smooth the mesh signal using local averaging. More...
 
class  mgx::process::MeshBrightness
 
class  mgx::process::ClearMeshSignal
 Clear the mesh signal to a defined value. More...
 
class  mgx::process::ProjectCurvature
 Set the mesh signal to be the curvature of the mesh. More...
 
class  mgx::process::MeshGaussianBlur
 Smooth the mesh signal using a gaussian kernel. More...
 
class  mgx::process::MeshDiffGaussians
 Calculate a difference of Gaussians on mesh. More...
 
class  mgx::process::MeshLocalMinima
 Find the local minima in the current mesh. More...
 
class  mgx::process::MeshNormalize
 MeshNormalize MeshProcessSignal.hpp <MeshProcessSignal.hpp> More...
 
class  mgx::process::MeshDilation
 Morphological dilation on the mesh, using a spherical kernel. More...
 
class  mgx::process::MeshErosion
 Morphological erosion on the mesh, using a spherical kernel. More...
 
class  mgx::process::MeshClosing
 Morphological closing on the mesh. More...
 
class  mgx::process::MeshOpening
 Morphological opening on the mesh. More...
 
class  mgx::process::RescaleSignal
 
class  mgx::process::SetSignalProcess
 Set the signal to a given value for all currently active vertices. More...
 
class  mgx::process::TransformMesh
 Apply an affine transformation to the vertices of a mesh (all of them or just the selected ones). More...
 
class  mgx::process::ReverseMesh
 Reverse the orientation of the mesh. More...
 
class  mgx::process::SmoothMesh
 Average each vertex position based on its neighbors. More...
 
class  mgx::process::ShrinkMesh
 Displace each vertex towards the mesh center, perpendicular to the surface. More...
 
class  mgx::process::LoopSubdivisionMesh
 Subdivide the mesh uniformly using Loop subdivision. More...
 
class  mgx::process::SubdivideMesh
 Subdivide the mesh uniformely, without displacing existing vertices. More...
 
class  mgx::process::AdaptiveSubdivideBorderMesh
 Subdivide triangles around cell borders. More...
 
class  mgx::process::AdaptiveSubdivideSignalMesh
 Subdivide triangles depending on mesh signal. More...
 
class  mgx::process::SubdivideBisectMesh
 Subdivide triangles area with bisection. More...
 
class  mgx::process::ScaleMesh
 Scale the mesh. More...
 
class  mgx::process::MeshDeleteValence
 Delete vertices whose valence is wihin a given range. More...
 
class  mgx::process::MergeVertices
 Merge selected vertices into one. More...
 
class  mgx::process::DeleteEdge
 Delete the edge between 2 selected vertices. More...
 
class  mgx::process::MeshDeleteSelection
 Delete vertices selected in the current mesh, preserving cells. More...
 
class  mgx::process::MeshKeepVertices
 Mark vertices so that they can survive as lines and points. More...
 
class  BrightenMesh
 Change the brightness of the signal. More...
 
class  mgx::process::MeshLoad
 Load a MGXM mesh file. More...
 
class  mgx::process::MeshImport
 Import a mesh from a file of another format. More...
 
class  mgx::process::ResetMeshProcess
 Reset a mesh. More...
 
class  mgx::process::MeshSave
 Save a mesh into a INRIA or MGXM file. More...
 
class  mgx::process::MeshExport
 Export a mesh on various formats: PLY format, VTK format, "text" format, "cells" format, MeshEdit format, STL format or OBJ format. More...
 

Detailed Description

List of Mesh processes.