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mgx::process::Process Class Referenceabstract

This is the main process class, the one all process inherit from. More...

#include <Process.hpp>

+ Inheritance diagram for mgx::process::Process:

Classes

class  CheckState
 Class that construct a state check on the current process. More...
 

Public Types

typedef std::vector< Stack * >
::iterator 
stack_iterator
 
typedef std::vector< Stack * >
::const_iterator 
const_stack_iterator
 
typedef std::vector< Mesh * >
::iterator 
mesh_iterator
 
typedef std::vector< Mesh * >
::const_iterator 
const_mesh_iterator
 

Public Member Functions

 Process ()
 Default constructor.
 
 Process (const Process &p)
 Copy constructor. More...
 
virtual ~Process ()
 Virtual destructor.
 
void actingFile (const QString &filename, bool project_file=false)
 Method to be called anytime a file is acted on (i.e. More...
 
QString actingFile () const
 Get the file currently defining the path of the system.
 
QString pythonCall (const QStringList &parms) const
 Return the python call describing the current process.
 
int stackCount () const
 Number of stacks available to the process.
 
Stackstack (int i)
 Returns the ith stack, or 0 if there is no such stack.
 
StackcurrentStack ()
 Returns the current stack (i.e. More...
 
int currentStackId () const
 Return the id (i.e. More...
 
void setCurrentStackId (int i)
 Change which stack is current.
 
std::pair< stack_iterator,
stack_iterator > 
stacks ()
 Iterate over all the stacks.
 
std::pair
< const_stack_iterator,
const_stack_iterator > 
stacks () const
 Iterate over all the stacks.
 
StackaddStack ()
 Add a new stack to the process.
 
bool deleteStack (int i)
 Delete the stack of given id. More...
 
int meshCount () const
 Returns the number of mesh available to the process.
 
Meshmesh (int i)
 Returns the ith mesh.
 
MeshcurrentMesh ()
 Returns the current mesh (i.e. More...
 
int currentMeshId () const
 Returns the id (i.e. More...
 
void setCurrentMeshId (int i)
 Change which mesh is current.
 
std::pair< mesh_iterator,
mesh_iterator > 
meshes ()
 Iterate over all the meshs.
 
std::pair< const_mesh_iterator,
const_mesh_iterator > 
meshes () const
 Iterate over all the meshs.
 
MeshaddMesh (const Stack *stack)
 Add a mesh to the process for the given stack.
 
bool deleteMesh (int i)
 Remove a mesh from the process.
 
int selectedLabel () const
 Get the current selected label.
 
void setSelectedLabel (int label)
 Change the current selected label.
 
float globalBrightness ()
 Return the current setting for the global brightness level.
 
float globalContrast ()
 Return the current setting for the global contrast level.
 
void setGlobalBrightness (float value)
 Change the current setting for the global brightness level. More...
 
void setGlobalContrast (float value)
 Change the current setting for the global contrast level. More...
 
bool meshSelection () const
 Returns if the user has mesh selection active.
 
bool lineBorderSelection () const
 Returns is the user has line border selection active.
 
void updateState ()
 Update the state of the application from the current data. More...
 
void updateViewer ()
 Force the viewer to refresh, without pausing the process.
 
bool setErrorMessage (const QString &str)
 Set an error message that will be displayed if the process returns false.
 
QString errorMessage () const
 Get the current error message.
 
void setWarningMessage (const QString &str)
 Set a warning message that will be displayed if the process returns true.
 
QString warningMessage () const
 Get the current warning message.
 
void userCancel () const
 Throw an exception informing the system that the user canceled the current process.
 
const QStringfile () const
 Get the name of the file that was used to load the current process (i.e. More...
 
Clipclip1 ()
 Return the object defining the first clipping region.
 
Clipclip2 ()
 Return the object defining the second clipping region.
 
Clipclip3 ()
 Return the object defining the third clipping region.
 
const Clipclip1 () const
 Return the object defining the first clipping region.
 
const Clipclip2 () const
 Return the object defining the second clipping region.
 
const Clipclip3 () const
 Return the object defining the third clipping region.
 
CuttingSurfacecuttingSurface ()
 Return the cutting surface.
 
const CuttingSurfacecuttingSurface () const
 Return the cutting surface.
 
virtual QString type () const =0
 Returns a string identifying the process type.
 
QStringList booleanChoice () const
 Helper function that provides a list of choices for a boolean argument.
 
QStringList storeChoice () const
 Helper function that provides a list of choices for choosing from the main or work stack.
 
virtual uint numParms () const
 Returns the number of named string for this process.
 
ProcessmakeProcess (const QString &processType, const QString &processName)
 Creates a process object by name.
 
bool RunProcess (Process &proc, const QStringList &parms) throw ()
 Launch a process with generic arguments. More...
 
bool RunProcess (const QString &processType, const QString &processName, const QStringList &parms) throw ()
 Launch a process by name. More...
 
virtual bool operator() (const QStringList &parms)=0
 Implementation of the process with generic arguments. More...
 
virtual QString name () const =0
 Returns the name of the process. More...
 
virtual QString description () const =0
 Returns a description of the process for the GUI.
 
virtual QString folder () const
 Folder in which to place the process. More...
 
virtual QStringList parmNames () const =0
 List of named parameters. More...
 
virtual QStringList parmDescs () const
 List of parameters descriptions. More...
 
virtual QStringList parmDefaults () const
 List of default parms.
 
virtual ParmChoiceMap parmChoice () const
 Purely for GUI purposes, provides for some of the parms parameter a choice. More...
 
virtual QIcon icon () const
 Icon to use to represent the process in the GUI. More...
 
virtual bool initialize (QStringList &, QWidget *)
 This is an optional method that is called only when a process is launched from the GUI. More...
 

Public Attributes

PrivateProcess * p
 

Static Public Attributes

static unsigned int processVersion
 

Protected Member Functions

Internal methods
bool systemCommand (SystemCommand cmd, const QStringList &parms)
 Method that can be used to launch a system command. More...
 
bool stackCheck (int checks, int which)
 Check stack properties.
 
bool storeCheck (int checks, int which)
 Check store properties.
 
bool meshCheck (int checks, int which)
 Check mesh properties.
 
QString stackError (int checks, int which)
 Generate a standardised string describing how the stack should be to not generate an error.
 
QString storeError (int checks, int which)
 Generate a standardised string describing how the store should be to not generate an error.
 
QString meshError (int checks, int which)
 Generate a standardised string describing how the mesh should be to not generate an error.
 
enum  StackCheckType {
  STACK_ANY, STACK_NON_EMPTY, STACK_VISIBLE, STACK_EMPTY,
  STACK_SCALED, STACK_TRANSFORMED, STACK_NON_SCALED, STACK_NON_TRANSFORMED
}
 Enumeration for the bitfield that identifies stack properties. More...
 
enum  StoreCheckType {
  STORE_ANY, STORE_NON_EMPTY, STORE_VISIBLE, STORE_EMPTY,
  STORE_LABEL, STORE_NON_LABEL, STORE_SCALED, STORE_TRANSFORMED,
  STORE_NON_SCALED, STORE_NON_TRANSFORMED, STORE_WORK, STORE_MAIN
}
 Enumeration for the bitfield that identifies store properties. More...
 
enum  MeshCheckType {
  MESH_ANY, MESH_NON_EMPTY, MESH_VISIBLE, MESH_HEAT,
  MESH_LABEL, MESH_NORMAL, MESH_SIGNAL, MESH_TEXTURE,
  MESH_IMAGE, MESH_SHOW_MESH, MESH_SHOW_SURF, MESH_ALL,
  MESH_BORDER, MESH_CELLMAP, MESH_CELLS, MESH_IMG_TEX,
  MESH_SCALED, MESH_TRANSFORMED, MESH_EMPTY, MESH_NON_CELLS,
  MESH_NON_IMG_TEX, MESH_NON_SCALED, MESH_NON_TRANSFORMED, MESH_PARENT,
  MESH_LABEL_PARENT
}
 Enumeration for the bitfield that identifies mesh properties. More...
 
enum  CheckType { CHECK_STACK, CHECK_STORE, CHECK_MESH }
 Enumeration of the type of checks that can be performed. More...
 
enum  CheckWhich { CHECK_CURRENT }
 
class Process::CheckState
 
CheckState checkState ()
 Call this function and convert the result to a boolean. More...
 

Detailed Description

This is the main process class, the one all process inherit from.

Note that you should never inherit this class directly, as it won't allow anything to be done. Instead, you should inherit one of the daughter class: StackProcess, MeshProcess or GlobalProcess.

Member Enumeration Documentation

Enumeration of the type of checks that can be performed.

Enumerator
CHECK_STACK 

Check stack properties.

CHECK_STORE 

Check store properties.

CHECK_MESH 

Check mesh properties.

Enumerator
CHECK_CURRENT 

Constant marking the element to check is the current one.

Enumeration for the bitfield that identifies mesh properties.

Enumerator
MESH_ANY 

Any mesh.

MESH_NON_EMPTY 

Non-empty mesh.

MESH_VISIBLE 

Either mesh or surface are visible.

MESH_HEAT 

Show the heat map.

MESH_LABEL 

Show the label.

MESH_NORMAL 

Show the normal.

MESH_SIGNAL 

Show the signal.

MESH_TEXTURE 

Show the texture.

MESH_IMAGE 

Show the image.

MESH_SHOW_MESH 

Show the mesh.

MESH_SHOW_SURF 

Show the surface.

MESH_ALL 

Show the all mesh.

MESH_BORDER 

Show border only.

MESH_CELLMAP 

Show the cell map.

MESH_CELLS 

This mesh is a cell mesh.

MESH_IMG_TEX 

This mesh has a texture.

MESH_SCALED 

This mesh is scaled.

MESH_TRANSFORMED 

This mesh is transformed.

MESH_EMPTY 

Empty mesh.

MESH_NON_CELLS 

This mesh is not a cell mesh.

MESH_NON_IMG_TEX 

This mesh doesn't have an image texture.

MESH_NON_SCALED 

This mesh is non-scaled.

MESH_NON_TRANSFORMED 

This mesh is non-transformed.

MESH_PARENT 

Show the parent label.

MESH_LABEL_PARENT 

Show the parent or label.

Enumeration for the bitfield that identifies stack properties.

Enumerator
STACK_ANY 

Any stack.

STACK_NON_EMPTY 

Non-empty stack.

STACK_VISIBLE 

Visible stack.

STACK_EMPTY 

Empty stack.

STACK_SCALED 

Scaled stack.

STACK_TRANSFORMED 

Transformed stack.

STACK_NON_SCALED 

Non-Scaled stack.

STACK_NON_TRANSFORMED 

Non-Transformed stack.

Enumeration for the bitfield that identifies store properties.

Enumerator
STORE_ANY 

Any store.

STORE_NON_EMPTY 

Non-Empty store.

STORE_VISIBLE 

Visible store.

STORE_EMPTY 

Empty store.

STORE_LABEL 

Label store.

STORE_NON_LABEL 

Non-Label store.

STORE_SCALED 

Scaled store.

STORE_TRANSFORMED 

Transformed store.

STORE_NON_SCALED 

Non-Scaled store.

STORE_NON_TRANSFORMED 

Non-Transformed store.

STORE_WORK 

Work store.

STORE_MAIN 

Main store.

Constructor & Destructor Documentation

mgx::process::Process::Process ( const Process p)

Copy constructor.

Note that you will always need to call this constructor explicitly from your process, as Process is inherited virtually. So all leaf class need to initialize it.

Member Function Documentation

void mgx::process::Process::actingFile ( const QString filename,
bool  project_file = false 
)

Method to be called anytime a file is acted on (i.e.

saved/loaded).

If needed, it will set the current folder to the one containing the file and start a session

If it is a project file (i.e. ending in mgxv), then project_file should be set to true to force the change in folder.

CheckState mgx::process::Process::checkState ( )

Call this function and convert the result to a boolean.

If the checks hold, it will return true. If not, it will return false and set the error message to a standard, fully descriptive description of what conditions should be met to use this process.

Syntax:

checkState().TYPE(CONSTRAINTS).TYPE(CONSTRAINTS)...;

Example:

if(!checkState().store(STORE_MAIN | STORE_NON_EMPTY) .store(STORE_WORK | STORE_LABEL)) return false;

Mesh* mgx::process::Process::currentMesh ( )

Returns the current mesh (i.e.

the mesh currently selected by the user)

int mgx::process::Process::currentMeshId ( ) const

Returns the id (i.e.

number) of the current mesh

Stack* mgx::process::Process::currentStack ( )

Returns the current stack (i.e.

the stack currently selected by the user).

int mgx::process::Process::currentStackId ( ) const

Return the id (i.e.

number) of the current stack.

bool mgx::process::Process::deleteStack ( int  i)

Delete the stack of given id.

Note
The current implementation assumes there are at least two stacks always available
const QString& mgx::process::Process::file ( ) const

Get the name of the file that was used to load the current process (i.e.

the mgxv file), if any.

virtual QString mgx::process::Process::folder ( ) const
inlinevirtual

Folder in which to place the process.

Subfolders can be specified by placing '/' in the path

Note
This is a purely presentation parameter. It doesn't allow two processes to have the same name if they are in different folders.

Reimplemented in mgx::process::LoadTransform, mgx::process::SaveTransform, mgx::process::StackRelabelFromMesh, mgx::process::StackRelabel, mgx::process::ShiftStack, mgx::process::ScaleStack, mgx::process::ResizeCanvas, mgx::process::ChangeVoxelSize, mgx::process::ReverseStack, mgx::process::SwapStacks, mgx::process::MeshKeepVertices, mgx::process::FillStack3D, mgx::process::MeshDeleteSelection, mgx::process::TrimStackProcess, mgx::process::CImgLaplaceStack, mgx::process::ApplyMaskLabels, mgx::process::DeleteEdge, mgx::process::FillStackToMesh, mgx::process::CImgGaussianBlurStack, mgx::process::MergeVertices, mgx::process::ApplyMaskToStack, mgx::process::SetSignalProcess, mgx::process::MeshDeleteValence, mgx::process::CopySwapStacks, mgx::process::TakeSnapshot, mgx::process::NormalizeStack, mgx::process::ExtendByConnectivity, mgx::process::CloseStackLabel, mgx::process::RescaleSignal, mgx::process::ResetParents, mgx::process::ScaleMesh, mgx::process::CopyWorkToMain, mgx::process::SaveViewFile, mgx::process::MeshOpening, mgx::process::MeshSelectDuplicateCells, mgx::process::ApplyKernelStack, mgx::process::LoadParents, mgx::process::MeshClosing, mgx::process::SubdivideBisectMesh, mgx::process::OpenStackLabel, mgx::process::CopyMainToWork, mgx::process::MeshSelectWholeLabelExtend, mgx::process::SaveParents, mgx::process::MeshExport, mgx::process::MeshErosion, mgx::process::ResetMeshProcess, mgx::process::ClipStack, mgx::process::MeshDilation, mgx::process::AdaptiveSubdivideSignalMesh, mgx::process::MeshSelectClip, mgx::process::SharpenStack, mgx::process::ResetParents, mgx::process::MeshAutoSegment, mgx::process::LoadViewFile, mgx::process::FillHolesProcess, mgx::process::EraseAtBorderStack, mgx::process::MeshNormalize, mgx::process::LoadParents, mgx::process::LoadAllData, mgx::process::MeshUnselectLabel, mgx::process::ClearMainStack, mgx::process::AdaptiveSubdivideBorderMesh, mgx::process::MeshLocalMinima, mgx::process::SaveParents, mgx::process::MeshCombineRegions, mgx::process::GaussianBlurStack, mgx::process::OpeningStack, mgx::process::FillLabelStack, mgx::process::MeshDiffGaussians, mgx::process::SubdivideMesh, mgx::process::ClearWorkStack, mgx::process::MeshSelectLabel, mgx::process::MeshImport, mgx::process::LoadHeatMap, mgx::process::MeshGaussianBlur, mgx::process::RelabelCells3D, mgx::process::FilterStack, mgx::process::LoopSubdivisionMesh, mgx::process::ClosingStack, mgx::process::SaveHeatMap, mgx::process::LocalMaximaStack, mgx::process::MeshSelectLabeled, mgx::process::BlobDetect, mgx::process::MeshSave, mgx::process::LabelSelected, mgx::process::ProjectCurvature, mgx::process::MeshLoad, mgx::process::RescaleHeatMap, mgx::process::InvertStack, mgx::process::ShrinkMesh, mgx::process::MeshSelectUnlabeled, mgx::process::GrabLabelsSegment, mgx::process::ClearMeshSignal, mgx::process::ApplyTransferFunction, mgx::process::ThresholdLabelDelete, mgx::process::ErodeStack, mgx::process::StackOpen, mgx::process::CuttingSurfMesh, mgx::process::HideCellAxis, mgx::process::SmoothMesh, mgx::process::MergeStacks, mgx::process::ColorGradient, mgx::process::DeleteHeatRangeLabels, mgx::process::JoinRegionsSegment, mgx::process::MeshBrightness, mgx::process::DisplayPDGs, mgx::process::MeshInvertSelection, mgx::process::SmoothMeshSignal, mgx::process::ClearCellAxis, mgx::process::ConsolidateRegionsNormalized, mgx::process::StackExport, mgx::process::AutoScaleStack, mgx::process::ReverseMesh, mgx::process::MeshRelabel, mgx::process::StackImport, mgx::process::BinarizeStack, mgx::process::MeshUnselect, mgx::process::PCAnalysis, mgx::process::MarchingCube3D, mgx::process::DisplayTissueCurvature, mgx::process::DilateStack, mgx::process::GrowthDirections, mgx::process::CombineStacks, mgx::process::CopyParentsToLabels, mgx::process::MakeCellMesh, mgx::process::SaveGlobalTransform, mgx::process::ProjectSignal, mgx::process::DisplayFibrilOrientations, mgx::process::StackSave, mgx::process::SegmentClear, mgx::process::ConsolidateRegions, mgx::process::LoadCellAxis, mgx::process::TransformMesh, mgx::process::BrightenStack, mgx::process::ComputeHeatMap, mgx::process::MeshSelectBadNormals, mgx::process::HeatMapDaughterCells, mgx::process::StackSwapBytes, mgx::process::PythonProcess, mgx::process::Annihilate, mgx::process::AlignCanvas, mgx::process::MarchingCubeSurface, mgx::process::ComputeVolume, mgx::process::FixMeshCorners, mgx::process::CorrespondanceJunctions, mgx::process::AverageStack, mgx::process::EdgeDetectProcess, mgx::process::TissueCurvature, mgx::process::CorrectParents, mgx::process::SetCurrentStack, mgx::process::SegmentMesh, mgx::process::WatershedStack, mgx::process::FibrilOrientations, mgx::process::AutoTrim, mgx::process::SaveCellAxis, mgx::process::MeshSelectAll, and mgx::process::ViewMeshProcess.

virtual QIcon mgx::process::Process::icon ( ) const
inlinevirtual

Icon to use to represent the process in the GUI.

Note that to use an icon present in the resources, you must precede the path with a colon (i.e. ":/images/myicon.png".

Reimplemented in mgx::process::LoadTransform, mgx::process::SaveTransform, mgx::process::StackRelabelFromMesh, mgx::process::StackRelabel, mgx::process::ShiftStack, mgx::process::ScaleStack, mgx::process::ResizeCanvas, mgx::process::ChangeVoxelSize, mgx::process::ReverseStack, mgx::process::SwapStacks, mgx::process::MeshKeepVertices, mgx::process::FillStack3D, mgx::process::MeshDeleteSelection, mgx::process::TrimStackProcess, mgx::process::ApplyMaskLabels, mgx::process::CImgLaplaceStack, mgx::process::DeleteEdge, mgx::process::FillStackToMesh, mgx::process::CImgGaussianBlurStack, mgx::process::MergeVertices, mgx::process::ApplyMaskToStack, mgx::process::SetSignalProcess, mgx::process::NormalizeStack, mgx::process::MeshDeleteValence, mgx::process::CopySwapStacks, mgx::process::TakeSnapshot, mgx::process::CloseStackLabel, mgx::process::RescaleSignal, mgx::process::ExtendByConnectivity, mgx::process::ScaleMesh, mgx::process::CopyWorkToMain, mgx::process::ResetParents, mgx::process::ApplyKernelStack, mgx::process::SaveViewFile, mgx::process::MeshSelectDuplicateCells, mgx::process::MeshOpening, mgx::process::LoadParents, mgx::process::OpenStackLabel, mgx::process::SubdivideBisectMesh, mgx::process::CopyMainToWork, mgx::process::MeshClosing, mgx::process::MeshSelectWholeLabelExtend, mgx::process::SaveParents, mgx::process::MeshAutoSegment, mgx::process::MeshExport, mgx::process::MeshErosion, mgx::process::AdaptiveSubdivideSignalMesh, mgx::process::SharpenStack, mgx::process::ClipStack, mgx::process::FillHolesProcess, mgx::process::ResetMeshProcess, mgx::process::MeshSelectClip, mgx::process::MeshDilation, mgx::process::ResetParents, mgx::process::EraseAtBorderStack, mgx::process::LoadViewFile, mgx::process::MeshNormalize, mgx::process::LoadParents, mgx::process::AdaptiveSubdivideBorderMesh, mgx::process::MeshUnselectLabel, mgx::process::ClearMainStack, mgx::process::LoadAllData, mgx::process::MeshCombineRegions, mgx::process::GaussianBlurStack, mgx::process::OpeningStack, mgx::process::MeshLocalMinima, mgx::process::SaveParents, mgx::process::FillLabelStack, mgx::process::MeshSelectLabel, mgx::process::ClearWorkStack, mgx::process::MeshDiffGaussians, mgx::process::SubdivideMesh, mgx::process::MeshImport, mgx::process::RelabelCells3D, mgx::process::LoadHeatMap, mgx::process::FilterStack, mgx::process::MeshGaussianBlur, mgx::process::ClosingStack, mgx::process::LocalMaximaStack, mgx::process::LoopSubdivisionMesh, mgx::process::BlobDetect, mgx::process::MeshSelectLabeled, mgx::process::ProjectCurvature, mgx::process::SaveHeatMap, mgx::process::LabelSelected, mgx::process::MeshLoad, mgx::process::MeshSave, mgx::process::ShrinkMesh, mgx::process::InvertStack, mgx::process::RescaleHeatMap, mgx::process::ErodeStack, mgx::process::MeshSelectUnlabeled, mgx::process::DisplayPDGs, mgx::process::ApplyTransferFunction, mgx::process::ThresholdLabelDelete, mgx::process::GrabLabelsSegment, mgx::process::MergeStacks, mgx::process::StackOpen, mgx::process::ClearMeshSignal, mgx::process::SmoothMesh, mgx::process::CuttingSurfMesh, mgx::process::HideCellAxis, mgx::process::DeleteHeatRangeLabels, mgx::process::ColorGradient, mgx::process::DisplayTissueCurvature, mgx::process::JoinRegionsSegment, mgx::process::MeshBrightness, mgx::process::MeshInvertSelection, mgx::process::PCAnalysis, mgx::process::MeshRelabel, mgx::process::ConsolidateRegionsNormalized, mgx::process::StackExport, mgx::process::ClearCellAxis, mgx::process::ReverseMesh, mgx::process::DilateStack, mgx::process::SmoothMeshSignal, mgx::process::MarchingCube3D, mgx::process::AutoScaleStack, mgx::process::BinarizeStack, mgx::process::DisplayFibrilOrientations, mgx::process::StackImport, mgx::process::CombineStacks, mgx::process::MakeCellMesh, mgx::process::GrowthDirections, mgx::process::MeshUnselect, mgx::process::SaveGlobalTransform, mgx::process::ProjectSignal, mgx::process::ComputeHeatMap, mgx::process::CopyParentsToLabels, mgx::process::LoadCellAxis, mgx::process::TransformMesh, mgx::process::ConsolidateRegions, mgx::process::StackSave, mgx::process::SegmentClear, mgx::process::Annihilate, mgx::process::MeshSelectBadNormals, mgx::process::BrightenStack, mgx::process::HeatMapDaughterCells, mgx::process::FixMeshCorners, mgx::process::ViewMeshProcess, mgx::process::AlignCanvas, mgx::process::CorrespondanceJunctions, mgx::process::StackSwapBytes, mgx::process::EdgeDetectProcess, mgx::process::MarchingCubeSurface, mgx::process::PythonProcess, mgx::process::TissueCurvature, mgx::process::SetCurrentStack, mgx::process::FibrilOrientations, mgx::process::SegmentMesh, mgx::process::ComputeVolume, mgx::process::AutoTrim, mgx::process::SaveCellAxis, mgx::process::WatershedStack, mgx::process::MeshSelectAll, mgx::process::AverageStack, and mgx::process::CorrectParents.

virtual bool mgx::process::Process::initialize ( QStringList ,
QWidget  
)
inlinevirtual

This is an optional method that is called only when a process is launched from the GUI.

If reimplemented, it receives a potential argument list, and should provide a GUI for editing it. Once the user finishing the edition, this method should modify the provided arguments and return true. If the user aborts, the method should return false. Note that returning false does not produce an error.

Parameters
parmsList of arguments
parentPointer to the parent widget. If the configure method creates a GUI, it should be a child of this widget.

Reimplemented in mgx::process::LoadTransform, mgx::process::SaveTransform, mgx::process::SaveViewFile, mgx::process::LoadParents, mgx::process::MeshExport, mgx::process::SaveParents, mgx::process::LoadViewFile, mgx::process::LoadParents, mgx::process::SaveParents, mgx::process::MeshImport, mgx::process::LoadHeatMap, mgx::process::MeshSave, mgx::process::MeshLoad, mgx::process::SaveHeatMap, mgx::process::StackOpen, mgx::process::StackExport, mgx::process::SaveGlobalTransform, mgx::process::StackImport, mgx::process::StackSave, mgx::process::ComputeHeatMap, mgx::process::LoadCellAxis, mgx::process::PythonProcess, and mgx::process::SaveCellAxis.

virtual QString mgx::process::Process::name ( ) const
pure virtual

Returns the name of the process.

Note that the name must be a valid identifier in Python once the spaces are replaced by underscores. Also, all underscore in the name will be replaced by spaces for user presentation.

Implemented in mgx::process::LoadTransform, mgx::process::SaveTransform, mgx::process::StackRelabelFromMesh, mgx::process::StackRelabel, mgx::process::ShiftStack, mgx::process::ScaleStack, mgx::process::ResizeCanvas, mgx::process::ChangeVoxelSize, mgx::process::ReverseStack, mgx::process::SwapStacks, mgx::process::MeshKeepVertices, mgx::process::FillStack3D, mgx::process::MeshDeleteSelection, mgx::process::TrimStackProcess, mgx::process::CImgLaplaceStack, mgx::process::ApplyMaskLabels, mgx::process::DeleteEdge, mgx::process::FillStackToMesh, mgx::process::CImgGaussianBlurStack, mgx::process::MergeVertices, mgx::process::ApplyMaskToStack, mgx::process::SetSignalProcess, mgx::process::MeshDeleteValence, mgx::process::CopySwapStacks, mgx::process::NormalizeStack, mgx::process::TakeSnapshot, mgx::process::ExtendByConnectivity, mgx::process::CloseStackLabel, mgx::process::RescaleSignal, mgx::process::ResetParents, mgx::process::ScaleMesh, mgx::process::CopyWorkToMain, mgx::process::SaveViewFile, mgx::process::MeshOpening, mgx::process::MeshSelectDuplicateCells, mgx::process::ApplyKernelStack, mgx::process::LoadParents, mgx::process::MeshClosing, mgx::process::SubdivideBisectMesh, mgx::process::OpenStackLabel, mgx::process::CopyMainToWork, mgx::process::MeshSelectWholeLabelExtend, mgx::process::SaveParents, mgx::process::MeshExport, mgx::process::MeshErosion, mgx::process::ResetMeshProcess, mgx::process::ClipStack, mgx::process::AdaptiveSubdivideSignalMesh, mgx::process::MeshDilation, mgx::process::MeshSelectClip, mgx::process::SharpenStack, mgx::process::ResetParents, mgx::process::MeshAutoSegment, mgx::process::FillHolesProcess, mgx::process::LoadViewFile, mgx::process::EraseAtBorderStack, mgx::process::MeshNormalize, mgx::process::LoadParents, mgx::process::MeshUnselectLabel, mgx::process::LoadAllData, mgx::process::ClearMainStack, mgx::process::AdaptiveSubdivideBorderMesh, mgx::process::MeshLocalMinima, mgx::process::SaveParents, mgx::process::MeshCombineRegions, mgx::process::GaussianBlurStack, mgx::process::OpeningStack, mgx::process::FillLabelStack, mgx::process::MeshDiffGaussians, mgx::process::SubdivideMesh, mgx::process::ClearWorkStack, mgx::process::MeshSelectLabel, mgx::process::MeshImport, mgx::process::LoadHeatMap, mgx::process::RelabelCells3D, mgx::process::MeshGaussianBlur, mgx::process::FilterStack, mgx::process::LoopSubdivisionMesh, mgx::process::ClosingStack, mgx::process::SaveHeatMap, mgx::process::LocalMaximaStack, mgx::process::MeshSelectLabeled, mgx::process::BlobDetect, mgx::process::MeshSave, mgx::process::LabelSelected, mgx::process::ProjectCurvature, mgx::process::MeshLoad, mgx::process::RescaleHeatMap, mgx::process::InvertStack, mgx::process::ShrinkMesh, mgx::process::MeshSelectUnlabeled, mgx::process::ClearMeshSignal, mgx::process::ThresholdLabelDelete, mgx::process::GrabLabelsSegment, mgx::process::ErodeStack, mgx::process::StackOpen, mgx::process::ApplyTransferFunction, mgx::process::CuttingSurfMesh, mgx::process::HideCellAxis, mgx::process::SmoothMesh, mgx::process::MergeStacks, mgx::process::ColorGradient, mgx::process::DeleteHeatRangeLabels, mgx::process::MeshBrightness, mgx::process::JoinRegionsSegment, mgx::process::DisplayPDGs, mgx::process::MeshInvertSelection, mgx::process::SmoothMeshSignal, mgx::process::ClearCellAxis, mgx::process::ConsolidateRegionsNormalized, mgx::process::StackExport, mgx::process::ReverseMesh, mgx::process::MeshRelabel, mgx::process::AutoScaleStack, mgx::process::StackImport, mgx::process::BinarizeStack, mgx::process::MeshUnselect, mgx::process::PCAnalysis, mgx::process::MarchingCube3D, mgx::process::DisplayTissueCurvature, mgx::process::DilateStack, mgx::process::GrowthDirections, mgx::process::CombineStacks, mgx::process::MakeCellMesh, mgx::process::CopyParentsToLabels, mgx::process::SaveGlobalTransform, mgx::process::ProjectSignal, mgx::process::DisplayFibrilOrientations, mgx::process::StackSave, mgx::process::SegmentClear, mgx::process::ConsolidateRegions, mgx::process::LoadCellAxis, mgx::process::TransformMesh, mgx::process::BrightenStack, mgx::process::MeshSelectBadNormals, mgx::process::ComputeHeatMap, mgx::process::HeatMapDaughterCells, mgx::process::StackSwapBytes, mgx::process::PythonProcess, mgx::process::Annihilate, mgx::process::AlignCanvas, mgx::process::MarchingCubeSurface, mgx::process::FixMeshCorners, mgx::process::CorrespondanceJunctions, mgx::process::EdgeDetectProcess, mgx::process::TissueCurvature, mgx::process::CorrectParents, mgx::process::SegmentMesh, mgx::process::AverageStack, mgx::process::WatershedStack, mgx::process::FibrilOrientations, mgx::process::AutoTrim, mgx::process::SaveCellAxis, mgx::process::ComputeVolume, mgx::process::SetCurrentStack, mgx::process::MeshSelectAll, and mgx::process::ViewMeshProcess.

virtual bool mgx::process::Process::operator() ( const QStringList parms)
pure virtual

Implementation of the process with generic arguments.

The number of arguments is guaranteed to be at least as many as the ones named in the process.

Implemented in mgx::process::LoadTransform, mgx::process::SaveTransform, mgx::process::StackRelabelFromMesh, mgx::process::StackRelabel, mgx::process::ShiftStack, mgx::process::ScaleStack, mgx::process::ResizeCanvas, mgx::process::ChangeVoxelSize, mgx::process::ReverseStack, mgx::process::SwapStacks, mgx::process::MeshKeepVertices, mgx::process::FillStack3D, mgx::process::MeshDeleteSelection, mgx::process::TrimStackProcess, mgx::process::CImgLaplaceStack, mgx::process::ApplyMaskLabels, mgx::process::DeleteEdge, mgx::process::FillStackToMesh, mgx::process::CImgGaussianBlurStack, mgx::process::MergeVertices, mgx::process::ApplyMaskToStack, mgx::process::SetSignalProcess, mgx::process::MeshDeleteValence, mgx::process::CopySwapStacks, mgx::process::TakeSnapshot, mgx::process::NormalizeStack, mgx::process::ExtendByConnectivity, mgx::process::CloseStackLabel, mgx::process::RescaleSignal, mgx::process::ResetParents, mgx::process::ScaleMesh, mgx::process::SaveViewFile, mgx::process::CopyWorkToMain, mgx::process::MeshOpening, mgx::process::MeshSelectDuplicateCells, mgx::process::LoadParents, mgx::process::MeshClosing, mgx::process::SubdivideBisectMesh, mgx::process::ApplyKernelStack, mgx::process::CopyMainToWork, mgx::process::OpenStackLabel, mgx::process::MeshSelectWholeLabelExtend, mgx::process::SaveParents, mgx::process::MeshExport, mgx::process::MeshErosion, mgx::process::ResetMeshProcess, mgx::process::MeshDilation, mgx::process::AdaptiveSubdivideSignalMesh, mgx::process::MeshSelectClip, mgx::process::ClipStack, mgx::process::ResetParents, mgx::process::SharpenStack, mgx::process::MeshAutoSegment, mgx::process::LoadViewFile, mgx::process::FillHolesProcess, mgx::process::MeshNormalize, mgx::process::EraseAtBorderStack, mgx::process::LoadParents, mgx::process::LoadAllData, mgx::process::MeshUnselectLabel, mgx::process::ClearMainStack, mgx::process::AdaptiveSubdivideBorderMesh, mgx::process::MeshLocalMinima, mgx::process::SaveParents, mgx::process::MeshCombineRegions, mgx::process::GaussianBlurStack, mgx::process::OpeningStack, mgx::process::MeshDiffGaussians, mgx::process::FillLabelStack, mgx::process::SubdivideMesh, mgx::process::ClearWorkStack, mgx::process::MeshSelectLabel, mgx::process::LoadHeatMap, mgx::process::MeshImport, mgx::process::MeshGaussianBlur, mgx::process::RelabelCells3D, mgx::process::LoopSubdivisionMesh, mgx::process::FilterStack, mgx::process::SaveHeatMap, mgx::process::ClosingStack, mgx::process::MeshSelectLabeled, mgx::process::MeshSave, mgx::process::BlobDetect, mgx::process::LocalMaximaStack, mgx::process::LabelSelected, mgx::process::MeshLoad, mgx::process::ProjectCurvature, mgx::process::ShrinkMesh, mgx::process::InvertStack, mgx::process::RescaleHeatMap, mgx::process::MeshSelectUnlabeled, mgx::process::ClearMeshSignal, mgx::process::StackOpen, mgx::process::GrabLabelsSegment, mgx::process::ThresholdLabelDelete, mgx::process::ErodeStack, mgx::process::CuttingSurfMesh, mgx::process::HideCellAxis, mgx::process::SmoothMesh, mgx::process::ApplyTransferFunction, mgx::process::MeshBrightness, mgx::process::ColorGradient, mgx::process::MergeStacks, mgx::process::DeleteHeatRangeLabels, mgx::process::MeshInvertSelection, mgx::process::DisplayPDGs, mgx::process::JoinRegionsSegment, mgx::process::SmoothMeshSignal, mgx::process::ClearCellAxis, mgx::process::ReverseMesh, mgx::process::ConsolidateRegionsNormalized, mgx::process::StackExport, mgx::process::MeshRelabel, mgx::process::AutoScaleStack, mgx::process::MeshUnselect, mgx::process::BinarizeStack, mgx::process::SaveGlobalTransform, mgx::process::CombineStacks, mgx::process::MakeCellMesh, mgx::process::MarchingCube3D, mgx::process::DilateStack, mgx::process::CopyParentsToLabels, mgx::process::GrowthDirections, mgx::process::ProjectSignal, mgx::process::StackImport, mgx::process::DisplayTissueCurvature, mgx::process::DisplayFibrilOrientations, mgx::process::StackSave, mgx::process::SegmentClear, mgx::process::LoadCellAxis, mgx::process::ConsolidateRegions, mgx::process::MeshSelectBadNormals, mgx::process::BrightenStack, mgx::process::HeatMapDaughterCells, mgx::process::PythonProcess, mgx::process::TransformMesh, mgx::process::StackSwapBytes, mgx::process::PCAnalysis, mgx::process::FixMeshCorners, mgx::process::AlignCanvas, mgx::process::Annihilate, mgx::process::SegmentMesh, mgx::process::MarchingCubeSurface, mgx::process::ComputeHeatMap, mgx::process::ComputeVolume, mgx::process::TissueCurvature, mgx::process::ViewMeshProcess, mgx::process::SaveCellAxis, mgx::process::FibrilOrientations, mgx::process::AutoTrim, mgx::process::SetCurrentStack, mgx::process::CorrespondanceJunctions, mgx::process::MeshSelectAll, mgx::process::WatershedStack, mgx::process::EdgeDetectProcess, mgx::process::AverageStack, and mgx::process::CorrectParents.

virtual ParmChoiceMap mgx::process::Process::parmChoice ( ) const
inlinevirtual

Purely for GUI purposes, provides for some of the parms parameter a choice.

In this case, the user will be presented with a combo box presenting the provided list. Note that no mechanism forces the user to choose one of this choice.

Reimplemented in mgx::process::StackRelabelFromMesh, mgx::process::ShiftStack, mgx::process::ScaleStack, mgx::process::ResizeCanvas, mgx::process::ReverseStack, mgx::process::MeshKeepVertices, mgx::process::ApplyMaskLabels, mgx::process::ApplyMaskToStack, mgx::process::SetSignalProcess, mgx::process::CopySwapStacks, mgx::process::RescaleSignal, mgx::process::MeshExport, mgx::process::MeshAutoSegment, mgx::process::MeshSelectLabel, mgx::process::MeshImport, mgx::process::BlobDetect, mgx::process::MeshSelectLabeled, mgx::process::ProjectCurvature, mgx::process::MeshSave, mgx::process::MeshLoad, mgx::process::ErodeStack, mgx::process::MeshSelectUnlabeled, mgx::process::DisplayPDGs, mgx::process::MergeStacks, mgx::process::StackOpen, mgx::process::DeleteHeatRangeLabels, mgx::process::DisplayTissueCurvature, mgx::process::PCAnalysis, mgx::process::StackExport, mgx::process::DilateStack, mgx::process::StackImport, mgx::process::DisplayFibrilOrientations, mgx::process::MakeCellMesh, mgx::process::CombineStacks, mgx::process::ProjectSignal, mgx::process::LoadCellAxis, mgx::process::StackSave, mgx::process::Annihilate, mgx::process::FixMeshCorners, mgx::process::AlignCanvas, mgx::process::CorrespondanceJunctions, mgx::process::ViewMeshProcess, mgx::process::TissueCurvature, and mgx::process::SetCurrentStack.

virtual QStringList mgx::process::Process::parmDescs ( ) const
inlinevirtual

List of parameters descriptions.

There must be as many parameters than defaults.

Reimplemented in mgx::process::LoadTransform, mgx::process::SaveTransform, mgx::process::StackRelabelFromMesh, mgx::process::StackRelabel, mgx::process::ShiftStack, mgx::process::ScaleStack, mgx::process::ResizeCanvas, mgx::process::ChangeVoxelSize, mgx::process::ReverseStack, mgx::process::SwapStacks, mgx::process::MeshKeepVertices, mgx::process::FillStack3D, mgx::process::MeshDeleteSelection, mgx::process::TrimStackProcess, mgx::process::CImgLaplaceStack, mgx::process::ApplyMaskLabels, mgx::process::DeleteEdge, mgx::process::FillStackToMesh, mgx::process::CImgGaussianBlurStack, mgx::process::MergeVertices, mgx::process::ApplyMaskToStack, mgx::process::SetSignalProcess, mgx::process::MeshDeleteValence, mgx::process::CopySwapStacks, mgx::process::NormalizeStack, mgx::process::TakeSnapshot, mgx::process::ExtendByConnectivity, mgx::process::CloseStackLabel, mgx::process::RescaleSignal, mgx::process::ScaleMesh, mgx::process::CopyWorkToMain, mgx::process::ResetParents, mgx::process::SaveViewFile, mgx::process::MeshSelectDuplicateCells, mgx::process::ApplyKernelStack, mgx::process::MeshOpening, mgx::process::LoadParents, mgx::process::OpenStackLabel, mgx::process::SubdivideBisectMesh, mgx::process::CopyMainToWork, mgx::process::MeshClosing, mgx::process::MeshSelectWholeLabelExtend, mgx::process::SaveParents, mgx::process::MeshExport, mgx::process::MeshErosion, mgx::process::AdaptiveSubdivideSignalMesh, mgx::process::ClipStack, mgx::process::SharpenStack, mgx::process::ResetMeshProcess, mgx::process::MeshSelectClip, mgx::process::MeshAutoSegment, mgx::process::MeshDilation, mgx::process::FillHolesProcess, mgx::process::ResetParents, mgx::process::EraseAtBorderStack, mgx::process::LoadViewFile, mgx::process::MeshNormalize, mgx::process::LoadParents, mgx::process::MeshUnselectLabel, mgx::process::ClearMainStack, mgx::process::AdaptiveSubdivideBorderMesh, mgx::process::LoadAllData, mgx::process::MeshCombineRegions, mgx::process::GaussianBlurStack, mgx::process::MeshLocalMinima, mgx::process::SaveParents, mgx::process::OpeningStack, mgx::process::FillLabelStack, mgx::process::MeshDiffGaussians, mgx::process::SubdivideMesh, mgx::process::ClearWorkStack, mgx::process::MeshImport, mgx::process::RelabelCells3D, mgx::process::LoadHeatMap, mgx::process::MeshGaussianBlur, mgx::process::FilterStack, mgx::process::LoopSubdivisionMesh, mgx::process::ClosingStack, mgx::process::LocalMaximaStack, mgx::process::BlobDetect, mgx::process::MeshSelectLabeled, mgx::process::SaveHeatMap, mgx::process::LabelSelected, mgx::process::MeshSave, mgx::process::ProjectCurvature, mgx::process::MeshLoad, mgx::process::InvertStack, mgx::process::ShrinkMesh, mgx::process::RescaleHeatMap, mgx::process::MeshSelectUnlabeled, mgx::process::ErodeStack, mgx::process::GrabLabelsSegment, mgx::process::ThresholdLabelDelete, mgx::process::ApplyTransferFunction, mgx::process::ClearMeshSignal, mgx::process::StackOpen, mgx::process::CuttingSurfMesh, mgx::process::MergeStacks, mgx::process::HideCellAxis, mgx::process::SmoothMesh, mgx::process::ColorGradient, mgx::process::DeleteHeatRangeLabels, mgx::process::DisplayPDGs, mgx::process::JoinRegionsSegment, mgx::process::MeshBrightness, mgx::process::MeshInvertSelection, mgx::process::ClearCellAxis, mgx::process::ConsolidateRegionsNormalized, mgx::process::SmoothMeshSignal, mgx::process::MeshRelabel, mgx::process::ReverseMesh, mgx::process::StackExport, mgx::process::AutoScaleStack, mgx::process::DisplayTissueCurvature, mgx::process::PCAnalysis, mgx::process::BinarizeStack, mgx::process::MarchingCube3D, mgx::process::DilateStack, mgx::process::StackImport, mgx::process::GrowthDirections, mgx::process::MeshUnselect, mgx::process::CombineStacks, mgx::process::MakeCellMesh, mgx::process::SaveGlobalTransform, mgx::process::DisplayFibrilOrientations, mgx::process::CopyParentsToLabels, mgx::process::ProjectSignal, mgx::process::ConsolidateRegions, mgx::process::SegmentClear, mgx::process::StackSave, mgx::process::LoadCellAxis, mgx::process::MeshSelectBadNormals, mgx::process::BrightenStack, mgx::process::ComputeHeatMap, mgx::process::HeatMapDaughterCells, mgx::process::Annihilate, mgx::process::StackSwapBytes, mgx::process::PythonProcess, mgx::process::AlignCanvas, mgx::process::CorrespondanceJunctions, mgx::process::MarchingCubeSurface, mgx::process::FixMeshCorners, mgx::process::EdgeDetectProcess, mgx::process::TissueCurvature, mgx::process::FibrilOrientations, mgx::process::ComputeVolume, mgx::process::SetCurrentStack, mgx::process::SegmentMesh, mgx::process::AutoTrim, mgx::process::WatershedStack, mgx::process::SaveCellAxis, mgx::process::MeshSelectAll, mgx::process::CorrectParents, mgx::process::AverageStack, and mgx::process::ViewMeshProcess.

virtual QStringList mgx::process::Process::parmNames ( ) const
pure virtual

List of named parameters.

There must be as many parameters than defaults.

Implemented in mgx::process::LoadTransform, mgx::process::SaveTransform, mgx::process::StackRelabelFromMesh, mgx::process::StackRelabel, mgx::process::ShiftStack, mgx::process::ScaleStack, mgx::process::ResizeCanvas, mgx::process::ChangeVoxelSize, mgx::process::ReverseStack, mgx::process::SwapStacks, mgx::process::MeshKeepVertices, mgx::process::FillStack3D, mgx::process::MeshDeleteSelection, mgx::process::TrimStackProcess, mgx::process::CImgLaplaceStack, mgx::process::ApplyMaskLabels, mgx::process::DeleteEdge, mgx::process::FillStackToMesh, mgx::process::CImgGaussianBlurStack, mgx::process::MergeVertices, mgx::process::ApplyMaskToStack, mgx::process::SetSignalProcess, mgx::process::MeshDeleteValence, mgx::process::CopySwapStacks, mgx::process::NormalizeStack, mgx::process::TakeSnapshot, mgx::process::ExtendByConnectivity, mgx::process::CloseStackLabel, mgx::process::RescaleSignal, mgx::process::ScaleMesh, mgx::process::CopyWorkToMain, mgx::process::ResetParents, mgx::process::SaveViewFile, mgx::process::MeshSelectDuplicateCells, mgx::process::MeshOpening, mgx::process::ApplyKernelStack, mgx::process::LoadParents, mgx::process::SubdivideBisectMesh, mgx::process::MeshClosing, mgx::process::OpenStackLabel, mgx::process::CopyMainToWork, mgx::process::MeshSelectWholeLabelExtend, mgx::process::SaveParents, mgx::process::MeshExport, mgx::process::MeshErosion, mgx::process::AdaptiveSubdivideSignalMesh, mgx::process::ClipStack, mgx::process::ResetMeshProcess, mgx::process::MeshSelectClip, mgx::process::SharpenStack, mgx::process::MeshDilation, mgx::process::MeshAutoSegment, mgx::process::ResetParents, mgx::process::FillHolesProcess, mgx::process::EraseAtBorderStack, mgx::process::LoadViewFile, mgx::process::MeshNormalize, mgx::process::LoadParents, mgx::process::MeshUnselectLabel, mgx::process::ClearMainStack, mgx::process::LoadAllData, mgx::process::AdaptiveSubdivideBorderMesh, mgx::process::MeshCombineRegions, mgx::process::MeshLocalMinima, mgx::process::GaussianBlurStack, mgx::process::SaveParents, mgx::process::OpeningStack, mgx::process::FillLabelStack, mgx::process::MeshDiffGaussians, mgx::process::SubdivideMesh, mgx::process::ClearWorkStack, mgx::process::MeshSelectLabel, mgx::process::MeshImport, mgx::process::LoadHeatMap, mgx::process::RelabelCells3D, mgx::process::MeshGaussianBlur, mgx::process::FilterStack, mgx::process::LoopSubdivisionMesh, mgx::process::ClosingStack, mgx::process::LocalMaximaStack, mgx::process::SaveHeatMap, mgx::process::MeshSelectLabeled, mgx::process::BlobDetect, mgx::process::MeshSave, mgx::process::LabelSelected, mgx::process::ProjectCurvature, mgx::process::MeshLoad, mgx::process::InvertStack, mgx::process::ShrinkMesh, mgx::process::RescaleHeatMap, mgx::process::MeshSelectUnlabeled, mgx::process::GrabLabelsSegment, mgx::process::ThresholdLabelDelete, mgx::process::ErodeStack, mgx::process::ClearMeshSignal, mgx::process::ApplyTransferFunction, mgx::process::StackOpen, mgx::process::CuttingSurfMesh, mgx::process::MergeStacks, mgx::process::HideCellAxis, mgx::process::SmoothMesh, mgx::process::ColorGradient, mgx::process::DeleteHeatRangeLabels, mgx::process::JoinRegionsSegment, mgx::process::MeshBrightness, mgx::process::DisplayPDGs, mgx::process::MeshInvertSelection, mgx::process::ClearCellAxis, mgx::process::ConsolidateRegionsNormalized, mgx::process::SmoothMeshSignal, mgx::process::ReverseMesh, mgx::process::MeshRelabel, mgx::process::StackExport, mgx::process::AutoScaleStack, mgx::process::BinarizeStack, mgx::process::PCAnalysis, mgx::process::StackImport, mgx::process::GrowthDirections, mgx::process::MeshUnselect, mgx::process::MarchingCube3D, mgx::process::DisplayTissueCurvature, mgx::process::DilateStack, mgx::process::CombineStacks, mgx::process::MakeCellMesh, mgx::process::SaveGlobalTransform, mgx::process::CopyParentsToLabels, mgx::process::DisplayFibrilOrientations, mgx::process::ProjectSignal, mgx::process::StackSave, mgx::process::SegmentClear, mgx::process::ConsolidateRegions, mgx::process::LoadCellAxis, mgx::process::TransformMesh, mgx::process::BrightenStack, mgx::process::MeshSelectBadNormals, mgx::process::ComputeHeatMap, mgx::process::HeatMapDaughterCells, mgx::process::StackSwapBytes, mgx::process::PythonProcess, mgx::process::Annihilate, mgx::process::AlignCanvas, mgx::process::MarchingCubeSurface, mgx::process::CorrespondanceJunctions, mgx::process::FixMeshCorners, mgx::process::EdgeDetectProcess, mgx::process::TissueCurvature, mgx::process::FibrilOrientations, mgx::process::ComputeVolume, mgx::process::SegmentMesh, mgx::process::AutoTrim, mgx::process::WatershedStack, mgx::process::SetCurrentStack, mgx::process::SaveCellAxis, mgx::process::CorrectParents, mgx::process::AverageStack, mgx::process::MeshSelectAll, and mgx::process::ViewMeshProcess.

bool mgx::process::Process::RunProcess ( Process proc,
const QStringList parms 
)
throw (
)

Launch a process with generic arguments.

Note that exceptions are filtered and converted into an error message and the process returning false.

bool mgx::process::Process::RunProcess ( const QString processType,
const QString processName,
const QStringList parms 
)
throw (
)

Launch a process by name.

Note that exceptions are filtered and converted into an error message and the process returning false.

void mgx::process::Process::setGlobalBrightness ( float  value)

Change the current setting for the global brightness level.

The brightness is clamped to the range [-1;1]

void mgx::process::Process::setGlobalContrast ( float  value)

Change the current setting for the global contrast level.

The contrast is clamped to the range [0;2]

bool mgx::process::Process::systemCommand ( SystemCommand  cmd,
const QStringList parms 
)
protected

Method that can be used to launch a system command.

The process programmer should not use this directly but use one of the public convenience method instead.

void mgx::process::Process::updateState ( )

Update the state of the application from the current data.

The process is paused until it's done.


The documentation for this class was generated from the following file: